RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FLNCQ14315 2725 aa8.97□□□□□ -0.97
COL17A1-202ENST00000369733 NDUFAF8A1L188 74 aa8.96□□□□□ -0.98
COL17A1-202ENST00000369733 CFAP47Q6ZTR5 3102 aa8.94□□□□□ -0.98
COL17A1-202ENST00000369733 UTP20O75691 2785 aaKnown RBP8.93□□□□□ -0.98
COL17A1-202ENST00000369733 RPS29P62273 56 aaKnown RBP8.92□□□□□ -0.98
COL17A1-202ENST00000369733 STAB2Q8WWQ8 2551 aa8.91□□□□□ -0.98
COL17A1-202ENST00000369733 Q5VSD8 79 aa8.91□□□□□ -0.98
COL17A1-202ENST00000369733 USP34Q70CQ2 3546 aa8.91□□□□□ -0.98
COL17A1-202ENST00000369733 ITPR2Q14571 2701 aa8.9□□□□□ -0.99
COL17A1-202ENST00000369733 NSD1Q96L73 2696 aaPredicted RBP8.9□□□□□ -0.99
COL17A1-202ENST00000369733 SEC61BP60468 96 aaKnown RBP8.85□□□□□ -0.99
COL17A1-202ENST00000369733 HIVEP1P15822 2718 aa8.84□□□□□ -0.99
COL17A1-202ENST00000369733 FLG2Q5D862 2391 aaPredicted RBP8.84□□□□□ -0.99
COL17A1-202ENST00000369733 M0R2T5 61 aa8.82□□□□□ -1
COL17A1-202ENST00000369733 HRNRQ86YZ3 2850 aaPredicted RBP8.81□□□□□ -1
COL17A1-202ENST00000369733 A8MUU9 505 aa8.79□□□□□ -1
COL17A1-202ENST00000369733 MYO15AQ9UKN7 3530 aa8.77□□□□□ -1.01
COL17A1-202ENST00000369733 TNRC18O15417 2968 aaPredicted RBP8.75□□□□□ -1.01
COL17A1-202ENST00000369733 ZANQ9Y493 2812 aa8.75□□□□□ -1.01
COL17A1-202ENST00000369733 CELSR2Q9HCU4 2923 aa8.74□□□□□ -1.01
COL17A1-202ENST00000369733 LOC400499M0QZD8 3231 aa8.74□□□□□ -1.01
COL17A1-202ENST00000369733 EYSQ5T1H1 3165 aa8.72□□□□□ -1.01
COL17A1-202ENST00000369733 NIPBLQ6KC79 2804 aaeCLIP8.71□□□□□ -1.02
COL17A1-202ENST00000369733 KMT2BQ9UMN6 2715 aaPredicted RBP8.7□□□□□ -1.02
COL17A1-202ENST00000369733 C20orf166-AS1Q96NR2 134 aa8.65□□□□□ -1.02
COL17A1-202ENST00000369733 H0YAA0 97 aa8.64□□□□□ -1.03
COL17A1-202ENST00000369733 DMXL1Q9Y485 3027 aa8.63□□□□□ -1.03
COL17A1-202ENST00000369733 DCHS2Q6V1P9 2916 aa8.62□□□□□ -1.03
COL17A1-202ENST00000369733 FBN2P35556 2912 aa8.61□□□□□ -1.03
COL17A1-202ENST00000369733 PLAC4Q8WY50 150 aa8.58□□□□□ -1.04
COL17A1-202ENST00000369733 KRTAP1-4P0C5Y4 121 aa8.54□□□□□ -1.04
COL17A1-202ENST00000369733 C10orf95Q9H7T3 257 aa8.54□□□□□ -1.04
COL17A1-202ENST00000369733 WDFY3Q8IZQ1 3526 aa8.52□□□□□ -1.05
COL17A1-202ENST00000369733 NF1P21359 2839 aa8.49□□□□□ -1.05
COL17A1-202ENST00000369733 KRTAP13-3Q3SY46 172 aa8.43□□□□□ -1.06
COL17A1-202ENST00000369733 CRYBG3Q68DQ2 2970 aa8.43□□□□□ -1.06
COL17A1-202ENST00000369733 DCHS1Q96JQ0 3298 aa8.4□□□□□ -1.06
COL17A1-202ENST00000369733 ZFHX4Q86UP3 3567 aa8.4□□□□□ -1.07
COL17A1-202ENST00000369733 MXRA5Q9NR99 2828 aa8.37□□□□□ -1.07
COL17A1-202ENST00000369733 TNP1P09430 55 aa8.34□□□□□ -1.07
COL17A1-202ENST00000369733 RELNP78509 3460 aa8.34□□□□□ -1.07
COL17A1-202ENST00000369733 P0C880 135 aa8.32□□□□□ -1.08
COL17A1-202ENST00000369733 XP32Q5T750 250 aa8.32□□□□□ -1.08
COL17A1-202ENST00000369733 CSMD1Q96PZ7 3565 aa8.31□□□□□ -1.08
COL17A1-202ENST00000369733 CELSR1Q9NYQ6 3014 aa8.27□□□□□ -1.08
COL17A1-202ENST00000369733 PP632Q6XCG6 107 aa8.27□□□□□ -1.09
COL17A1-202ENST00000369733 ASPMQ8IZT6 3477 aa8.26□□□□□ -1.09
COL17A1-202ENST00000369733 TGP01266 2768 aa8.25□□□□□ -1.09
COL17A1-202ENST00000369733 TENM4Q6N022 2769 aa8.25□□□□□ -1.09
COL17A1-202ENST00000369733 TENM3Q9P273 2699 aa8.22□□□□□ -1.09
COL17A1-202ENST00000369733 SMG1Q96Q15 3661 aaKnown RBP8.2□□□□□ -1.1
COL17A1-202ENST00000369733 LAMA5O15230 3695 aa8.16□□□□□ -1.1
COL17A1-202ENST00000369733 KRTAP10-8P60410 259 aa8.15□□□□□ -1.11
COL17A1-202ENST00000369733 DMDP11532 3685 aa8.04□□□□□ -1.12
COL17A1-202ENST00000369733 KRTAP12-2P59991 146 aa8.03□□□□□ -1.12
COL17A1-202ENST00000369733 TPRXLQ17RH7 258 aa8.01□□□□□ -1.13
COL17A1-202ENST00000369733 TENM1Q9UKZ4 2725 aa8□□□□□ -1.13
COL17A1-202ENST00000369733 PDZD2O15018 2839 aa7.99□□□□□ -1.13
COL17A1-202ENST00000369733 SVEP1Q4LDE5 3571 aa7.98□□□□□ -1.13
COL17A1-202ENST00000369733 A0A1B0GVY2 172 aa7.97□□□□□ -1.13
COL17A1-202ENST00000369733 KRTAP3-1Q9BYR8 98 aa7.96□□□□□ -1.14
COL17A1-202ENST00000369733 KRTAP21-3Q3LHN1 58 aa7.89□□□□□ -1.15
COL17A1-202ENST00000369733 TENM2Q9NT68 2774 aa7.88□□□□□ -1.15
COL17A1-202ENST00000369733 KRTAP12-1P59990 96 aa7.88□□□□□ -1.15
COL17A1-202ENST00000369733 VWFP04275 2813 aa7.83□□□□□ -1.16
COL17A1-202ENST00000369733 KRTAP13-4Q3LI77 160 aa7.78□□□□□ -1.16
COL17A1-202ENST00000369733 PKD1L1Q8TDX9 2849 aa7.77□□□□□ -1.17
COL17A1-202ENST00000369733 NBPF19A0A087WUL8 3843 aa7.77□□□□□ -1.17
COL17A1-202ENST00000369733 KRTAP10-6P60371 365 aaPredicted RBP7.74□□□□□ -1.17
COL17A1-202ENST00000369733 CUBNO60494 3623 aa7.74□□□□□ -1.17
COL17A1-202ENST00000369733 ANK3Q12955 4377 aaKnown RBP7.74□□□□□ -1.17
COL17A1-202ENST00000369733 MUC3AQ02505 3323 aa7.72□□□□□ -1.17
COL17A1-202ENST00000369733 FBN1P35555 2871 aaKnown RBP7.72□□□□□ -1.17
COL17A1-202ENST00000369733 SPENQ96T58 3664 aaKnown RBP7.69□□□□□ -1.18
COL17A1-202ENST00000369733 KRTAP10-10P60014 251 aa7.67□□□□□ -1.18
COL17A1-202ENST00000369733 OTOGQ6ZRI0 2925 aa7.6□□□□□ -1.19
COL17A1-202ENST00000369733 FBN3Q75N90 2809 aa7.59□□□□□ -1.19
COL17A1-202ENST00000369733 SRRM2Q9UQ35 2752 aaKnown RBP7.57□□□□□ -1.2
COL17A1-202ENST00000369733 KRTAP15-1Q3LI76 137 aa7.57□□□□□ -1.2
COL17A1-202ENST00000369733 BSNQ9UPA5 3926 aa7.56□□□□□ -1.2
COL17A1-202ENST00000369733 CSMD2Q7Z408 3487 aa7.54□□□□□ -1.2
COL17A1-202ENST00000369733 PRO2289Q9P1D8 64 aa7.52□□□□□ -1.2
COL17A1-202ENST00000369733 TRRAPQ9Y4A5 3859 aa7.51□□□□□ -1.21
COL17A1-202ENST00000369733 MEGF8Q7Z7M0 2845 aa7.5□□□□□ -1.21
COL17A1-202ENST00000369733 KRTAP3-2Q9BYR7 98 aa7.49□□□□□ -1.21
COL17A1-202ENST00000369733 KRTAP3-3Q9BYR6 98 aa7.46□□□□□ -1.21
COL17A1-202ENST00000369733 ZFHX3Q15911 3703 aa7.43□□□□□ -1.22
COL17A1-202ENST00000369733 VPS13CQ709C8 3753 aa7.4□□□□□ -1.23
COL17A1-202ENST00000369733 HUWE1Q7Z6Z7 4374 aaKnown RBP7.33□□□□□ -1.24
COL17A1-202ENST00000369733 COL7A1Q02388 2944 aa7.24□□□□□ -1.25
COL17A1-202ENST00000369733 MT1HL1P0DM35 61 aa7.17□□□□□ -1.26
COL17A1-202ENST00000369733 INE1O15225 51 aa7.15□□□□□ -1.26
COL17A1-202ENST00000369733 KRTAP10-4P60372 401 aaPredicted RBP7.15□□□□□ -1.26
COL17A1-202ENST00000369733 CSMD3Q7Z407 3707 aa7.07□□□□□ -1.28
COL17A1-202ENST00000369733 AKAP9Q99996 3911 aa7.06□□□□□ -1.28
COL17A1-202ENST00000369733 LORP23490 312 aaPredicted RBP6.94□□□□□ -1.3
COL17A1-202ENST00000369733 KRTAP23-1A1A580 65 aa6.93□□□□□ -1.3
COL17A1-202ENST00000369733 ZNF469Q96JG9 3925 aaPredicted RBP6.92□□□□□ -1.3
COL17A1-202ENST00000369733 KRTAP10-12P60413 245 aa6.9□□□□□ -1.3
COL17A1-202ENST00000369733 DNAH9Q9NYC9 4486 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms