RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 MAP1AP78559 2803 aaPredicted RBP6.74□□□□□ -1.33
CHD3-203ENST00000380358 Q6ZRN7 208 aaPredicted RBP6.72□□□□□ -1.33
CHD3-203ENST00000380358 ASB16-AS1Q495Z4 193 aa6.69□□□□□ -1.34
CHD3-203ENST00000380358 KRTAP7-1Q8IUC3 87 aa6.69□□□□□ -1.34
CHD3-203ENST00000380358 NSD1Q96L73 2696 aaPredicted RBP6.69□□□□□ -1.34
CHD3-203ENST00000380358 CHD9Q3L8U1 2897 aa6.68□□□□□ -1.34
CHD3-203ENST00000380358 RPS29P62273 56 aaKnown RBP6.67□□□□□ -1.34
CHD3-203ENST00000380358 ASPMQ8IZT6 3477 aa6.67□□□□□ -1.34
CHD3-203ENST00000380358 KALRNO60229 2985 aa6.66□□□□□ -1.34
CHD3-203ENST00000380358 IGSF10Q6WRI0 2623 aa6.65□□□□□ -1.34
CHD3-203ENST00000380358 DMDP11532 3685 aa6.65□□□□□ -1.34
CHD3-203ENST00000380358 ASH1LQ9NR48 2969 aaKnown RBP6.65□□□□□ -1.34
CHD3-203ENST00000380358 PRO2289Q9P1D8 64 aa6.64□□□□□ -1.35
CHD3-203ENST00000380358 APCP25054 2843 aa6.64□□□□□ -1.35
CHD3-203ENST00000380358 ITPR2Q14571 2701 aa6.63□□□□□ -1.35
CHD3-203ENST00000380358 ZNF292O60281 2723 aa6.63□□□□□ -1.35
CHD3-203ENST00000380358 XP32Q5T750 250 aa6.62□□□□□ -1.35
CHD3-203ENST00000380358 DSPP15924 2871 aaKnown RBP6.59□□□□□ -1.35
CHD3-203ENST00000380358 MUC3AQ02505 3323 aa6.56□□□□□ -1.36
CHD3-203ENST00000380358 COL12A1Q99715 3063 aa6.55□□□□□ -1.36
CHD3-203ENST00000380358 BOD1L1Q8NFC6 3051 aa6.53□□□□□ -1.36
CHD3-203ENST00000380358 DCHS1Q96JQ0 3298 aa6.52□□□□□ -1.37
CHD3-203ENST00000380358 LOC400499M0QZD8 3231 aa6.52□□□□□ -1.37
CHD3-203ENST00000380358 PP632Q6XCG6 107 aa6.51□□□□□ -1.37
CHD3-203ENST00000380358 HIVEP1P15822 2718 aa6.51□□□□□ -1.37
CHD3-203ENST00000380358 UBR5O95071 2799 aaPredicted RBP6.51□□□□□ -1.37
CHD3-203ENST00000380358 TACC2O95359 2948 aa6.5□□□□□ -1.37
CHD3-203ENST00000380358 KRTAP13-1Q8IUC0 172 aa6.5□□□□□ -1.37
CHD3-203ENST00000380358 ATMQ13315 3056 aa6.5□□□□□ -1.37
CHD3-203ENST00000380358 ZFHX4Q86UP3 3567 aa6.49□□□□□ -1.37
CHD3-203ENST00000380358 NBEAQ8NFP9 2946 aa6.49□□□□□ -1.37
CHD3-203ENST00000380358 LRBAP50851 2863 aa6.47□□□□□ -1.37
CHD3-203ENST00000380358 H0YAA0 97 aa6.46□□□□□ -1.37
CHD3-203ENST00000380358 LAMA5O15230 3695 aa6.45□□□□□ -1.38
CHD3-203ENST00000380358 UTP20O75691 2785 aaKnown RBP6.43□□□□□ -1.38
CHD3-203ENST00000380358 CRCT1Q9UGL9 99 aa6.42□□□□□ -1.38
CHD3-203ENST00000380358 ZZEF1O43149 2961 aa6.35□□□□□ -1.39
CHD3-203ENST00000380358 KRTAP12-2P59991 146 aa6.34□□□□□ -1.39
CHD3-203ENST00000380358 TPRXLQ17RH7 258 aa6.34□□□□□ -1.39
CHD3-203ENST00000380358 KRTAP1-4P0C5Y4 121 aa6.33□□□□□ -1.4
CHD3-203ENST00000380358 ADGRG4Q8IZF6 3080 aa6.31□□□□□ -1.4
CHD3-203ENST00000380358 CSMD1Q96PZ7 3565 aa6.31□□□□□ -1.4
CHD3-203ENST00000380358 SMG1Q96Q15 3661 aaKnown RBP6.3□□□□□ -1.4
CHD3-203ENST00000380358 ITPR1Q14643 2758 aa6.29□□□□□ -1.4
CHD3-203ENST00000380358 DMXL1Q9Y485 3027 aa6.27□□□□□ -1.41
CHD3-203ENST00000380358 FLNCQ14315 2725 aa6.26□□□□□ -1.41
CHD3-203ENST00000380358 CELSR2Q9HCU4 2923 aa6.25□□□□□ -1.41
CHD3-203ENST00000380358 TNRC18O15417 2968 aaPredicted RBP6.24□□□□□ -1.41
CHD3-203ENST00000380358 RELNP78509 3460 aa6.23□□□□□ -1.41
CHD3-203ENST00000380358 TENM1Q9UKZ4 2725 aa6.23□□□□□ -1.41
CHD3-203ENST00000380358 KRTAP13-3Q3SY46 172 aa6.23□□□□□ -1.41
CHD3-203ENST00000380358 SPENQ96T58 3664 aaKnown RBP6.21□□□□□ -1.42
CHD3-203ENST00000380358 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.42
CHD3-203ENST00000380358 TENM4Q6N022 2769 aa6.21□□□□□ -1.42
CHD3-203ENST00000380358 SVEP1Q4LDE5 3571 aa6.19□□□□□ -1.42
CHD3-203ENST00000380358 CELSR1Q9NYQ6 3014 aa6.18□□□□□ -1.42
CHD3-203ENST00000380358 KRTAP21-3Q3LHN1 58 aa6.14□□□□□ -1.43
CHD3-203ENST00000380358 NBPF19A0A087WUL8 3843 aa6.12□□□□□ -1.43
CHD3-203ENST00000380358 CUBNO60494 3623 aa6.11□□□□□ -1.43
CHD3-203ENST00000380358 TENM2Q9NT68 2774 aa6.09□□□□□ -1.43
CHD3-203ENST00000380358 DCHS2Q6V1P9 2916 aa6.09□□□□□ -1.43
CHD3-203ENST00000380358 NF1P21359 2839 aa6.08□□□□□ -1.44
CHD3-203ENST00000380358 TENM3Q9P273 2699 aa6.05□□□□□ -1.44
CHD3-203ENST00000380358 ZFHX3Q15911 3703 aa6.05□□□□□ -1.44
CHD3-203ENST00000380358 TGP01266 2768 aa6.02□□□□□ -1.45
CHD3-203ENST00000380358 VWFP04275 2813 aa6.01□□□□□ -1.45
CHD3-203ENST00000380358 PKD1L1Q8TDX9 2849 aa6.01□□□□□ -1.45
CHD3-203ENST00000380358 KRTAP13-4Q3LI77 160 aa6□□□□□ -1.45
CHD3-203ENST00000380358 PDZD2O15018 2839 aa6□□□□□ -1.45
CHD3-203ENST00000380358 NIPBLQ6KC79 2804 aaeCLIP5.94□□□□□ -1.461e-6■■■□□ 16.9
CHD3-203ENST00000380358 ZANQ9Y493 2812 aa5.93□□□□□ -1.46
CHD3-203ENST00000380358 CSMD2Q7Z408 3487 aa5.93□□□□□ -1.46
CHD3-203ENST00000380358 KRTAP12-1P59990 96 aa5.93□□□□□ -1.46
CHD3-203ENST00000380358 BSNQ9UPA5 3926 aa5.91□□□□□ -1.46
CHD3-203ENST00000380358 VPS13CQ709C8 3753 aa5.9□□□□□ -1.47
CHD3-203ENST00000380358 FBN2P35556 2912 aa5.83□□□□□ -1.48
CHD3-203ENST00000380358 HRNRQ86YZ3 2850 aaPredicted RBP5.71□□□□□ -1.49
CHD3-203ENST00000380358 KRTAP10-12P60413 245 aa5.71□□□□□ -1.5
CHD3-203ENST00000380358 LORP23490 312 aaPredicted RBP5.68□□□□□ -1.5
CHD3-203ENST00000380358 KRTAP3-1Q9BYR8 98 aa5.66□□□□□ -1.5
CHD3-203ENST00000380358 KRTAP10-5P60370 271 aa5.66□□□□□ -1.5
CHD3-203ENST00000380358 SRRM2Q9UQ35 2752 aaKnown RBP5.64□□□□□ -1.51
CHD3-203ENST00000380358 KRTAP10-6P60371 365 aaPredicted RBP5.58□□□□□ -1.52
CHD3-203ENST00000380358 MXRA5Q9NR99 2828 aa5.56□□□□□ -1.52
CHD3-203ENST00000380358 MEGF8Q7Z7M0 2845 aa5.55□□□□□ -1.52
CHD3-203ENST00000380358 KRTAP4-5Q9BYR2 181 aa5.51□□□□□ -1.53
CHD3-203ENST00000380358 COL7A1Q02388 2944 aa5.49□□□□□ -1.53
CHD3-203ENST00000380358 LCE3AQ5TA76 89 aa5.48□□□□□ -1.53
CHD3-203ENST00000380358 KRTAP12-3P60328 96 aa5.48□□□□□ -1.53
CHD3-203ENST00000380358 INE1O15225 51 aa5.47□□□□□ -1.53
CHD3-203ENST00000380358 ZNF469Q96JG9 3925 aaPredicted RBP5.46□□□□□ -1.54
CHD3-203ENST00000380358 KRTAP8-1Q8IUC2 63 aa5.45□□□□□ -1.54
CHD3-203ENST00000380358 AKAP9Q99996 3911 aa5.38□□□□□ -1.55
CHD3-203ENST00000380358 CSMD3Q7Z407 3707 aa5.38□□□□□ -1.55
CHD3-203ENST00000380358 FBN3Q75N90 2809 aa5.37□□□□□ -1.55
CHD3-203ENST00000380358 MT1HL1P0DM35 61 aa5.31□□□□□ -1.56
CHD3-203ENST00000380358 FBN1P35555 2871 aaKnown RBP5.29□□□□□ -1.56
CHD3-203ENST00000380358 TRRAPQ9Y4A5 3859 aa5.26□□□□□ -1.57
CHD3-203ENST00000380358 KRTAP3-3Q9BYR6 98 aa5.23□□□□□ -1.57
CHD3-203ENST00000380358 KRTAP3-2Q9BYR7 98 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms