RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 CFAP47Q6ZTR5 3102 aa9.84□□□□□ -0.83
SHANK1-202ENST00000359082 MYO15AQ9UKN7 3530 aa9.83□□□□□ -0.84
SHANK1-202ENST00000359082 BOD1L1Q8NFC6 3051 aa9.81□□□□□ -0.84
SHANK1-202ENST00000359082 NBEAL2Q6ZNJ1 2754 aa9.81□□□□□ -0.84
SHANK1-202ENST00000359082 REV3LO60673 3130 aa9.81□□□□□ -0.84
SHANK1-202ENST00000359082 XP32Q5T750 250 aa9.8□□□□□ -0.84
SHANK1-202ENST00000359082 ITPR2Q14571 2701 aa9.79□□□□□ -0.84
SHANK1-202ENST00000359082 KALRNO60229 2985 aa9.76□□□□□ -0.85
SHANK1-202ENST00000359082 FRYLO94915 3013 aa9.76□□□□□ -0.85
SHANK1-202ENST00000359082 PP632Q6XCG6 107 aa9.75□□□□□ -0.85
SHANK1-202ENST00000359082 MAP1AP78559 2803 aaPredicted RBP9.74□□□□□ -0.85
SHANK1-202ENST00000359082 LRBAP50851 2863 aa9.74□□□□□ -0.85
SHANK1-202ENST00000359082 H0YAA0 97 aa9.68□□□□□ -0.86
SHANK1-202ENST00000359082 NSD1Q96L73 2696 aaPredicted RBP9.68□□□□□ -0.86
SHANK1-202ENST00000359082 KRTAP1-4P0C5Y4 121 aa9.67□□□□□ -0.86
SHANK1-202ENST00000359082 ATMQ13315 3056 aa9.62□□□□□ -0.87
SHANK1-202ENST00000359082 P0C880 135 aa9.62□□□□□ -0.87
SHANK1-202ENST00000359082 KRTAP10-10P60014 251 aa9.62□□□□□ -0.87
SHANK1-202ENST00000359082 DMXL2Q8TDJ6 3036 aa9.59□□□□□ -0.87
SHANK1-202ENST00000359082 UBR5O95071 2799 aaPredicted RBP9.58□□□□□ -0.88
SHANK1-202ENST00000359082 ADGRG4Q8IZF6 3080 aa9.57□□□□□ -0.88
SHANK1-202ENST00000359082 TNRC18O15417 2968 aaPredicted RBP9.55□□□□□ -0.88
SHANK1-202ENST00000359082 COL12A1Q99715 3063 aa9.55□□□□□ -0.88
SHANK1-202ENST00000359082 CRYBG3Q68DQ2 2970 aa9.54□□□□□ -0.88
SHANK1-202ENST00000359082 TPRXLQ17RH7 258 aa9.5□□□□□ -0.89
SHANK1-202ENST00000359082 WDFY3Q8IZQ1 3526 aa9.5□□□□□ -0.89
SHANK1-202ENST00000359082 ASPMQ8IZT6 3477 aa9.48□□□□□ -0.89
SHANK1-202ENST00000359082 TACC2O95359 2948 aa9.48□□□□□ -0.89
SHANK1-202ENST00000359082 PRO2289Q9P1D8 64 aa9.48□□□□□ -0.89
SHANK1-202ENST00000359082 ITPR1Q14643 2758 aa9.46□□□□□ -0.89
SHANK1-202ENST00000359082 NBEAQ8NFP9 2946 aa9.45□□□□□ -0.9
SHANK1-202ENST00000359082 DMXL1Q9Y485 3027 aa9.42□□□□□ -0.9
SHANK1-202ENST00000359082 HIVEP1P15822 2718 aa9.39□□□□□ -0.91
SHANK1-202ENST00000359082 LOC400499M0QZD8 3231 aa9.39□□□□□ -0.91
SHANK1-202ENST00000359082 UTP20O75691 2785 aaKnown RBP9.38□□□□□ -0.91
SHANK1-202ENST00000359082 KRTAP13-3Q3SY46 172 aa9.36□□□□□ -0.91
SHANK1-202ENST00000359082 APCP25054 2843 aa9.36□□□□□ -0.91
SHANK1-202ENST00000359082 TENM4Q6N022 2769 aa9.32□□□□□ -0.92
SHANK1-202ENST00000359082 ASH1LQ9NR48 2969 aaKnown RBP9.31□□□□□ -0.92
SHANK1-202ENST00000359082 ZZEF1O43149 2961 aa9.29□□□□□ -0.92
SHANK1-202ENST00000359082 FLNCQ14315 2725 aa9.25□□□□□ -0.93
SHANK1-202ENST00000359082 ZFHX4Q86UP3 3567 aa9.23□□□□□ -0.93
SHANK1-202ENST00000359082 DCHS1Q96JQ0 3298 aa9.22□□□□□ -0.93
SHANK1-202ENST00000359082 RELNP78509 3460 aa9.19□□□□□ -0.94
SHANK1-202ENST00000359082 KRTAP12-2P59991 146 aa9.19□□□□□ -0.94
SHANK1-202ENST00000359082 LAMA5O15230 3695 aa9.11□□□□□ -0.95
SHANK1-202ENST00000359082 DMDP11532 3685 aa9.08□□□□□ -0.96
SHANK1-202ENST00000359082 NBPF19A0A087WUL8 3843 aa9.07□□□□□ -0.96
SHANK1-202ENST00000359082 NIPBLQ6KC79 2804 aaeCLIP9.06□□□□□ -0.96
SHANK1-202ENST00000359082 CSMD1Q96PZ7 3565 aa9.04□□□□□ -0.96
SHANK1-202ENST00000359082 CELSR2Q9HCU4 2923 aa9.02□□□□□ -0.96
SHANK1-202ENST00000359082 KRTAP13-4Q3LI77 160 aa8.98□□□□□ -0.97
SHANK1-202ENST00000359082 HRNRQ86YZ3 2850 aaPredicted RBP8.98□□□□□ -0.97
SHANK1-202ENST00000359082 DCHS2Q6V1P9 2916 aa8.91□□□□□ -0.98
SHANK1-202ENST00000359082 KRTAP12-1P59990 96 aa8.89□□□□□ -0.99
SHANK1-202ENST00000359082 ZANQ9Y493 2812 aa8.87□□□□□ -0.99
SHANK1-202ENST00000359082 SMG1Q96Q15 3661 aaKnown RBP8.85□□□□□ -0.99
SHANK1-202ENST00000359082 FBN2P35556 2912 aa8.84□□□□□ -0.99
SHANK1-202ENST00000359082 KRTAP15-1Q3LI76 137 aa8.82□□□□□ -1
SHANK1-202ENST00000359082 TGP01266 2768 aa8.77□□□□□ -1.01
SHANK1-202ENST00000359082 CELSR1Q9NYQ6 3014 aa8.76□□□□□ -1.01
SHANK1-202ENST00000359082 TENM2Q9NT68 2774 aa8.73□□□□□ -1.01
SHANK1-202ENST00000359082 KRTAP3-1Q9BYR8 98 aa8.72□□□□□ -1.01
SHANK1-202ENST00000359082 SVEP1Q4LDE5 3571 aa8.7□□□□□ -1.02
SHANK1-202ENST00000359082 TENM1Q9UKZ4 2725 aa8.69□□□□□ -1.02
SHANK1-202ENST00000359082 NF1P21359 2839 aa8.66□□□□□ -1.02
SHANK1-202ENST00000359082 MUC3AQ02505 3323 aa8.65□□□□□ -1.02
SHANK1-202ENST00000359082 SPENQ96T58 3664 aaKnown RBP8.62□□□□□ -1.03
SHANK1-202ENST00000359082 TENM3Q9P273 2699 aa8.56□□□□□ -1.04
SHANK1-202ENST00000359082 CRCT1Q9UGL9 99 aa8.49□□□□□ -1.05
SHANK1-202ENST00000359082 ZFHX3Q15911 3703 aa8.49□□□□□ -1.05
SHANK1-202ENST00000359082 CSMD2Q7Z408 3487 aa8.48□□□□□ -1.05
SHANK1-202ENST00000359082 CUBNO60494 3623 aa8.47□□□□□ -1.05
SHANK1-202ENST00000359082 KRTAP10-6P60371 365 aaPredicted RBP8.47□□□□□ -1.05
SHANK1-202ENST00000359082 MXRA5Q9NR99 2828 aa8.44□□□□□ -1.06
SHANK1-202ENST00000359082 INE1O15225 51 aa8.39□□□□□ -1.07
SHANK1-202ENST00000359082 PKD1L1Q8TDX9 2849 aa8.39□□□□□ -1.07
SHANK1-202ENST00000359082 BSNQ9UPA5 3926 aa8.39□□□□□ -1.07
SHANK1-202ENST00000359082 ANK3Q12955 4377 aaKnown RBP8.39□□□□□ -1.07
SHANK1-202ENST00000359082 PDZD2O15018 2839 aa8.38□□□□□ -1.07
SHANK1-202ENST00000359082 KRTAP10-12P60413 245 aa8.29□□□□□ -1.08
SHANK1-202ENST00000359082 VWFP04275 2813 aa8.23□□□□□ -1.09
SHANK1-202ENST00000359082 MT1HL1P0DM35 61 aa8.2□□□□□ -1.1
SHANK1-202ENST00000359082 TRRAPQ9Y4A5 3859 aa8.17□□□□□ -1.1
SHANK1-202ENST00000359082 VPS13CQ709C8 3753 aa8.13□□□□□ -1.11
SHANK1-202ENST00000359082 KRTAP3-3Q9BYR6 98 aa8.12□□□□□ -1.11
SHANK1-202ENST00000359082 KRTAP3-2Q9BYR7 98 aa8.12□□□□□ -1.11
SHANK1-202ENST00000359082 FBN1P35555 2871 aaKnown RBP8.08□□□□□ -1.12
SHANK1-202ENST00000359082 OTOGQ6ZRI0 2925 aa8.06□□□□□ -1.12
SHANK1-202ENST00000359082 KRTAP12-3P60328 96 aa8.02□□□□□ -1.13
SHANK1-202ENST00000359082 LCE3AQ5TA76 89 aa8□□□□□ -1.13
SHANK1-202ENST00000359082 KRTAP4-5Q9BYR2 181 aa7.99□□□□□ -1.13
SHANK1-202ENST00000359082 HUWE1Q7Z6Z7 4374 aaKnown RBP7.97□□□□□ -1.13
SHANK1-202ENST00000359082 KRTAP10-4P60372 401 aaPredicted RBP7.94□□□□□ -1.14
SHANK1-202ENST00000359082 ALMS1Q8TCU4 4167 aa7.88□□□□□ -1.15
SHANK1-202ENST00000359082 KRTAP23-1A1A580 65 aa7.81□□□□□ -1.16
SHANK1-202ENST00000359082 CSMD3Q7Z407 3707 aa7.8□□□□□ -1.16
SHANK1-202ENST00000359082 AKAP9Q99996 3911 aa7.8□□□□□ -1.16
SHANK1-202ENST00000359082 LORP23490 312 aaPredicted RBP7.79□□□□□ -1.16
SHANK1-202ENST00000359082 KRTAP10-5P60370 271 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms