RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 A0A087X002 238 aa8.32□□□□□ -1.08
SCAF4-202ENST00000399804 FLG2Q5D862 2391 aaPredicted RBP8.31□□□□□ -1.08
SCAF4-202ENST00000399804 A8MUN3 132 aa8.3□□□□□ -1.08
SCAF4-202ENST00000399804 COA5Q86WW8 74 aa8.29□□□□□ -1.08
SCAF4-202ENST00000399804 ATP11AUNQ6ZP68 121 aa8.27□□□□□ -1.09
SCAF4-202ENST00000399804 SRRM2Q9UQ35 2752 aaKnown RBP8.26□□□□□ -1.09
SCAF4-202ENST00000399804 PMAIP1Q13794 54 aa8.23□□□□□ -1.09
SCAF4-202ENST00000399804 SPANXA2-OT1Q8N9U9 137 aa8.22□□□□□ -1.09
SCAF4-202ENST00000399804 KRTAP29-1A8MX34 341 aaPredicted RBP8.21□□□□□ -1.1
SCAF4-202ENST00000399804 J3QL48 77 aa8.2□□□□□ -1.1
SCAF4-202ENST00000399804 FBN3Q75N90 2809 aa8.2□□□□□ -1.1
SCAF4-202ENST00000399804 NOTCH2NLQ7Z3S9 236 aa8.18□□□□□ -1.1
SCAF4-202ENST00000399804 A0A1B0GU69 56 aa8.17□□□□□ -1.1
SCAF4-202ENST00000399804 Q5VSD8 79 aa8.17□□□□□ -1.1
SCAF4-202ENST00000399804 KRTAP13-2Q52LG2 175 aa8.16□□□□□ -1.1
SCAF4-202ENST00000399804 Q8N9P0 234 aaPredicted RBP8.16□□□□□ -1.1
SCAF4-202ENST00000399804 Q1T7F1 81 aa8.14□□□□□ -1.11
SCAF4-202ENST00000399804 ZCCHC13Q8WW36 166 aaKnown RBP8.14□□□□□ -1.11
SCAF4-202ENST00000399804 IGLV7-46A0A075B6I9 117 aa8.14□□□□□ -1.11
SCAF4-202ENST00000399804 Q6ZSA8 131 aa8.14□□□□□ -1.11
SCAF4-202ENST00000399804 A8MU10 97 aa8.13□□□□□ -1.11
SCAF4-202ENST00000399804 Q8N1X5 172 aa8.13□□□□□ -1.11
SCAF4-202ENST00000399804 CYP4F30PQ9H0H9 118 aa8.13□□□□□ -1.11
SCAF4-202ENST00000399804 CSMD3Q7Z407 3707 aa8.13□□□□□ -1.11
SCAF4-202ENST00000399804 HRES1P13985 223 aa8.12□□□□□ -1.11
SCAF4-202ENST00000399804 Q5W150 140 aa8.1□□□□□ -1.11
SCAF4-202ENST00000399804 COL7A1Q02388 2944 aa8.08□□□□□ -1.12
SCAF4-202ENST00000399804 K7ERS5 55 aa8.07□□□□□ -1.12
SCAF4-202ENST00000399804 MEGF8Q7Z7M0 2845 aa8.06□□□□□ -1.12
SCAF4-202ENST00000399804 ASB16-AS1Q495Z4 193 aa8.04□□□□□ -1.12
SCAF4-202ENST00000399804 Q5VV11 94 aa8.04□□□□□ -1.12
SCAF4-202ENST00000399804 HUWE1Q7Z6Z7 4374 aaKnown RBP8□□□□□ -1.13
SCAF4-202ENST00000399804 KRTAP1-4P0C5Y4 121 aa7.98□□□□□ -1.13
SCAF4-202ENST00000399804 SPINK7P58062 85 aa7.96□□□□□ -1.14
SCAF4-202ENST00000399804 RPS29P62273 56 aaKnown RBP7.91□□□□□ -1.14
SCAF4-202ENST00000399804 UQCR11O14957 56 aa7.91□□□□□ -1.14
SCAF4-202ENST00000399804 LCA10Q71F78 164 aa7.89□□□□□ -1.15
SCAF4-202ENST00000399804 RBM12B-AS1Q9P1G2 102 aa7.86□□□□□ -1.15
SCAF4-202ENST00000399804 KTN1-AS1Q86SY8 53 aa7.85□□□□□ -1.15
SCAF4-202ENST00000399804 Q75L30 129 aa7.84□□□□□ -1.15
SCAF4-202ENST00000399804 COX6B2Q6YFQ2 88 aa7.84□□□□□ -1.15
SCAF4-202ENST00000399804 DMAC1Q96GE9 116 aa7.84□□□□□ -1.16
SCAF4-202ENST00000399804 DNAH9Q9NYC9 4486 aa7.83□□□□□ -1.16
SCAF4-202ENST00000399804 MIR22HGQ0VDD5 57 aa7.83□□□□□ -1.16
SCAF4-202ENST00000399804 LINC01558Q9Y6Z2 57 aa7.82□□□□□ -1.16
SCAF4-202ENST00000399804 CDC42SE1Q9NRR8 79 aa7.81□□□□□ -1.16
SCAF4-202ENST00000399804 ANK2Q01484 3957 aa7.81□□□□□ -1.16
SCAF4-202ENST00000399804 A0A1B0GVY2 172 aa7.78□□□□□ -1.16
SCAF4-202ENST00000399804 DNAH10Q8IVF4 4471 aa7.75□□□□□ -1.17
SCAF4-202ENST00000399804 DNHD1Q96M86 4753 aa7.7□□□□□ -1.18
SCAF4-202ENST00000399804 PRAC1Q96KF2 57 aa7.7□□□□□ -1.18
SCAF4-202ENST00000399804 PLECQ15149 4684 aaKnown RBP7.68□□□□□ -1.18
SCAF4-202ENST00000399804 A0A1B0GU33 70 aa7.67□□□□□ -1.18
SCAF4-202ENST00000399804 A6NN06 94 aa7.67□□□□□ -1.18
SCAF4-202ENST00000399804 A8MUU9 505 aa7.66□□□□□ -1.18
SCAF4-202ENST00000399804 SEC61BP60468 96 aaKnown RBP7.66□□□□□ -1.18
SCAF4-202ENST00000399804 A0A0D9SG42 100 aa7.65□□□□□ -1.19
SCAF4-202ENST00000399804 C20orf166-AS1Q96NR2 134 aa7.65□□□□□ -1.19
SCAF4-202ENST00000399804 S4R3F8 94 aa7.64□□□□□ -1.19
SCAF4-202ENST00000399804 KRTAP16-1A8MUX0 517 aa7.63□□□□□ -1.19
SCAF4-202ENST00000399804 LYSTQ99698 3801 aa7.63□□□□□ -1.19
SCAF4-202ENST00000399804 CSAG1Q6PB30 78 aa7.61□□□□□ -1.19
SCAF4-202ENST00000399804 RPL37P61927 97 aaKnown RBP7.6□□□□□ -1.19
SCAF4-202ENST00000399804 LINC01554Q52M75 96 aa7.59□□□□□ -1.19
SCAF4-202ENST00000399804 ADM2Q7Z4H4 148 aa7.59□□□□□ -1.2
SCAF4-202ENST00000399804 PRKDCP78527 4128 aaKnown RBP7.54□□□□□ -1.2
SCAF4-202ENST00000399804 KRTAP10-8P60410 259 aa7.53□□□□□ -1.2
SCAF4-202ENST00000399804 SPINT4Q6UDR6 99 aa7.53□□□□□ -1.2
SCAF4-202ENST00000399804 DNAH1Q9P2D7 4330 aa7.51□□□□□ -1.21
SCAF4-202ENST00000399804 XP32Q5T750 250 aa7.51□□□□□ -1.21
SCAF4-202ENST00000399804 STARD9Q9P2P6 4700 aa7.5□□□□□ -1.21
SCAF4-202ENST00000399804 KRTAP13-3Q3SY46 172 aa7.49□□□□□ -1.21
SCAF4-202ENST00000399804 VPS13DQ5THJ4 4388 aa7.46□□□□□ -1.22
SCAF4-202ENST00000399804 DNAH11Q96DT5 4516 aa7.45□□□□□ -1.22
SCAF4-202ENST00000399804 H1FX-AS1Q4G0G2 97 aa7.45□□□□□ -1.22
SCAF4-202ENST00000399804 M0R2T5 61 aa7.41□□□□□ -1.22
SCAF4-202ENST00000399804 SPATA8Q6RVD6 105 aa7.41□□□□□ -1.22
SCAF4-202ENST00000399804 DNAH3Q8TD57 4116 aa7.39□□□□□ -1.23
SCAF4-202ENST00000399804 CMYA5Q8N3K9 4069 aa7.37□□□□□ -1.23
SCAF4-202ENST00000399804 DNAH5Q8TE73 4624 aa7.37□□□□□ -1.23
SCAF4-202ENST00000399804 R4GN34 69 aa7.37□□□□□ -1.23
SCAF4-202ENST00000399804 DNAH7Q8WXX0 4024 aa7.36□□□□□ -1.23
SCAF4-202ENST00000399804 TPRXLQ17RH7 258 aa7.35□□□□□ -1.23
SCAF4-202ENST00000399804 FRAS1Q86XX4 4008 aa7.34□□□□□ -1.23
SCAF4-202ENST00000399804 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
SCAF4-202ENST00000399804 CRIPTQ9P021 101 aa7.32□□□□□ -1.24
SCAF4-202ENST00000399804 DNAH17Q9UFH2 4485 aa7.3□□□□□ -1.24
SCAF4-202ENST00000399804 KMT2AQ03164 3969 aa7.29□□□□□ -1.24
SCAF4-202ENST00000399804 M0QZ58 72 aa7.28□□□□□ -1.24
SCAF4-202ENST00000399804 ALMS1Q8TCU4 4167 aa7.27□□□□□ -1.25
SCAF4-202ENST00000399804 CAMK2N1Q7Z7J9 78 aa7.25□□□□□ -1.25
SCAF4-202ENST00000399804 DNAH8Q96JB1 4490 aa7.24□□□□□ -1.25
SCAF4-202ENST00000399804 FAT1Q14517 4588 aa7.22□□□□□ -1.25
SCAF4-202ENST00000399804 DNAH2Q9P225 4427 aa7.21□□□□□ -1.25
SCAF4-202ENST00000399804 LRP1BQ9NZR2 4599 aa7.2□□□□□ -1.26
SCAF4-202ENST00000399804 MT1HL1P0DM35 61 aa7.19□□□□□ -1.26
SCAF4-202ENST00000399804 DYNC1H1Q14204 4646 aaKnown RBP7.19□□□□□ -1.26
SCAF4-202ENST00000399804 H3BS24 57 aa7.16□□□□□ -1.26
SCAF4-202ENST00000399804 DYNC2H1Q8NCM8 4307 aaKnown RBP7.14□□□□□ -1.27
SCAF4-202ENST00000399804 KRTAP3-1Q9BYR8 98 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms