RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.52□□□□□ -1.85
RFFL-202ENST00000394597 TENM1Q9UKZ4 2725 aa3.51□□□□□ -1.85
RFFL-202ENST00000394597 J3QL48 77 aa3.51□□□□□ -1.85
RFFL-202ENST00000394597 CUBNO60494 3623 aa3.51□□□□□ -1.85
RFFL-202ENST00000394597 A0A1B0GVX0 72 aa3.51□□□□□ -1.85
RFFL-202ENST00000394597 FAM229AH3BQW9 127 aa3.5□□□□□ -1.85
RFFL-202ENST00000394597 PLA2G1BP04054 148 aaKnown RBP3.5□□□□□ -1.85
RFFL-202ENST00000394597 IGLV7-43P04211 117 aa3.5□□□□□ -1.85
RFFL-202ENST00000394597 SPRR1AP35321 89 aa3.5□□□□□ -1.85
RFFL-202ENST00000394597 Q6ZR54 194 aa3.5□□□□□ -1.85
RFFL-202ENST00000394597 MMP24-AS1A0A0U1RRL7 71 aa3.49□□□□□ -1.85
RFFL-202ENST00000394597 PLAC8Q9NZF1 115 aa3.49□□□□□ -1.85
RFFL-202ENST00000394597 TYMSOSQ8TAI1 123 aa3.48□□□□□ -1.85
RFFL-202ENST00000394597 ASB16-AS1Q495Z4 193 aa3.48□□□□□ -1.85
RFFL-202ENST00000394597 KRTAP29-1A8MX34 341 aaPredicted RBP3.48□□□□□ -1.85
RFFL-202ENST00000394597 SMR3BP02814 79 aaPredicted RBP3.47□□□□□ -1.85
RFFL-202ENST00000394597 Q6ZRN7 208 aaPredicted RBP3.46□□□□□ -1.85
RFFL-202ENST00000394597 ANAPC11Q9NYG5 84 aa3.46□□□□□ -1.85
RFFL-202ENST00000394597 ZNF469Q96JG9 3925 aaPredicted RBP3.46□□□□□ -1.86
RFFL-202ENST00000394597 VWFP04275 2813 aa3.46□□□□□ -1.86
RFFL-202ENST00000394597 LINC00472Q9H8W2 130 aa3.46□□□□□ -1.86
RFFL-202ENST00000394597 FBN1P35555 2871 aaKnown RBP3.44□□□□□ -1.86
RFFL-202ENST00000394597 KRTAP10-2P60368 255 aa3.44□□□□□ -1.86
RFFL-202ENST00000394597 KRTAP4-16G5E9R7 235 aaPredicted RBP3.43□□□□□ -1.86
RFFL-202ENST00000394597 PANO1I0J062 215 aa3.43□□□□□ -1.86
RFFL-202ENST00000394597 SPRR1BP22528 89 aa3.43□□□□□ -1.86
RFFL-202ENST00000394597 SPATA8Q6RVD6 105 aa3.43□□□□□ -1.86
RFFL-202ENST00000394597 TENM3Q9P273 2699 aa3.42□□□□□ -1.86
RFFL-202ENST00000394597 KRTAP10-1P60331 282 aa3.42□□□□□ -1.86
RFFL-202ENST00000394597 CRIPTQ9P021 101 aa3.42□□□□□ -1.86
RFFL-202ENST00000394597 KRTAP7-1Q8IUC3 87 aa3.41□□□□□ -1.86
RFFL-202ENST00000394597 LINC00304Q8N9R0 145 aa3.4□□□□□ -1.86
RFFL-202ENST00000394597 Q96NJ1 140 aa3.39□□□□□ -1.87
RFFL-202ENST00000394597 ROMO1P60602 79 aa3.38□□□□□ -1.87
RFFL-202ENST00000394597 KRTAP11-1Q8IUC1 163 aa3.38□□□□□ -1.87
RFFL-202ENST00000394597 COX6B2Q6YFQ2 88 aa3.37□□□□□ -1.87
RFFL-202ENST00000394597 Q8N1X5 172 aa3.37□□□□□ -1.87
RFFL-202ENST00000394597 DMAC1Q96GE9 116 aa3.37□□□□□ -1.87
RFFL-202ENST00000394597 A0A1B0GU33 70 aa3.37□□□□□ -1.87
RFFL-202ENST00000394597 TRRAPQ9Y4A5 3859 aa3.37□□□□□ -1.87
RFFL-202ENST00000394597 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
RFFL-202ENST00000394597 LINC00483Q53H64 154 aa3.36□□□□□ -1.87
RFFL-202ENST00000394597 C9orf92A6NGG3 77 aa3.35□□□□□ -1.87
RFFL-202ENST00000394597 A0A087X002 238 aa3.35□□□□□ -1.87
RFFL-202ENST00000394597 Q5W150 140 aa3.35□□□□□ -1.87
RFFL-202ENST00000394597 PKD1L1Q8TDX9 2849 aa3.34□□□□□ -1.88
RFFL-202ENST00000394597 KRTAP16-1A8MUX0 517 aa3.33□□□□□ -1.88
RFFL-202ENST00000394597 KRTAP13-1Q8IUC0 172 aa3.33□□□□□ -1.88
RFFL-202ENST00000394597 A0A0D9SG42 100 aa3.32□□□□□ -1.88
RFFL-202ENST00000394597 NOTCH2NLQ7Z3S9 236 aa3.31□□□□□ -1.88
RFFL-202ENST00000394597 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
RFFL-202ENST00000394597 Q5VSD8 79 aa3.29□□□□□ -1.88
RFFL-202ENST00000394597 ANK2Q01484 3957 aa3.29□□□□□ -1.88
RFFL-202ENST00000394597 A8MUU9 505 aa3.28□□□□□ -1.88
RFFL-202ENST00000394597 Q6ZSA8 131 aa3.28□□□□□ -1.88
RFFL-202ENST00000394597 CSMD3Q7Z407 3707 aa3.28□□□□□ -1.88
RFFL-202ENST00000394597 TENM2Q9NT68 2774 aa3.27□□□□□ -1.89
RFFL-202ENST00000394597 CMYA5Q8N3K9 4069 aa3.26□□□□□ -1.89
RFFL-202ENST00000394597 SRRM2Q9UQ35 2752 aaKnown RBP3.25□□□□□ -1.89
RFFL-202ENST00000394597 LUZP6Q538Z0 58 aa3.25□□□□□ -1.89
RFFL-202ENST00000394597 H1FX-AS1Q4G0G2 97 aa3.24□□□□□ -1.89
RFFL-202ENST00000394597 KRTAP13-2Q52LG2 175 aa3.24□□□□□ -1.89
RFFL-202ENST00000394597 TGP01266 2768 aa3.24□□□□□ -1.89
RFFL-202ENST00000394597 HUWE1Q7Z6Z7 4374 aaKnown RBP3.23□□□□□ -1.89
RFFL-202ENST00000394597 RPL37P61927 97 aaKnown RBP3.23□□□□□ -1.89
RFFL-202ENST00000394597 LYSTQ99698 3801 aa3.22□□□□□ -1.89
RFFL-202ENST00000394597 C20orf166-AS1Q96NR2 134 aa3.22□□□□□ -1.89
RFFL-202ENST00000394597 M0R2T5 61 aa3.21□□□□□ -1.9
RFFL-202ENST00000394597 RPS29P62273 56 aaKnown RBP3.21□□□□□ -1.9
RFFL-202ENST00000394597 DNHD1Q96M86 4753 aa3.19□□□□□ -1.9
RFFL-202ENST00000394597 DNAH1Q9P2D7 4330 aa3.19□□□□□ -1.9
RFFL-202ENST00000394597 LCE2BO14633 110 aa3.18□□□□□ -1.9
RFFL-202ENST00000394597 KRTAP1-4P0C5Y4 121 aa3.18□□□□□ -1.9
RFFL-202ENST00000394597 A0A1B0GVY2 172 aa3.18□□□□□ -1.9
RFFL-202ENST00000394597 FBN3Q75N90 2809 aa3.17□□□□□ -1.9
RFFL-202ENST00000394597 DNAH9Q9NYC9 4486 aa3.17□□□□□ -1.9
RFFL-202ENST00000394597 SEC61BP60468 96 aaKnown RBP3.17□□□□□ -1.9
RFFL-202ENST00000394597 H0YAA0 97 aa3.16□□□□□ -1.9
RFFL-202ENST00000394597 DNAH3Q8TD57 4116 aa3.14□□□□□ -1.91
RFFL-202ENST00000394597 CAMK2N1Q7Z7J9 78 aa3.12□□□□□ -1.91
RFFL-202ENST00000394597 C10orf95Q9H7T3 257 aa3.12□□□□□ -1.91
RFFL-202ENST00000394597 MEGF8Q7Z7M0 2845 aa3.12□□□□□ -1.91
RFFL-202ENST00000394597 P0C880 135 aa3.11□□□□□ -1.91
RFFL-202ENST00000394597 KRTAP13-3Q3SY46 172 aa3.11□□□□□ -1.91
RFFL-202ENST00000394597 PLECQ15149 4684 aaKnown RBP3.07□□□□□ -1.92
RFFL-202ENST00000394597 DNAH7Q8WXX0 4024 aa3.06□□□□□ -1.92
RFFL-202ENST00000394597 KRTAP10-8P60410 259 aa3.05□□□□□ -1.92
RFFL-202ENST00000394597 S4R3F8 94 aa3.04□□□□□ -1.92
RFFL-202ENST00000394597 COL7A1Q02388 2944 aa3.04□□□□□ -1.92
RFFL-202ENST00000394597 ALMS1Q8TCU4 4167 aa3.04□□□□□ -1.92
RFFL-202ENST00000394597 R4GN34 69 aa3.04□□□□□ -1.92
RFFL-202ENST00000394597 VPS13DQ5THJ4 4388 aa3.03□□□□□ -1.92
RFFL-202ENST00000394597 TPRXLQ17RH7 258 aa3□□□□□ -1.93
RFFL-202ENST00000394597 XP32Q5T750 250 aa3□□□□□ -1.93
RFFL-202ENST00000394597 PRKDCP78527 4128 aaKnown RBP3□□□□□ -1.93
RFFL-202ENST00000394597 STARD9Q9P2P6 4700 aa2.99□□□□□ -1.93
RFFL-202ENST00000394597 PLAC4Q8WY50 150 aa2.98□□□□□ -1.93
RFFL-202ENST00000394597 DNAH10Q8IVF4 4471 aa2.97□□□□□ -1.93
RFFL-202ENST00000394597 LCE2CQ5TA81 110 aa2.97□□□□□ -1.93
RFFL-202ENST00000394597 DYNC2H1Q8NCM8 4307 aaKnown RBP2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms