RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 NISCHQ9Y2I1 1504 aa11.15□□□□□ -0.62
RFFL-202ENST00000394597 DCAF8L2P0C7V8 631 aa10.17□□□□□ -0.78
RFFL-202ENST00000394597 SHROOM4Q9ULL8 1493 aa9.74□□□□□ -0.85
RFFL-202ENST00000394597 SUPT5HO00267 1087 aaKnown RBP9.63□□□□□ -0.87
RFFL-202ENST00000394597 CCDC180Q9P1Z9 1646 aa9.45□□□□□ -0.9
RFFL-202ENST00000394597 PELP1Q8IZL8 1130 aaKnown RBP9.39□□□□□ -0.91
RFFL-202ENST00000394597 ABCC9O60706 1549 aa9.37□□□□□ -0.91
RFFL-202ENST00000394597 ZCCHC6Q5VYS8 1495 aaKnown RBP9.29□□□□□ -0.92
RFFL-202ENST00000394597 MYT1Q01538 1121 aa9.22□□□□□ -0.93
RFFL-202ENST00000394597 PABPN1Q86U42 306 aaKnown RBP eCLIP9.07□□□□□ -0.96
RFFL-202ENST00000394597 DCAF1Q9Y4B6 1507 aa9.05□□□□□ -0.96
RFFL-202ENST00000394597 SCRIBQ14160 1630 aa9.02□□□□□ -0.96
RFFL-202ENST00000394597 TRIM41Q8WV44 630 aa9.01□□□□□ -0.97
RFFL-202ENST00000394597 NACADO15069 1562 aa9.01□□□□□ -0.97
RFFL-202ENST00000394597 HRCP23327 699 aa8.99□□□□□ -0.97
RFFL-202ENST00000394597 PCGF6Q9BYE7 350 aa8.99□□□□□ -0.97
RFFL-202ENST00000394597 RB1CC1Q8TDY2 1594 aa8.99□□□□□ -0.97
RFFL-202ENST00000394597 EHMT2Q96KQ7 1210 aa8.97□□□□□ -0.97
RFFL-202ENST00000394597 FAM9AQ8IZU1 332 aaPredicted RBP8.97□□□□□ -0.97
RFFL-202ENST00000394597 CHIC1Q5VXU3 224 aa8.93□□□□□ -0.98
RFFL-202ENST00000394597 MYO15BQ96JP2 1530 aa8.88□□□□□ -0.99
RFFL-202ENST00000394597 PPARGC1BQ86YN6 1023 aaKnown RBP8.83□□□□□ -1
RFFL-202ENST00000394597 RSF1Q96T23 1441 aaPredicted RBP8.78□□□□□ -1
RFFL-202ENST00000394597 CENPBP07199 599 aaPredicted RBP8.76□□□□□ -1.01
RFFL-202ENST00000394597 UBTFP17480 764 aaKnown RBP8.75□□□□□ -1.01
RFFL-202ENST00000394597 APLP2Q06481 763 aa8.75□□□□□ -1.01
RFFL-202ENST00000394597 LOC105371045A0A1W2PR82 267 aa8.72□□□□□ -1.01
RFFL-202ENST00000394597 ZEB1P37275 1124 aaPredicted RBP8.7□□□□□ -1.02
RFFL-202ENST00000394597 CECR2Q9BXF3 1484 aa8.7□□□□□ -1.02
RFFL-202ENST00000394597 RANGAP1P46060 587 aaPredicted RBP8.69□□□□□ -1.02
RFFL-202ENST00000394597 BAZ1AQ9NRL2 1556 aaPredicted RBP8.68□□□□□ -1.02
RFFL-202ENST00000394597 MROH2BQ7Z745 1585 aa8.62□□□□□ -1.03
RFFL-202ENST00000394597 TTBK1Q5TCY1 1321 aaPredicted RBP8.61□□□□□ -1.03
RFFL-202ENST00000394597 BAZ1BQ9UIG0 1483 aaKnown RBP8.58□□□□□ -1.04
RFFL-202ENST00000394597 ATP1B4Q9UN42 357 aaPredicted RBP8.56□□□□□ -1.04
RFFL-202ENST00000394597 SCAF1Q9H7N4 1312 aaKnown RBP8.56□□□□□ -1.04
RFFL-202ENST00000394597 CSRNP3Q8WYN3 585 aa8.54□□□□□ -1.04
RFFL-202ENST00000394597 GTF3C3Q9Y5Q9 886 aa8.53□□□□□ -1.04
RFFL-202ENST00000394597 TRIM26Q12899 539 aaPredicted RBP8.52□□□□□ -1.05
RFFL-202ENST00000394597 YTHDC1Q96MU7 727 aaKnown RBP8.51□□□□□ -1.05
RFFL-202ENST00000394597 WIZO95785 1651 aa8.5□□□□□ -1.05
RFFL-202ENST00000394597 SMARCA2P51531 1590 aa8.5□□□□□ -1.05
RFFL-202ENST00000394597 SMARCA4P51532 1647 aa8.49□□□□□ -1.05
RFFL-202ENST00000394597 CCDC88BA6NC98 1476 aa8.48□□□□□ -1.05
RFFL-202ENST00000394597 TOP2AP11388 1531 aaKnown RBP8.46□□□□□ -1.05
RFFL-202ENST00000394597 ACIN1Q9UKV3 1341 aaKnown RBP8.46□□□□□ -1.05
RFFL-202ENST00000394597 ATAD2BQ9ULI0 1458 aa8.45□□□□□ -1.06
RFFL-202ENST00000394597 CCER1Q8TC90 406 aaPredicted RBP8.44□□□□□ -1.06
RFFL-202ENST00000394597 WRNQ14191 1432 aaPredicted RBP eCLIP8.44□□□□□ -1.06
RFFL-202ENST00000394597 ERICH6Q7L0X2 663 aa8.44□□□□□ -1.06
RFFL-202ENST00000394597 EEA1Q15075 1411 aa8.39□□□□□ -1.07
RFFL-202ENST00000394597 BICRAQ9NZM4 1560 aa8.36□□□□□ -1.07
RFFL-202ENST00000394597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.35□□□□□ -1.07
RFFL-202ENST00000394597 NEUROD1Q13562 356 aa8.35□□□□□ -1.07
RFFL-202ENST00000394597 HNRNPUL2Q1KMD3 747 aaKnown RBP8.35□□□□□ -1.07
RFFL-202ENST00000394597 DIEXFQ68CQ4 756 aaKnown RBP8.35□□□□□ -1.07
RFFL-202ENST00000394597 FBLN2P98095 1184 aa8.34□□□□□ -1.08
RFFL-202ENST00000394597 EIF4G1Q04637 1599 aaKnown RBP8.33□□□□□ -1.08
RFFL-202ENST00000394597 SLC24A1O60721 1099 aa8.33□□□□□ -1.08
RFFL-202ENST00000394597 NCAPD3P42695 1498 aa8.33□□□□□ -1.08
RFFL-202ENST00000394597 ABCC8Q09428 1581 aa8.32□□□□□ -1.08
RFFL-202ENST00000394597 CADPSQ9ULU8 1353 aa8.32□□□□□ -1.08
RFFL-202ENST00000394597 KIF27Q86VH2 1401 aa8.31□□□□□ -1.08
RFFL-202ENST00000394597 ITGAEP38570 1179 aa8.3□□□□□ -1.08
RFFL-202ENST00000394597 P3H3Q8IVL6 736 aa8.3□□□□□ -1.08
RFFL-202ENST00000394597 UNC13AQ9UPW8 1703 aa8.3□□□□□ -1.08
RFFL-202ENST00000394597 GOLGA3Q08378 1498 aa8.29□□□□□ -1.08
RFFL-202ENST00000394597 SOGA1O94964 1423 aa8.29□□□□□ -1.08
RFFL-202ENST00000394597 BCL11AQ9H165 835 aa8.29□□□□□ -1.08
RFFL-202ENST00000394597 TNIKQ9UKE5 1360 aa8.27□□□□□ -1.09
RFFL-202ENST00000394597 PDS5BQ9NTI5 1447 aa8.27□□□□□ -1.09
RFFL-202ENST00000394597 CEP164Q9UPV0 1460 aa8.26□□□□□ -1.09
RFFL-202ENST00000394597 CLIP1P30622 1438 aa8.25□□□□□ -1.09
RFFL-202ENST00000394597 CEP162Q5TB80 1403 aa8.24□□□□□ -1.09
RFFL-202ENST00000394597 ERCC6Q03468 1493 aa8.23□□□□□ -1.09
RFFL-202ENST00000394597 FAM50AQ14320 339 aaKnown RBP8.23□□□□□ -1.09
RFFL-202ENST00000394597 CUX2O14529 1486 aa8.22□□□□□ -1.09
RFFL-202ENST00000394597 NEFLP07196 543 aa8.22□□□□□ -1.09
RFFL-202ENST00000394597 HMGXB3Q12766 1538 aa8.22□□□□□ -1.09
RFFL-202ENST00000394597 CHMP7Q8WUX9 453 aaPredicted RBP8.21□□□□□ -1.09
RFFL-202ENST00000394597 CC2D2AQ9P2K1 1620 aa8.2□□□□□ -1.1
RFFL-202ENST00000394597 CARMIL1Q5VZK9 1371 aa8.2□□□□□ -1.1
RFFL-202ENST00000394597 FANCD2Q9BXW9 1451 aa8.19□□□□□ -1.1
RFFL-202ENST00000394597 PEG3Q9GZU2 1588 aa8.19□□□□□ -1.1
RFFL-202ENST00000394597 ANP32EQ9BTT0 268 aa8.17□□□□□ -1.1
RFFL-202ENST00000394597 CFTRP13569 1480 aa8.17□□□□□ -1.1
RFFL-202ENST00000394597 CDK11AQ9UQ88 783 aaPredicted RBP8.16□□□□□ -1.1
RFFL-202ENST00000394597 ARID3CA6NKF2 412 aa8.16□□□□□ -1.1
RFFL-202ENST00000394597 AEBP2Q6ZN18 517 aaPredicted RBP8.15□□□□□ -1.1
RFFL-202ENST00000394597 RUSC2Q8N2Y8 1516 aa8.14□□□□□ -1.11
RFFL-202ENST00000394597 TDRD9Q8NDG6 1382 aaKnown RBP8.14□□□□□ -1.11
RFFL-202ENST00000394597 MYT1LQ9UL68 1186 aa8.13□□□□□ -1.11
RFFL-202ENST00000394597 BCANQ96GW7 911 aa8.1□□□□□ -1.11
RFFL-202ENST00000394597 FGD5Q6ZNL6 1462 aa8.09□□□□□ -1.11
RFFL-202ENST00000394597 TRIM52Q96A61 297 aa8.09□□□□□ -1.11
RFFL-202ENST00000394597 RAPGEF2Q9Y4G8 1499 aa8.08□□□□□ -1.12
RFFL-202ENST00000394597 MTUS2Q5JR59 1369 aa8.08□□□□□ -1.12
RFFL-202ENST00000394597 NESP48681 1621 aa8.08□□□□□ -1.12
RFFL-202ENST00000394597 SYNJ1O43426 1573 aa8.08□□□□□ -1.12
RFFL-202ENST00000394597 ZNF316A6NFI3 1004 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms