RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 A8MUU9 505 aa5.39□□□□□ -1.55
SNX1-202ENST00000380285 EYSQ5T1H1 3165 aa5.38□□□□□ -1.55
SNX1-202ENST00000380285 APCP25054 2843 aa5.37□□□□□ -1.55
SNX1-202ENST00000380285 KRTAP11-1Q8IUC1 163 aa5.37□□□□□ -1.55
SNX1-202ENST00000380285 BOD1L1Q8NFC6 3051 aa5.37□□□□□ -1.55
SNX1-202ENST00000380285 DMXL2Q8TDJ6 3036 aa5.37□□□□□ -1.55
SNX1-202ENST00000380285 A8MU10 97 aa5.37□□□□□ -1.55
SNX1-202ENST00000380285 DCHS1Q96JQ0 3298 aa5.34□□□□□ -1.55
SNX1-202ENST00000380285 PP632Q6XCG6 107 aa5.34□□□□□ -1.55
SNX1-202ENST00000380285 ITPR1Q14643 2758 aa5.33□□□□□ -1.56
SNX1-202ENST00000380285 KRTAP13-2Q52LG2 175 aa5.33□□□□□ -1.56
SNX1-202ENST00000380285 ATMQ13315 3056 aa5.31□□□□□ -1.56
SNX1-202ENST00000380285 IGSF10Q6WRI0 2623 aa5.3□□□□□ -1.56
SNX1-202ENST00000380285 DMXL1Q9Y485 3027 aa5.3□□□□□ -1.56
SNX1-202ENST00000380285 ADGRG4Q8IZF6 3080 aa5.3□□□□□ -1.56
SNX1-202ENST00000380285 UBR5O95071 2799 aaPredicted RBP5.29□□□□□ -1.56
SNX1-202ENST00000380285 BAHCC1Q9P281 2608 aa5.29□□□□□ -1.56
SNX1-202ENST00000380285 TNP1P09430 55 aa5.29□□□□□ -1.56
SNX1-202ENST00000380285 ASPMQ8IZT6 3477 aa5.27□□□□□ -1.57
SNX1-202ENST00000380285 SPTBN5Q9NRC6 3674 aaKnown RBP5.25□□□□□ -1.57
SNX1-202ENST00000380285 LOC400499M0QZD8 3231 aa5.25□□□□□ -1.57
SNX1-202ENST00000380285 C10orf95Q9H7T3 257 aa5.24□□□□□ -1.57
SNX1-202ENST00000380285 UTP20O75691 2785 aaKnown RBP5.21□□□□□ -1.57
SNX1-202ENST00000380285 ASH1LQ9NR48 2969 aaKnown RBP5.19□□□□□ -1.58
SNX1-202ENST00000380285 TNRC18O15417 2968 aaPredicted RBP5.18□□□□□ -1.58
SNX1-202ENST00000380285 LRBAP50851 2863 aa5.18□□□□□ -1.58
SNX1-202ENST00000380285 H0YAA0 97 aa5.15□□□□□ -1.58
SNX1-202ENST00000380285 NIPBLQ6KC79 2804 aaeCLIP5.14□□□□□ -1.59
SNX1-202ENST00000380285 P0C880 135 aa5.13□□□□□ -1.59
SNX1-202ENST00000380285 ZZEF1O43149 2961 aa5.13□□□□□ -1.59
SNX1-202ENST00000380285 FLNCQ14315 2725 aa5.11□□□□□ -1.59
SNX1-202ENST00000380285 COL12A1Q99715 3063 aa5.09□□□□□ -1.59
SNX1-202ENST00000380285 ZFHX4Q86UP3 3567 aa5.08□□□□□ -1.6
SNX1-202ENST00000380285 KRTAP1-4P0C5Y4 121 aa5.07□□□□□ -1.6
SNX1-202ENST00000380285 KRTAP21-3Q3LHN1 58 aa5.05□□□□□ -1.6
SNX1-202ENST00000380285 CUBNO60494 3623 aa5.04□□□□□ -1.6
SNX1-202ENST00000380285 HIVEP1P15822 2718 aa5.04□□□□□ -1.6
SNX1-202ENST00000380285 XP32Q5T750 250 aa5.04□□□□□ -1.6
SNX1-202ENST00000380285 DMDP11532 3685 aa5.04□□□□□ -1.6
SNX1-202ENST00000380285 CSMD1Q96PZ7 3565 aa5.02□□□□□ -1.61
SNX1-202ENST00000380285 CRYBG3Q68DQ2 2970 aa5.01□□□□□ -1.61
SNX1-202ENST00000380285 TPRXLQ17RH7 258 aa5.01□□□□□ -1.61
SNX1-202ENST00000380285 LAMA5O15230 3695 aa5□□□□□ -1.61
SNX1-202ENST00000380285 MUC3AQ02505 3323 aa5□□□□□ -1.61
SNX1-202ENST00000380285 SPENQ96T58 3664 aaKnown RBP4.98□□□□□ -1.61
SNX1-202ENST00000380285 KRTAP10-8P60410 259 aa4.98□□□□□ -1.61
SNX1-202ENST00000380285 KRTAP13-3Q3SY46 172 aa4.98□□□□□ -1.61
SNX1-202ENST00000380285 CELSR2Q9HCU4 2923 aa4.98□□□□□ -1.61
SNX1-202ENST00000380285 SMG1Q96Q15 3661 aaKnown RBP4.97□□□□□ -1.61
SNX1-202ENST00000380285 NF1P21359 2839 aa4.96□□□□□ -1.62
SNX1-202ENST00000380285 ZANQ9Y493 2812 aa4.95□□□□□ -1.62
SNX1-202ENST00000380285 RELNP78509 3460 aa4.93□□□□□ -1.62
SNX1-202ENST00000380285 TGP01266 2768 aa4.92□□□□□ -1.62
SNX1-202ENST00000380285 SVEP1Q4LDE5 3571 aa4.92□□□□□ -1.62
SNX1-202ENST00000380285 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
SNX1-202ENST00000380285 FBN2P35556 2912 aa4.9□□□□□ -1.63
SNX1-202ENST00000380285 CELSR1Q9NYQ6 3014 aa4.89□□□□□ -1.63
SNX1-202ENST00000380285 DCHS2Q6V1P9 2916 aa4.89□□□□□ -1.63
SNX1-202ENST00000380285 HRNRQ86YZ3 2850 aaPredicted RBP4.89□□□□□ -1.63
SNX1-202ENST00000380285 TENM1Q9UKZ4 2725 aa4.85□□□□□ -1.63
SNX1-202ENST00000380285 TENM4Q6N022 2769 aa4.82□□□□□ -1.64
SNX1-202ENST00000380285 KRTAP13-4Q3LI77 160 aa4.81□□□□□ -1.64
SNX1-202ENST00000380285 A0A1B0GVY2 172 aa4.8□□□□□ -1.64
SNX1-202ENST00000380285 TENM3Q9P273 2699 aa4.79□□□□□ -1.64
SNX1-202ENST00000380285 KRTAP23-1A1A580 65 aa4.77□□□□□ -1.65
SNX1-202ENST00000380285 MXRA5Q9NR99 2828 aa4.77□□□□□ -1.65
SNX1-202ENST00000380285 KRTAP12-2P59991 146 aa4.77□□□□□ -1.65
SNX1-202ENST00000380285 KRTAP10-10P60014 251 aa4.74□□□□□ -1.65
SNX1-202ENST00000380285 KRTAP12-1P59990 96 aa4.73□□□□□ -1.65
SNX1-202ENST00000380285 PDZD2O15018 2839 aa4.67□□□□□ -1.66
SNX1-202ENST00000380285 CSMD2Q7Z408 3487 aa4.66□□□□□ -1.66
SNX1-202ENST00000380285 INE1O15225 51 aa4.64□□□□□ -1.67
SNX1-202ENST00000380285 KRTAP3-1Q9BYR8 98 aa4.61□□□□□ -1.67
SNX1-202ENST00000380285 NBPF19A0A087WUL8 3843 aa4.61□□□□□ -1.67
SNX1-202ENST00000380285 TENM2Q9NT68 2774 aa4.6□□□□□ -1.67
SNX1-202ENST00000380285 KRTAP10-6P60371 365 aaPredicted RBP4.56□□□□□ -1.68
SNX1-202ENST00000380285 SRRM2Q9UQ35 2752 aaKnown RBP4.55□□□□□ -1.68
SNX1-202ENST00000380285 KRTAP15-1Q3LI76 137 aa4.53□□□□□ -1.68
SNX1-202ENST00000380285 PKD1L1Q8TDX9 2849 aa4.52□□□□□ -1.69
SNX1-202ENST00000380285 VWFP04275 2813 aa4.49□□□□□ -1.69
SNX1-202ENST00000380285 ZFHX3Q15911 3703 aa4.48□□□□□ -1.69
SNX1-202ENST00000380285 FBN1P35555 2871 aaKnown RBP4.42□□□□□ -1.7
SNX1-202ENST00000380285 VPS13CQ709C8 3753 aa4.42□□□□□ -1.7
SNX1-202ENST00000380285 MEGF8Q7Z7M0 2845 aa4.39□□□□□ -1.71
SNX1-202ENST00000380285 KRTAP3-2Q9BYR7 98 aa4.38□□□□□ -1.71
SNX1-202ENST00000380285 FBN3Q75N90 2809 aa4.36□□□□□ -1.71
SNX1-202ENST00000380285 OTOGQ6ZRI0 2925 aa4.36□□□□□ -1.71
SNX1-202ENST00000380285 KRTAP3-3Q9BYR6 98 aa4.35□□□□□ -1.71
SNX1-202ENST00000380285 COL7A1Q02388 2944 aa4.33□□□□□ -1.72
SNX1-202ENST00000380285 BSNQ9UPA5 3926 aa4.33□□□□□ -1.72
SNX1-202ENST00000380285 KRTAP10-12P60413 245 aa4.28□□□□□ -1.72
SNX1-202ENST00000380285 MT1HL1P0DM35 61 aa4.2□□□□□ -1.74
SNX1-202ENST00000380285 CRCT1Q9UGL9 99 aa4.19□□□□□ -1.74
SNX1-202ENST00000380285 KRTAP12-3P60328 96 aa4.18□□□□□ -1.74
SNX1-202ENST00000380285 TRRAPQ9Y4A5 3859 aa4.17□□□□□ -1.74
SNX1-202ENST00000380285 CSMD3Q7Z407 3707 aa4.17□□□□□ -1.74
SNX1-202ENST00000380285 KRTAP10-4P60372 401 aaPredicted RBP4.13□□□□□ -1.75
SNX1-202ENST00000380285 ANK3Q12955 4377 aaKnown RBP4.12□□□□□ -1.75
SNX1-202ENST00000380285 AKAP9Q99996 3911 aa4.12□□□□□ -1.75
SNX1-202ENST00000380285 ZNF469Q96JG9 3925 aaPredicted RBP4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms