RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 NDUFB1O75438 58 aa11.55□□□□□ -0.56
HDDC3-202ENST00000394272 A0A1B0GVX0 72 aa11.51□□□□□ -0.57
HDDC3-202ENST00000394272 HCG22E2RYF7 251 aa11.5□□□□□ -0.57
HDDC3-202ENST00000394272 CCDC179H3BU77 68 aa11.5□□□□□ -0.57
HDDC3-202ENST00000394272 MT1HL1P0DM35 61 aa11.5□□□□□ -0.57
HDDC3-202ENST00000394272 ATOX1O00244 68 aa11.48□□□□□ -0.57
HDDC3-202ENST00000394272 IGHV6-1A0A0B4J1U7 121 aa11.46□□□□□ -0.57
HDDC3-202ENST00000394272 MMP24-AS1A0A0U1RRL7 71 aa11.46□□□□□ -0.57
HDDC3-202ENST00000394272 ABCA13Q86UQ4 5058 aa11.45□□□□□ -0.58
HDDC3-202ENST00000394272 KRTAP29-1A8MX34 341 aaPredicted RBP11.44□□□□□ -0.58
HDDC3-202ENST00000394272 OXTP01178 125 aa11.44□□□□□ -0.58
HDDC3-202ENST00000394272 C8orf17Q9NRJ1 99 aa11.44□□□□□ -0.58
HDDC3-202ENST00000394272 DMBT1Q9UGM3 2413 aaPredicted RBP11.44□□□□□ -0.58
HDDC3-202ENST00000394272 WFDC13Q8IUB5 93 aa11.44□□□□□ -0.58
HDDC3-202ENST00000394272 NOTCH2NLQ7Z3S9 236 aa11.42□□□□□ -0.58
HDDC3-202ENST00000394272 CASC2Q6XLA1 102 aa11.41□□□□□ -0.58
HDDC3-202ENST00000394272 hDV103S1A0JD37 113 aa11.38□□□□□ -0.59
HDDC3-202ENST00000394272 C8orf87E5RJ46 101 aa11.38□□□□□ -0.59
HDDC3-202ENST00000394272 RETNLBQ9BQ08 111 aa11.36□□□□□ -0.59
HDDC3-202ENST00000394272 UQCRQO14949 82 aa11.35□□□□□ -0.59
HDDC3-202ENST00000394272 OCR1Q9BZK8 76 aa11.35□□□□□ -0.59
HDDC3-202ENST00000394272 COX7CP15954 63 aa11.34□□□□□ -0.59
HDDC3-202ENST00000394272 SMIM20Q8N5G0 67 aa11.34□□□□□ -0.59
HDDC3-202ENST00000394272 LINC00313P59037 77 aa11.33□□□□□ -0.6
HDDC3-202ENST00000394272 SERP2Q8N6R1 65 aa11.33□□□□□ -0.6
HDDC3-202ENST00000394272 TMEM254Q8TBM7 123 aa11.32□□□□□ -0.6
HDDC3-202ENST00000394272 TRAV7A0A075B6U4 112 aa11.32□□□□□ -0.6
HDDC3-202ENST00000394272 MRPL34Q9BQ48 92 aaKnown RBP11.3□□□□□ -0.6
HDDC3-202ENST00000394272 KRTAP16-1A8MUX0 517 aa11.26□□□□□ -0.61
HDDC3-202ENST00000394272 FP248Q71RG6 208 aaPredicted RBP11.23□□□□□ -0.61
HDDC3-202ENST00000394272 Q8N9P0 234 aaPredicted RBP11.2□□□□□ -0.62
HDDC3-202ENST00000394272 NDUFS5O43920 106 aa11.18□□□□□ -0.62
HDDC3-202ENST00000394272 TP53AIP1Q9HCN2 124 aa11.18□□□□□ -0.62
HDDC3-202ENST00000394272 C9orf92A6NGG3 77 aa11.16□□□□□ -0.62
HDDC3-202ENST00000394272 J3QL48 77 aa11.14□□□□□ -0.63
HDDC3-202ENST00000394272 IGLV7-46A0A075B6I9 117 aa11.12□□□□□ -0.63
HDDC3-202ENST00000394272 C5orf47Q569G3 176 aa11.12□□□□□ -0.63
HDDC3-202ENST00000394272 PCLOQ9Y6V0 5065 aa11.12□□□□□ -0.63
HDDC3-202ENST00000394272 C20orf197Q8N268 126 aa11.12□□□□□ -0.63
HDDC3-202ENST00000394272 CYSTM1Q9H1C7 97 aa11.11□□□□□ -0.63
HDDC3-202ENST00000394272 TRAV22A0A0B4J277 110 aa11.08□□□□□ -0.64
HDDC3-202ENST00000394272 H0Y9P7 68 aa11.06□□□□□ -0.64
HDDC3-202ENST00000394272 KLKP1Q107X0 134 aa11.06□□□□□ -0.64
HDDC3-202ENST00000394272 C20orf166-AS1Q96NR2 134 aa11.06□□□□□ -0.64
HDDC3-202ENST00000394272 A0A0U1RQV1 116 aa11.06□□□□□ -0.64
HDDC3-202ENST00000394272 PRR4Q16378 134 aa11.06□□□□□ -0.64
HDDC3-202ENST00000394272 KRTAP13-3Q3SY46 172 aa11.06□□□□□ -0.64
HDDC3-202ENST00000394272 Q5W150 140 aa11.05□□□□□ -0.64
HDDC3-202ENST00000394272 A8MUU9 505 aa11.04□□□□□ -0.64
HDDC3-202ENST00000394272 MP68P56378 58 aa11.04□□□□□ -0.64
HDDC3-202ENST00000394272 SNURFQ9Y675 71 aa11.04□□□□□ -0.64
HDDC3-202ENST00000394272 ZCCHC13Q8WW36 166 aaKnown RBP11.01□□□□□ -0.65
HDDC3-202ENST00000394272 TMEM258P61165 79 aa11□□□□□ -0.65
HDDC3-202ENST00000394272 H3BPC8 53 aa11□□□□□ -0.65
HDDC3-202ENST00000394272 LINC00208Q96KT6 92 aa10.99□□□□□ -0.65
HDDC3-202ENST00000394272 Q75L30 129 aa10.98□□□□□ -0.65
HDDC3-202ENST00000394272 TPRXLQ17RH7 258 aa10.96□□□□□ -0.65
HDDC3-202ENST00000394272 C1orf64Q8NEQ6 169 aa10.95□□□□□ -0.66
HDDC3-202ENST00000394272 XP32Q5T750 250 aa10.95□□□□□ -0.66
HDDC3-202ENST00000394272 LPAP08519 4548 aa10.94□□□□□ -0.66
HDDC3-202ENST00000394272 H7BZZ5 65 aa10.91□□□□□ -0.66
HDDC3-202ENST00000394272 NDUFC1O43677 76 aa10.89□□□□□ -0.67
HDDC3-202ENST00000394272 RPL37P61927 97 aaKnown RBP10.88□□□□□ -0.67
HDDC3-202ENST00000394272 LRP2P98164 4655 aa10.88□□□□□ -0.67
HDDC3-202ENST00000394272 LOC101927531A0A1B0GV80 90 aa10.87□□□□□ -0.67
HDDC3-202ENST00000394272 HERC1Q15751 4861 aa10.85□□□□□ -0.67
HDDC3-202ENST00000394272 IGKV2-30P06310 120 aa10.83□□□□□ -0.68
HDDC3-202ENST00000394272 CYP4F30PQ9H0H9 118 aa10.83□□□□□ -0.68
HDDC3-202ENST00000394272 FAM236DA0A1B0GTK5 79 aa10.82□□□□□ -0.68
HDDC3-202ENST00000394272 FAM236CP0DP71 79 aa10.82□□□□□ -0.68
HDDC3-202ENST00000394272 RPS28P62857 69 aaKnown RBP10.82□□□□□ -0.68
HDDC3-202ENST00000394272 ATP11AUNQ6ZP68 121 aa10.78□□□□□ -0.68
HDDC3-202ENST00000394272 IGKV2D-30A0A075B6S6 120 aa10.76□□□□□ -0.69
HDDC3-202ENST00000394272 PCOTHQ58A44 107 aa10.76□□□□□ -0.69
HDDC3-202ENST00000394272 C7orf65Q6ZTY9 151 aa10.73□□□□□ -0.69
HDDC3-202ENST00000394272 HMCN2Q8NDA2 5059 aa10.71□□□□□ -0.69
HDDC3-202ENST00000394272 ATP5EP56381 51 aaPredicted RBP10.69□□□□□ -0.7
HDDC3-202ENST00000394272 SPANXA2-OT1Q8N9U9 137 aa10.68□□□□□ -0.7
HDDC3-202ENST00000394272 SERP1Q9Y6X1 66 aa10.67□□□□□ -0.7
HDDC3-202ENST00000394272 SPINK7P58062 85 aa10.66□□□□□ -0.7
HDDC3-202ENST00000394272 HRES1P13985 223 aa10.64□□□□□ -0.71
HDDC3-202ENST00000394272 MUC17Q685J3 4493 aa10.61□□□□□ -0.71
HDDC3-202ENST00000394272 SEC61BP60468 96 aaKnown RBP10.55□□□□□ -0.72
HDDC3-202ENST00000394272 C4orf26Q17RF5 130 aa10.5□□□□□ -0.73
HDDC3-202ENST00000394272 DMAC1Q96GE9 116 aa10.48□□□□□ -0.73
HDDC3-202ENST00000394272 SMIM26A0A096LP01 95 aa10.44□□□□□ -0.74
HDDC3-202ENST00000394272 KRTAP3-1Q9BYR8 98 aa10.4□□□□□ -0.75
HDDC3-202ENST00000394272 COX6B2Q6YFQ2 88 aa10.39□□□□□ -0.75
HDDC3-202ENST00000394272 ACYP2P14621 99 aa10.38□□□□□ -0.75
HDDC3-202ENST00000394272 A8MUN3 132 aa10.38□□□□□ -0.75
HDDC3-202ENST00000394272 KRTAP4-1Q9BYQ7 146 aa10.38□□□□□ -0.75
HDDC3-202ENST00000394272 MPLKIPQ8TAP9 179 aa10.36□□□□□ -0.75
HDDC3-202ENST00000394272 COA5Q86WW8 74 aa10.35□□□□□ -0.75
HDDC3-202ENST00000394272 MUC2Q02817 5179 aa10.26□□□□□ -0.77
HDDC3-202ENST00000394272 RBM12B-AS1Q9P1G2 102 aa10.24□□□□□ -0.77
HDDC3-202ENST00000394272 UBR4Q5T4S7 5183 aa10.22□□□□□ -0.77
HDDC3-202ENST00000394272 CHKB-CPT1BH3BT56 60 aa10.19□□□□□ -0.78
HDDC3-202ENST00000394272 H1FX-AS1Q4G0G2 97 aa10.15□□□□□ -0.79
HDDC3-202ENST00000394272 Q1T7F1 81 aa10.13□□□□□ -0.79
HDDC3-202ENST00000394272 SVIPQ8NHG7 77 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms