RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 A0A087X002 238 aa10.1□□□□□ -0.79
COL27A1-201ENST00000356083 SPRR1BP22528 89 aa10.08□□□□□ -0.8
COL27A1-201ENST00000356083 C10orf95Q9H7T3 257 aa10.08□□□□□ -0.8
COL27A1-201ENST00000356083 Q5XG85 94 aa10.07□□□□□ -0.8
COL27A1-201ENST00000356083 SPRR1AP35321 89 aa10.06□□□□□ -0.8
COL27A1-201ENST00000356083 A8MU10 97 aa10.05□□□□□ -0.8
COL27A1-201ENST00000356083 ITPR1Q14643 2758 aa10.05□□□□□ -0.8
COL27A1-201ENST00000356083 DMXL1Q9Y485 3027 aa10.02□□□□□ -0.8
COL27A1-201ENST00000356083 TACC2O95359 2948 aa10□□□□□ -0.81
COL27A1-201ENST00000356083 LOC400499M0QZD8 3231 aa9.99□□□□□ -0.81
COL27A1-201ENST00000356083 HIVEP1P15822 2718 aa9.97□□□□□ -0.81
COL27A1-201ENST00000356083 FLNCQ14315 2725 aa9.97□□□□□ -0.81
COL27A1-201ENST00000356083 CHD9Q3L8U1 2897 aa9.97□□□□□ -0.81
COL27A1-201ENST00000356083 ZFHX4Q86UP3 3567 aa9.96□□□□□ -0.82
COL27A1-201ENST00000356083 NDUFAF8A1L188 74 aa9.95□□□□□ -0.82
COL27A1-201ENST00000356083 TNP1P09430 55 aa9.94□□□□□ -0.82
COL27A1-201ENST00000356083 CELSR1Q9NYQ6 3014 aa9.92□□□□□ -0.82
COL27A1-201ENST00000356083 CELSR2Q9HCU4 2923 aa9.91□□□□□ -0.82
COL27A1-201ENST00000356083 KRTAP10-8P60410 259 aa9.91□□□□□ -0.82
COL27A1-201ENST00000356083 TENM1Q9UKZ4 2725 aa9.9□□□□□ -0.82
COL27A1-201ENST00000356083 NOTCH2NLQ7Z3S9 236 aa9.89□□□□□ -0.83
COL27A1-201ENST00000356083 DCHS1Q96JQ0 3298 aa9.85□□□□□ -0.83
COL27A1-201ENST00000356083 A0A1B0GVY2 172 aa9.85□□□□□ -0.83
COL27A1-201ENST00000356083 KRTAP25-1Q3LHN0 102 aa9.81□□□□□ -0.84
COL27A1-201ENST00000356083 NF1P21359 2839 aa9.79□□□□□ -0.84
COL27A1-201ENST00000356083 LAMA5O15230 3695 aa9.73□□□□□ -0.85
COL27A1-201ENST00000356083 NBEAQ8NFP9 2946 aa9.73□□□□□ -0.85
COL27A1-201ENST00000356083 NBPF19A0A087WUL8 3843 aa9.72□□□□□ -0.85
COL27A1-201ENST00000356083 P0C880 135 aa9.67□□□□□ -0.86
COL27A1-201ENST00000356083 NIPBLQ6KC79 2804 aaeCLIP9.64□□□□□ -0.87
COL27A1-201ENST00000356083 DCHS2Q6V1P9 2916 aa9.64□□□□□ -0.87
COL27A1-201ENST00000356083 KRTAP11-1Q8IUC1 163 aa9.62□□□□□ -0.87
COL27A1-201ENST00000356083 TENM3Q9P273 2699 aa9.57□□□□□ -0.88
COL27A1-201ENST00000356083 ASB16-AS1Q495Z4 193 aa9.56□□□□□ -0.88
COL27A1-201ENST00000356083 KRTAP29-1A8MX34 341 aaPredicted RBP9.56□□□□□ -0.88
COL27A1-201ENST00000356083 KRTAP4-16G5E9R7 235 aaPredicted RBP9.56□□□□□ -0.88
COL27A1-201ENST00000356083 PDZD2O15018 2839 aa9.55□□□□□ -0.88
COL27A1-201ENST00000356083 KRTAP10-10P60014 251 aa9.54□□□□□ -0.88
COL27A1-201ENST00000356083 CSMD1Q96PZ7 3565 aa9.53□□□□□ -0.88
COL27A1-201ENST00000356083 PKD1L1Q8TDX9 2849 aa9.49□□□□□ -0.89
COL27A1-201ENST00000356083 PRO2289Q9P1D8 64 aa9.49□□□□□ -0.89
COL27A1-201ENST00000356083 RPS29P62273 56 aaKnown RBP9.48□□□□□ -0.89
COL27A1-201ENST00000356083 KRTAP13-2Q52LG2 175 aa9.46□□□□□ -0.89
COL27A1-201ENST00000356083 RELNP78509 3460 aa9.46□□□□□ -0.89
COL27A1-201ENST00000356083 VWFP04275 2813 aa9.45□□□□□ -0.9
COL27A1-201ENST00000356083 Q6ZRN7 208 aaPredicted RBP9.4□□□□□ -0.9
COL27A1-201ENST00000356083 TENM4Q6N022 2769 aa9.4□□□□□ -0.91
COL27A1-201ENST00000356083 A6NN06 94 aa9.38□□□□□ -0.91
COL27A1-201ENST00000356083 KRTAP21-3Q3LHN1 58 aa9.36□□□□□ -0.91
COL27A1-201ENST00000356083 FBN2P35556 2912 aa9.3□□□□□ -0.92
COL27A1-201ENST00000356083 ZANQ9Y493 2812 aa9.29□□□□□ -0.92
COL27A1-201ENST00000356083 SPENQ96T58 3664 aaKnown RBP9.27□□□□□ -0.93
COL27A1-201ENST00000356083 PP632Q6XCG6 107 aa9.25□□□□□ -0.93
COL27A1-201ENST00000356083 TGP01266 2768 aa9.25□□□□□ -0.93
COL27A1-201ENST00000356083 ZFHX3Q15911 3703 aa9.23□□□□□ -0.93
COL27A1-201ENST00000356083 CUBNO60494 3623 aa9.21□□□□□ -0.94
COL27A1-201ENST00000356083 DMDP11532 3685 aa9.21□□□□□ -0.94
COL27A1-201ENST00000356083 KRTAP7-1Q8IUC3 87 aa9.19□□□□□ -0.94
COL27A1-201ENST00000356083 SMG1Q96Q15 3661 aaKnown RBP9.19□□□□□ -0.94
COL27A1-201ENST00000356083 XP32Q5T750 250 aa9.17□□□□□ -0.94
COL27A1-201ENST00000356083 SVEP1Q4LDE5 3571 aa9.06□□□□□ -0.96
COL27A1-201ENST00000356083 KRTAP13-1Q8IUC0 172 aa9.05□□□□□ -0.96
COL27A1-201ENST00000356083 H0YAA0 97 aa9.01□□□□□ -0.97
COL27A1-201ENST00000356083 SRRM2Q9UQ35 2752 aaKnown RBP8.98□□□□□ -0.97
COL27A1-201ENST00000356083 TENM2Q9NT68 2774 aa8.97□□□□□ -0.97
COL27A1-201ENST00000356083 COL7A1Q02388 2944 aa8.96□□□□□ -0.97
COL27A1-201ENST00000356083 MEGF8Q7Z7M0 2845 aa8.93□□□□□ -0.98
COL27A1-201ENST00000356083 TPRXLQ17RH7 258 aa8.91□□□□□ -0.98
COL27A1-201ENST00000356083 MXRA5Q9NR99 2828 aa8.86□□□□□ -0.99
COL27A1-201ENST00000356083 MUC3AQ02505 3323 aa8.81□□□□□ -1
COL27A1-201ENST00000356083 KRTAP12-2P59991 146 aa8.78□□□□□ -1
COL27A1-201ENST00000356083 KRTAP1-4P0C5Y4 121 aa8.75□□□□□ -1.01
COL27A1-201ENST00000356083 CSMD2Q7Z408 3487 aa8.71□□□□□ -1.02
COL27A1-201ENST00000356083 CRCT1Q9UGL9 99 aa8.7□□□□□ -1.02
COL27A1-201ENST00000356083 KRTAP13-3Q3SY46 172 aa8.67□□□□□ -1.02
COL27A1-201ENST00000356083 KRTAP15-1Q3LI76 137 aa8.61□□□□□ -1.03
COL27A1-201ENST00000356083 HRNRQ86YZ3 2850 aaPredicted RBP8.58□□□□□ -1.04
COL27A1-201ENST00000356083 CSMD3Q7Z407 3707 aa8.47□□□□□ -1.05
COL27A1-201ENST00000356083 VPS13CQ709C8 3753 aa8.46□□□□□ -1.06
COL27A1-201ENST00000356083 KRTAP13-4Q3LI77 160 aa8.41□□□□□ -1.06
COL27A1-201ENST00000356083 FBN1P35555 2871 aaKnown RBP8.37□□□□□ -1.07
COL27A1-201ENST00000356083 FBN3Q75N90 2809 aa8.37□□□□□ -1.07
COL27A1-201ENST00000356083 OTOGQ6ZRI0 2925 aa8.34□□□□□ -1.08
COL27A1-201ENST00000356083 TRRAPQ9Y4A5 3859 aa8.32□□□□□ -1.08
COL27A1-201ENST00000356083 KRTAP12-1P59990 96 aa8.26□□□□□ -1.09
COL27A1-201ENST00000356083 BSNQ9UPA5 3926 aa8.23□□□□□ -1.09
COL27A1-201ENST00000356083 KRTAP10-12P60413 245 aa7.96□□□□□ -1.13
COL27A1-201ENST00000356083 ANK3Q12955 4377 aaKnown RBP7.89□□□□□ -1.15
COL27A1-201ENST00000356083 AKAP9Q99996 3911 aa7.87□□□□□ -1.15
COL27A1-201ENST00000356083 KRTAP3-1Q9BYR8 98 aa7.79□□□□□ -1.16
COL27A1-201ENST00000356083 INE1O15225 51 aa7.79□□□□□ -1.16
COL27A1-201ENST00000356083 KRTAP10-5P60370 271 aa7.79□□□□□ -1.16
COL27A1-201ENST00000356083 KRTAP4-5Q9BYR2 181 aa7.78□□□□□ -1.16
COL27A1-201ENST00000356083 LORP23490 312 aaPredicted RBP7.75□□□□□ -1.17
COL27A1-201ENST00000356083 KRTAP10-6P60371 365 aaPredicted RBP7.74□□□□□ -1.17
COL27A1-201ENST00000356083 ZNF469Q96JG9 3925 aaPredicted RBP7.72□□□□□ -1.17
COL27A1-201ENST00000356083 HUWE1Q7Z6Z7 4374 aaKnown RBP7.67□□□□□ -1.18
COL27A1-201ENST00000356083 KRTAP12-3P60328 96 aa7.64□□□□□ -1.19
COL27A1-201ENST00000356083 KRTAP8-1Q8IUC2 63 aa7.55□□□□□ -1.2
COL27A1-201ENST00000356083 LCE3AQ5TA76 89 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms