RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 COX7CP15954 63 aa12.45□□□□□ -0.42
HOXA4-201ENST00000360046 CXCL6P80162 114 aa12.45□□□□□ -0.42
HOXA4-201ENST00000360046 IGKV4-1P06312 121 aa12.44□□□□□ -0.42
HOXA4-201ENST00000360046 C1orf195Q5TG92 126 aa12.44□□□□□ -0.42
HOXA4-201ENST00000360046 J3KT08 172 aa12.4□□□□□ -0.42
HOXA4-201ENST00000360046 SERP2Q8N6R1 65 aa12.4□□□□□ -0.43
HOXA4-201ENST00000360046 A0A087WVE0 104 aa12.39□□□□□ -0.43
HOXA4-201ENST00000360046 RETNLBQ9BQ08 111 aa12.39□□□□□ -0.43
HOXA4-201ENST00000360046 DSCR10P59022 87 aa12.37□□□□□ -0.43
HOXA4-201ENST00000360046 Q8N9L7 120 aa12.35□□□□□ -0.43
HOXA4-201ENST00000360046 HERC1Q15751 4861 aa12.34□□□□□ -0.43
HOXA4-201ENST00000360046 A8MWP4 228 aa12.33□□□□□ -0.44
HOXA4-201ENST00000360046 K7EQZ3 153 aa12.32□□□□□ -0.44
HOXA4-201ENST00000360046 SMIM20Q8N5G0 67 aa12.32□□□□□ -0.44
HOXA4-201ENST00000360046 NDUFB1O75438 58 aa12.31□□□□□ -0.44
HOXA4-201ENST00000360046 IGHV6-1A0A0B4J1U7 121 aa12.27□□□□□ -0.45
HOXA4-201ENST00000360046 A0A1B0GVX0 72 aa12.26□□□□□ -0.45
HOXA4-201ENST00000360046 PRR15Q8IV56 129 aa12.26□□□□□ -0.45
HOXA4-201ENST00000360046 TRAV7A0A075B6U4 112 aa12.22□□□□□ -0.45
HOXA4-201ENST00000360046 PRR4Q16378 134 aa12.2□□□□□ -0.46
HOXA4-201ENST00000360046 FP248Q71RG6 208 aaPredicted RBP12.2□□□□□ -0.46
HOXA4-201ENST00000360046 C8orf17Q9NRJ1 99 aa12.16□□□□□ -0.46
HOXA4-201ENST00000360046 IGLV7-46A0A075B6I9 117 aa12.15□□□□□ -0.46
HOXA4-201ENST00000360046 NOTCH2NLQ7Z3S9 236 aa12.15□□□□□ -0.46
HOXA4-201ENST00000360046 TMEM258P61165 79 aa12.14□□□□□ -0.47
HOXA4-201ENST00000360046 HCG22E2RYF7 251 aa12.14□□□□□ -0.47
HOXA4-201ENST00000360046 LINC00313P59037 77 aa12.14□□□□□ -0.47
HOXA4-201ENST00000360046 MMP24-AS1A0A0U1RRL7 71 aa12.13□□□□□ -0.47
HOXA4-201ENST00000360046 C8orf87E5RJ46 101 aa12.13□□□□□ -0.47
HOXA4-201ENST00000360046 WFDC13Q8IUB5 93 aa12.13□□□□□ -0.47
HOXA4-201ENST00000360046 C9orf92A6NGG3 77 aa12.11□□□□□ -0.47
HOXA4-201ENST00000360046 CASC2Q6XLA1 102 aa12.09□□□□□ -0.47
HOXA4-201ENST00000360046 hDV103S1A0JD37 113 aa12.08□□□□□ -0.48
HOXA4-201ENST00000360046 RPS28P62857 69 aaKnown RBP12.04□□□□□ -0.48
HOXA4-201ENST00000360046 KLKP1Q107X0 134 aa12.04□□□□□ -0.48
HOXA4-201ENST00000360046 C20orf197Q8N268 126 aa12.04□□□□□ -0.48
HOXA4-201ENST00000360046 TMEM254Q8TBM7 123 aa12.02□□□□□ -0.49
HOXA4-201ENST00000360046 KRTAP13-3Q3SY46 172 aa12.01□□□□□ -0.49
HOXA4-201ENST00000360046 CYSTM1Q9H1C7 97 aa12.01□□□□□ -0.49
HOXA4-201ENST00000360046 KRTAP16-1A8MUX0 517 aa12□□□□□ -0.49
HOXA4-201ENST00000360046 NDUFC1O43677 76 aa12□□□□□ -0.49
HOXA4-201ENST00000360046 MRPL34Q9BQ48 92 aaKnown RBP12□□□□□ -0.49
HOXA4-201ENST00000360046 TPRXLQ17RH7 258 aa11.96□□□□□ -0.49
HOXA4-201ENST00000360046 NDUFS5O43920 106 aa11.94□□□□□ -0.5
HOXA4-201ENST00000360046 OCR1Q9BZK8 76 aa11.94□□□□□ -0.5
HOXA4-201ENST00000360046 HMCN2Q8NDA2 5059 aa11.93□□□□□ -0.5
HOXA4-201ENST00000360046 H7BZZ5 65 aa11.9□□□□□ -0.5
HOXA4-201ENST00000360046 Q8N9P0 234 aaPredicted RBP11.89□□□□□ -0.51
HOXA4-201ENST00000360046 LPAP08519 4548 aa11.88□□□□□ -0.51
HOXA4-201ENST00000360046 XP32Q5T750 250 aa11.88□□□□□ -0.51
HOXA4-201ENST00000360046 FAM236DA0A1B0GTK5 79 aa11.86□□□□□ -0.51
HOXA4-201ENST00000360046 FAM236CP0DP71 79 aa11.86□□□□□ -0.51
HOXA4-201ENST00000360046 ATP5EP56381 51 aaPredicted RBP11.86□□□□□ -0.51
HOXA4-201ENST00000360046 C20orf166-AS1Q96NR2 134 aa11.86□□□□□ -0.51
HOXA4-201ENST00000360046 A8MUU9 505 aa11.84□□□□□ -0.51
HOXA4-201ENST00000360046 SNURFQ9Y675 71 aa11.84□□□□□ -0.51
HOXA4-201ENST00000360046 A0A0U1RQV1 116 aa11.81□□□□□ -0.52
HOXA4-201ENST00000360046 TP53AIP1Q9HCN2 124 aa11.81□□□□□ -0.52
HOXA4-201ENST00000360046 Q75L30 129 aa11.8□□□□□ -0.52
HOXA4-201ENST00000360046 C5orf47Q569G3 176 aa11.77□□□□□ -0.52
HOXA4-201ENST00000360046 LRP2P98164 4655 aa11.77□□□□□ -0.52
HOXA4-201ENST00000360046 SERP1Q9Y6X1 66 aa11.77□□□□□ -0.53
HOXA4-201ENST00000360046 RPL37P61927 97 aaKnown RBP11.76□□□□□ -0.53
HOXA4-201ENST00000360046 ZCCHC13Q8WW36 166 aaKnown RBP11.71□□□□□ -0.54
HOXA4-201ENST00000360046 Q5W150 140 aa11.7□□□□□ -0.54
HOXA4-201ENST00000360046 ATP11AUNQ6ZP68 121 aa11.7□□□□□ -0.54
HOXA4-201ENST00000360046 TRAV22A0A0B4J277 110 aa11.69□□□□□ -0.54
HOXA4-201ENST00000360046 UBR4Q5T4S7 5183 aa11.67□□□□□ -0.54
HOXA4-201ENST00000360046 H0Y9P7 68 aa11.66□□□□□ -0.54
HOXA4-201ENST00000360046 MP68P56378 58 aa11.63□□□□□ -0.55
HOXA4-201ENST00000360046 H3BPC8 53 aa11.63□□□□□ -0.55
HOXA4-201ENST00000360046 PCOTHQ58A44 107 aa11.61□□□□□ -0.55
HOXA4-201ENST00000360046 SEC61BP60468 96 aaKnown RBP11.57□□□□□ -0.56
HOXA4-201ENST00000360046 LINC00208Q96KT6 92 aa11.56□□□□□ -0.56
HOXA4-201ENST00000360046 SMIM26A0A096LP01 95 aa11.55□□□□□ -0.56
HOXA4-201ENST00000360046 C1orf64Q8NEQ6 169 aa11.54□□□□□ -0.56
HOXA4-201ENST00000360046 IGKV2D-30A0A075B6S6 120 aa11.52□□□□□ -0.56
HOXA4-201ENST00000360046 IGKV2-30P06310 120 aa11.52□□□□□ -0.56
HOXA4-201ENST00000360046 LOC101927531A0A1B0GV80 90 aa11.49□□□□□ -0.57
HOXA4-201ENST00000360046 MUC17Q685J3 4493 aa11.49□□□□□ -0.57
HOXA4-201ENST00000360046 SVIPQ8NHG7 77 aa11.47□□□□□ -0.57
HOXA4-201ENST00000360046 C7orf65Q6ZTY9 151 aa11.46□□□□□ -0.57
HOXA4-201ENST00000360046 CYP4F30PQ9H0H9 118 aa11.46□□□□□ -0.58
HOXA4-201ENST00000360046 SPINK7P58062 85 aa11.45□□□□□ -0.58
HOXA4-201ENST00000360046 SPANXA2-OT1Q8N9U9 137 aa11.42□□□□□ -0.58
HOXA4-201ENST00000360046 RNF213Q63HN8 5207 aa11.39□□□□□ -0.59
HOXA4-201ENST00000360046 C4orf26Q17RF5 130 aa11.35□□□□□ -0.59
HOXA4-201ENST00000360046 KRTAP4-1Q9BYQ7 146 aa11.32□□□□□ -0.6
HOXA4-201ENST00000360046 HRES1P13985 223 aa11.26□□□□□ -0.61
HOXA4-201ENST00000360046 MUC2Q02817 5179 aa11.23□□□□□ -0.61
HOXA4-201ENST00000360046 Q1T7F1 81 aa11.18□□□□□ -0.62
HOXA4-201ENST00000360046 V9GYY9 64 aa11.17□□□□□ -0.62
HOXA4-201ENST00000360046 MPLKIPQ8TAP9 179 aa11.15□□□□□ -0.63
HOXA4-201ENST00000360046 RBM12B-AS1Q9P1G2 102 aa11.13□□□□□ -0.63
HOXA4-201ENST00000360046 COX6B2Q6YFQ2 88 aa11.09□□□□□ -0.63
HOXA4-201ENST00000360046 COA5Q86WW8 74 aa11.02□□□□□ -0.65
HOXA4-201ENST00000360046 KRTAP3-1Q9BYR8 98 aa11.02□□□□□ -0.65
HOXA4-201ENST00000360046 DMAC1Q96GE9 116 aa11.01□□□□□ -0.65
HOXA4-201ENST00000360046 PRO0628Q9UI54 55 aa11□□□□□ -0.65
HOXA4-201ENST00000360046 A8MUN3 132 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms