RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 MYO15AQ9UKN7 3530 aa6.74□□□□□ -1.33
SYNCRIP-201ENST00000355238 NSD1Q96L73 2696 aaPredicted RBP6.73□□□□□ -1.33
SYNCRIP-201ENST00000355238 UBR5O95071 2799 aaPredicted RBP6.7□□□□□ -1.34
SYNCRIP-201ENST00000355238 USP34Q70CQ2 3546 aa6.68□□□□□ -1.34
SYNCRIP-201ENST00000355238 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
SYNCRIP-201ENST00000355238 APCP25054 2843 aa6.68□□□□□ -1.34
SYNCRIP-201ENST00000355238 CELSR3Q9NYQ7 3312 aa6.67□□□□□ -1.34
SYNCRIP-201ENST00000355238 KRTAP10-8P60410 259 aa6.67□□□□□ -1.34
SYNCRIP-201ENST00000355238 KALRNO60229 2985 aa6.67□□□□□ -1.34
SYNCRIP-201ENST00000355238 FREM2Q5SZK8 3169 aa6.66□□□□□ -1.34
SYNCRIP-201ENST00000355238 MAP1AP78559 2803 aaPredicted RBP6.66□□□□□ -1.34
SYNCRIP-201ENST00000355238 DMXL1Q9Y485 3027 aa6.63□□□□□ -1.35
SYNCRIP-201ENST00000355238 XP32Q5T750 250 aa6.62□□□□□ -1.35
SYNCRIP-201ENST00000355238 DMDP11532 3685 aa6.61□□□□□ -1.35
SYNCRIP-201ENST00000355238 KRTAP13-3Q3SY46 172 aa6.61□□□□□ -1.35
SYNCRIP-201ENST00000355238 KMT2BQ9UMN6 2715 aaPredicted RBP6.59□□□□□ -1.35
SYNCRIP-201ENST00000355238 DSPP15924 2871 aaKnown RBP6.58□□□□□ -1.36
SYNCRIP-201ENST00000355238 ITPR2Q14571 2701 aa6.57□□□□□ -1.36
SYNCRIP-201ENST00000355238 DMXL2Q8TDJ6 3036 aa6.54□□□□□ -1.36
SYNCRIP-201ENST00000355238 IGSF10Q6WRI0 2623 aa6.53□□□□□ -1.36
SYNCRIP-201ENST00000355238 NBEAQ8NFP9 2946 aa6.53□□□□□ -1.36
SYNCRIP-201ENST00000355238 BOD1L1Q8NFC6 3051 aa6.52□□□□□ -1.37
SYNCRIP-201ENST00000355238 ASH1LQ9NR48 2969 aaKnown RBP6.51□□□□□ -1.37
SYNCRIP-201ENST00000355238 LOC400499M0QZD8 3231 aa6.5□□□□□ -1.37
SYNCRIP-201ENST00000355238 KRTAP21-3Q3LHN1 58 aa6.48□□□□□ -1.37
SYNCRIP-201ENST00000355238 UTP20O75691 2785 aaKnown RBP6.48□□□□□ -1.37
SYNCRIP-201ENST00000355238 LRBAP50851 2863 aa6.43□□□□□ -1.38
SYNCRIP-201ENST00000355238 HIVEP1P15822 2718 aa6.43□□□□□ -1.38
SYNCRIP-201ENST00000355238 TPRXLQ17RH7 258 aa6.43□□□□□ -1.38
SYNCRIP-201ENST00000355238 WDFY3Q8IZQ1 3526 aa6.42□□□□□ -1.38
SYNCRIP-201ENST00000355238 CFAP47Q6ZTR5 3102 aa6.42□□□□□ -1.38
SYNCRIP-201ENST00000355238 KRTAP12-2P59991 146 aa6.42□□□□□ -1.38
SYNCRIP-201ENST00000355238 DCHS1Q96JQ0 3298 aa6.42□□□□□ -1.38
SYNCRIP-201ENST00000355238 ZZEF1O43149 2961 aa6.41□□□□□ -1.38
SYNCRIP-201ENST00000355238 NIPBLQ6KC79 2804 aaeCLIP6.41□□□□□ -1.38
SYNCRIP-201ENST00000355238 ASPMQ8IZT6 3477 aa6.4□□□□□ -1.38
SYNCRIP-201ENST00000355238 ATMQ13315 3056 aa6.4□□□□□ -1.39
SYNCRIP-201ENST00000355238 ADGRG4Q8IZF6 3080 aa6.38□□□□□ -1.39
SYNCRIP-201ENST00000355238 LAMA5O15230 3695 aa6.37□□□□□ -1.39
SYNCRIP-201ENST00000355238 TACC2O95359 2948 aa6.37□□□□□ -1.39
SYNCRIP-201ENST00000355238 A0A1B0GVY2 172 aa6.36□□□□□ -1.39
SYNCRIP-201ENST00000355238 KRTAP13-4Q3LI77 160 aa6.34□□□□□ -1.39
SYNCRIP-201ENST00000355238 FLNCQ14315 2725 aa6.34□□□□□ -1.4
SYNCRIP-201ENST00000355238 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
SYNCRIP-201ENST00000355238 PRO2289Q9P1D8 64 aa6.3□□□□□ -1.4
SYNCRIP-201ENST00000355238 TGP01266 2768 aa6.28□□□□□ -1.4
SYNCRIP-201ENST00000355238 CELSR2Q9HCU4 2923 aa6.28□□□□□ -1.4
SYNCRIP-201ENST00000355238 COL12A1Q99715 3063 aa6.26□□□□□ -1.41
SYNCRIP-201ENST00000355238 ZFHX4Q86UP3 3567 aa6.26□□□□□ -1.41
SYNCRIP-201ENST00000355238 KRTAP10-10P60014 251 aa6.24□□□□□ -1.41
SYNCRIP-201ENST00000355238 KRTAP3-1Q9BYR8 98 aa6.2□□□□□ -1.42
SYNCRIP-201ENST00000355238 RELNP78509 3460 aa6.19□□□□□ -1.42
SYNCRIP-201ENST00000355238 DCHS2Q6V1P9 2916 aa6.19□□□□□ -1.42
SYNCRIP-201ENST00000355238 KRTAP15-1Q3LI76 137 aa6.15□□□□□ -1.43
SYNCRIP-201ENST00000355238 SMG1Q96Q15 3661 aaKnown RBP6.11□□□□□ -1.43
SYNCRIP-201ENST00000355238 KRTAP10-6P60371 365 aaPredicted RBP6.11□□□□□ -1.43
SYNCRIP-201ENST00000355238 TENM4Q6N022 2769 aa6.11□□□□□ -1.43
SYNCRIP-201ENST00000355238 ZANQ9Y493 2812 aa6.1□□□□□ -1.43
SYNCRIP-201ENST00000355238 INE1O15225 51 aa6.09□□□□□ -1.43
SYNCRIP-201ENST00000355238 HRNRQ86YZ3 2850 aaPredicted RBP6.08□□□□□ -1.44
SYNCRIP-201ENST00000355238 CRYBG3Q68DQ2 2970 aa6.07□□□□□ -1.44
SYNCRIP-201ENST00000355238 NF1P21359 2839 aa6.03□□□□□ -1.44
SYNCRIP-201ENST00000355238 TENM3Q9P273 2699 aa6.02□□□□□ -1.45
SYNCRIP-201ENST00000355238 FBN2P35556 2912 aa6.01□□□□□ -1.45
SYNCRIP-201ENST00000355238 SPENQ96T58 3664 aaKnown RBP5.99□□□□□ -1.45
SYNCRIP-201ENST00000355238 TENM1Q9UKZ4 2725 aa5.97□□□□□ -1.45
SYNCRIP-201ENST00000355238 BSNQ9UPA5 3926 aa5.96□□□□□ -1.46
SYNCRIP-201ENST00000355238 TENM2Q9NT68 2774 aa5.95□□□□□ -1.46
SYNCRIP-201ENST00000355238 CELSR1Q9NYQ6 3014 aa5.94□□□□□ -1.46
SYNCRIP-201ENST00000355238 KRTAP3-2Q9BYR7 98 aa5.87□□□□□ -1.47
SYNCRIP-201ENST00000355238 PDZD2O15018 2839 aa5.84□□□□□ -1.47
SYNCRIP-201ENST00000355238 MXRA5Q9NR99 2828 aa5.83□□□□□ -1.48
SYNCRIP-201ENST00000355238 KRTAP3-3Q9BYR6 98 aa5.8□□□□□ -1.48
SYNCRIP-201ENST00000355238 SVEP1Q4LDE5 3571 aa5.77□□□□□ -1.49
SYNCRIP-201ENST00000355238 CSMD2Q7Z408 3487 aa5.75□□□□□ -1.49
SYNCRIP-201ENST00000355238 CSMD1Q96PZ7 3565 aa5.75□□□□□ -1.49
SYNCRIP-201ENST00000355238 KRTAP23-1A1A580 65 aa5.73□□□□□ -1.49
SYNCRIP-201ENST00000355238 OTOGQ6ZRI0 2925 aa5.72□□□□□ -1.49
SYNCRIP-201ENST00000355238 PKD1L1Q8TDX9 2849 aa5.67□□□□□ -1.5
SYNCRIP-201ENST00000355238 NBPF19A0A087WUL8 3843 aa5.63□□□□□ -1.51
SYNCRIP-201ENST00000355238 KRTAP10-12P60413 245 aa5.62□□□□□ -1.51
SYNCRIP-201ENST00000355238 VPS13CQ709C8 3753 aa5.59□□□□□ -1.51
SYNCRIP-201ENST00000355238 VWFP04275 2813 aa5.56□□□□□ -1.52
SYNCRIP-201ENST00000355238 MEGF8Q7Z7M0 2845 aa5.55□□□□□ -1.52
SYNCRIP-201ENST00000355238 ZFHX3Q15911 3703 aa5.54□□□□□ -1.52
SYNCRIP-201ENST00000355238 KRTAP12-3P60328 96 aa5.54□□□□□ -1.52
SYNCRIP-201ENST00000355238 FBN3Q75N90 2809 aa5.54□□□□□ -1.52
SYNCRIP-201ENST00000355238 ZNF469Q96JG9 3925 aaPredicted RBP5.5□□□□□ -1.53
SYNCRIP-201ENST00000355238 MT1HL1P0DM35 61 aa5.48□□□□□ -1.53
SYNCRIP-201ENST00000355238 CUBNO60494 3623 aa5.47□□□□□ -1.53
SYNCRIP-201ENST00000355238 SRRM2Q9UQ35 2752 aaKnown RBP5.47□□□□□ -1.53
SYNCRIP-201ENST00000355238 LCE3AQ5TA76 89 aa5.46□□□□□ -1.54
SYNCRIP-201ENST00000355238 FBN1P35555 2871 aaKnown RBP5.42□□□□□ -1.54
SYNCRIP-201ENST00000355238 KRTAP10-4P60372 401 aaPredicted RBP5.38□□□□□ -1.55
SYNCRIP-201ENST00000355238 CRCT1Q9UGL9 99 aa5.35□□□□□ -1.55
SYNCRIP-201ENST00000355238 ANK3Q12955 4377 aaKnown RBP5.35□□□□□ -1.55
SYNCRIP-201ENST00000355238 LORP23490 312 aaPredicted RBP5.33□□□□□ -1.56
SYNCRIP-201ENST00000355238 AKAP9Q99996 3911 aa5.33□□□□□ -1.56
SYNCRIP-201ENST00000355238 TRRAPQ9Y4A5 3859 aa5.3□□□□□ -1.56
SYNCRIP-201ENST00000355238 COL7A1Q02388 2944 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms