RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SPAG11AQ6PDA7 123 aa9.6□□□□□ -0.87
HMGA1-202ENST00000347617 CDK2AP2O75956 126 aa9.59□□□□□ -0.87
HMGA1-202ENST00000347617 HRES1P13985 223 aa9.58□□□□□ -0.88
HMGA1-202ENST00000347617 KRTAP11-1Q8IUC1 163 aa9.58□□□□□ -0.88
HMGA1-202ENST00000347617 MRPL34Q9BQ48 92 aaKnown RBP9.58□□□□□ -0.88
HMGA1-202ENST00000347617 LINC00483Q53H64 154 aa9.57□□□□□ -0.88
HMGA1-202ENST00000347617 ZNF706Q9Y5V0 76 aaPredicted RBP9.57□□□□□ -0.88
HMGA1-202ENST00000347617 DNAH6Q9C0G6 4158 aa9.53□□□□□ -0.88
HMGA1-202ENST00000347617 RTL8CO15255 209 aa9.52□□□□□ -0.88
HMGA1-202ENST00000347617 CHTF8P0CG12 524 aa9.52□□□□□ -0.88
HMGA1-202ENST00000347617 SPACA4Q8TDM5 124 aa9.52□□□□□ -0.88
HMGA1-202ENST00000347617 TGP01266 2768 aa9.51□□□□□ -0.89
HMGA1-202ENST00000347617 IGHV6-1A0A0B4J1U7 121 aa9.5□□□□□ -0.89
HMGA1-202ENST00000347617 SPINK7P58062 85 aa9.5□□□□□ -0.89
HMGA1-202ENST00000347617 IGLV9-49A0A0B4J1Y8 123 aa9.48□□□□□ -0.89
HMGA1-202ENST00000347617 KMT2AQ03164 3969 aa9.47□□□□□ -0.89
HMGA1-202ENST00000347617 ALMS1Q8TCU4 4167 aa9.47□□□□□ -0.89
HMGA1-202ENST00000347617 IGLV5-52A0A0A0MRZ9 124 aa9.47□□□□□ -0.89
HMGA1-202ENST00000347617 ACYP2P14621 99 aa9.47□□□□□ -0.89
HMGA1-202ENST00000347617 A0A087X002 238 aa9.46□□□□□ -0.9
HMGA1-202ENST00000347617 PANO1I0J062 215 aa9.46□□□□□ -0.9
HMGA1-202ENST00000347617 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.46□□□□□ -0.9
HMGA1-202ENST00000347617 DNAH2Q9P225 4427 aa9.44□□□□□ -0.9
HMGA1-202ENST00000347617 DNAH17Q9UFH2 4485 aa9.41□□□□□ -0.9
HMGA1-202ENST00000347617 KRTAP13-3Q3SY46 172 aa9.41□□□□□ -0.9
HMGA1-202ENST00000347617 C8orf87E5RJ46 101 aa9.4□□□□□ -0.91
HMGA1-202ENST00000347617 HECTD4Q9Y4D8 3996 aa9.37□□□□□ -0.91
HMGA1-202ENST00000347617 DMAC1Q96GE9 116 aa9.37□□□□□ -0.91
HMGA1-202ENST00000347617 PRR26Q8N8Z3 221 aa9.35□□□□□ -0.91
HMGA1-202ENST00000347617 PLA2G1BP04054 148 aaKnown RBP9.33□□□□□ -0.92
HMGA1-202ENST00000347617 KRTAP10-2P60368 255 aa9.33□□□□□ -0.92
HMGA1-202ENST00000347617 ZNF861PO60384 105 aa9.31□□□□□ -0.92
HMGA1-202ENST00000347617 Q6ZSA8 131 aa9.31□□□□□ -0.92
HMGA1-202ENST00000347617 NOTCH2NLQ7Z3S9 236 aa9.31□□□□□ -0.92
HMGA1-202ENST00000347617 Q5W150 140 aa9.3□□□□□ -0.92
HMGA1-202ENST00000347617 SPATA8Q6RVD6 105 aa9.3□□□□□ -0.92
HMGA1-202ENST00000347617 FAM229AH3BQW9 127 aa9.29□□□□□ -0.92
HMGA1-202ENST00000347617 LINC00313P59037 77 aa9.29□□□□□ -0.92
HMGA1-202ENST00000347617 PSORS1C2Q9UIG4 136 aa9.29□□□□□ -0.92
HMGA1-202ENST00000347617 A0A1B0GU69 56 aa9.29□□□□□ -0.92
HMGA1-202ENST00000347617 FRAS1Q86XX4 4008 aa9.28□□□□□ -0.92
HMGA1-202ENST00000347617 CIRBP-AS1Q8TBR5 109 aa9.24□□□□□ -0.93
HMGA1-202ENST00000347617 DNAH11Q96DT5 4516 aa9.24□□□□□ -0.93
HMGA1-202ENST00000347617 KRTAP10-1P60331 282 aa9.23□□□□□ -0.93
HMGA1-202ENST00000347617 SSBP3-AS1Q7Z2R9 100 aa9.23□□□□□ -0.93
HMGA1-202ENST00000347617 UQCR11O14957 56 aa9.22□□□□□ -0.93
HMGA1-202ENST00000347617 SRRM2Q9UQ35 2752 aaKnown RBP9.21□□□□□ -0.93
HMGA1-202ENST00000347617 IGKV2-30P06310 120 aa9.21□□□□□ -0.94
HMGA1-202ENST00000347617 SPINK6Q6UWN8 80 aa9.21□□□□□ -0.94
HMGA1-202ENST00000347617 HYDINQ4G0P3 5121 aa9.2□□□□□ -0.94
HMGA1-202ENST00000347617 IGLV7-43P04211 117 aa9.2□□□□□ -0.94
HMGA1-202ENST00000347617 FAT2Q9NYQ8 4349 aa9.2□□□□□ -0.94
HMGA1-202ENST00000347617 DNAH8Q96JB1 4490 aa9.2□□□□□ -0.94
HMGA1-202ENST00000347617 DNAH5Q8TE73 4624 aa9.19□□□□□ -0.94
HMGA1-202ENST00000347617 MIR22HGQ0VDD5 57 aa9.18□□□□□ -0.94
HMGA1-202ENST00000347617 PKD1P98161 4303 aa9.18□□□□□ -0.94
HMGA1-202ENST00000347617 SACSQ9NZJ4 4579 aa9.17□□□□□ -0.94
HMGA1-202ENST00000347617 LINC01554Q52M75 96 aa9.15□□□□□ -0.94
HMGA1-202ENST00000347617 ANAPC11Q9NYG5 84 aa9.14□□□□□ -0.95
HMGA1-202ENST00000347617 A0A1B0GVY2 172 aa9.13□□□□□ -0.95
HMGA1-202ENST00000347617 PRAC1Q96KF2 57 aa9.13□□□□□ -0.95
HMGA1-202ENST00000347617 KMT2CQ8NEZ4 4911 aaKnown RBP9.12□□□□□ -0.95
HMGA1-202ENST00000347617 RETNLBQ9BQ08 111 aa9.09□□□□□ -0.95
HMGA1-202ENST00000347617 ADM2Q7Z4H4 148 aa9.04□□□□□ -0.96
HMGA1-202ENST00000347617 IGKV2D-30A0A075B6S6 120 aa9.03□□□□□ -0.96
HMGA1-202ENST00000347617 RYR3Q15413 4870 aa9.03□□□□□ -0.96
HMGA1-202ENST00000347617 KRTAP16-1A8MUX0 517 aa9.01□□□□□ -0.97
HMGA1-202ENST00000347617 LRP1BQ9NZR2 4599 aa8.98□□□□□ -0.97
HMGA1-202ENST00000347617 RYR2Q92736 4967 aa8.98□□□□□ -0.97
HMGA1-202ENST00000347617 C4orf48Q5BLP8 95 aa8.98□□□□□ -0.97
HMGA1-202ENST00000347617 KRTAP1-4P0C5Y4 121 aa8.91□□□□□ -0.98
HMGA1-202ENST00000347617 DYNC1H1Q14204 4646 aaKnown RBP8.91□□□□□ -0.98
HMGA1-202ENST00000347617 CSAG1Q6PB30 78 aa8.9□□□□□ -0.98
HMGA1-202ENST00000347617 PKHD1P08F94 4074 aa8.9□□□□□ -0.99
HMGA1-202ENST00000347617 KRTAP13-2Q52LG2 175 aa8.88□□□□□ -0.99
HMGA1-202ENST00000347617 VPS13BQ7Z7G8 4022 aa8.86□□□□□ -0.99
HMGA1-202ENST00000347617 KRTAP10-4P60372 401 aaPredicted RBP8.84□□□□□ -1
HMGA1-202ENST00000347617 SMR3BP02814 79 aaPredicted RBP8.82□□□□□ -1
HMGA1-202ENST00000347617 APOBP04114 4563 aaKnown RBP8.79□□□□□ -1
HMGA1-202ENST00000347617 TYMSOSQ8TAI1 123 aa8.78□□□□□ -1
HMGA1-202ENST00000347617 A8MUU9 505 aa8.77□□□□□ -1.01
HMGA1-202ENST00000347617 BIRC6Q9NR09 4857 aa8.77□□□□□ -1.01
HMGA1-202ENST00000347617 SPINK1P00995 79 aa8.76□□□□□ -1.01
HMGA1-202ENST00000347617 RPS29P62273 56 aaKnown RBP8.76□□□□□ -1.01
HMGA1-202ENST00000347617 H3BS24 57 aa8.72□□□□□ -1.01
HMGA1-202ENST00000347617 KRTAP25-1Q3LHN0 102 aa8.72□□□□□ -1.01
HMGA1-202ENST00000347617 H0YAA0 97 aa8.7□□□□□ -1.02
HMGA1-202ENST00000347617 Q8N1X5 172 aa8.7□□□□□ -1.02
HMGA1-202ENST00000347617 EPPK1P58107 5090 aaKnown RBP8.7□□□□□ -1.02
HMGA1-202ENST00000347617 A0A1B0GU33 70 aa8.68□□□□□ -1.02
HMGA1-202ENST00000347617 LINC00304Q8N9R0 145 aa8.68□□□□□ -1.02
HMGA1-202ENST00000347617 H1FX-AS1Q4G0G2 97 aa8.66□□□□□ -1.02
HMGA1-202ENST00000347617 FAT1Q14517 4588 aa8.65□□□□□ -1.02
HMGA1-202ENST00000347617 K7ERS5 55 aa8.63□□□□□ -1.03
HMGA1-202ENST00000347617 Q5VSD8 79 aa8.61□□□□□ -1.03
HMGA1-202ENST00000347617 PKHD1L1Q86WI1 4243 aa8.58□□□□□ -1.04
HMGA1-202ENST00000347617 C20orf166-AS1Q96NR2 134 aa8.56□□□□□ -1.04
HMGA1-202ENST00000347617 ROMO1P60602 79 aa8.56□□□□□ -1.04
HMGA1-202ENST00000347617 KRTAP10-8P60410 259 aa8.54□□□□□ -1.04
HMGA1-202ENST00000347617 HSPG2P98160 4391 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms