RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 NSD1Q96L73 2696 aaPredicted RBP9.66□□□□□ -0.86
SMC4-201ENST00000344722 P0C880 135 aa9.64□□□□□ -0.87
SMC4-201ENST00000344722 PP632Q6XCG6 107 aa9.64□□□□□ -0.87
SMC4-201ENST00000344722 KRTAP13-3Q3SY46 172 aa9.63□□□□□ -0.87
SMC4-201ENST00000344722 ASH1LQ9NR48 2969 aaKnown RBP9.6□□□□□ -0.87
SMC4-201ENST00000344722 KRTAP1-4P0C5Y4 121 aa9.6□□□□□ -0.87
SMC4-201ENST00000344722 TNP1P09430 55 aa9.6□□□□□ -0.87
SMC4-201ENST00000344722 ATMQ13315 3056 aa9.6□□□□□ -0.87
SMC4-201ENST00000344722 FRYLO94915 3013 aa9.6□□□□□ -0.87
SMC4-201ENST00000344722 TACC2O95359 2948 aa9.58□□□□□ -0.88
SMC4-201ENST00000344722 COL6A3P12111 3177 aa9.56□□□□□ -0.88
SMC4-201ENST00000344722 KMT2BQ9UMN6 2715 aaPredicted RBP9.56□□□□□ -0.88
SMC4-201ENST00000344722 ITPR2Q14571 2701 aa9.56□□□□□ -0.88
SMC4-201ENST00000344722 SZT2Q5T011 3432 aa9.55□□□□□ -0.88
SMC4-201ENST00000344722 UTP20O75691 2785 aaKnown RBP9.55□□□□□ -0.88
SMC4-201ENST00000344722 BOD1L1Q8NFC6 3051 aa9.54□□□□□ -0.88
SMC4-201ENST00000344722 DMXL2Q8TDJ6 3036 aa9.48□□□□□ -0.89
SMC4-201ENST00000344722 FLNCQ14315 2725 aa9.46□□□□□ -0.9
SMC4-201ENST00000344722 HIVEP1P15822 2718 aa9.45□□□□□ -0.9
SMC4-201ENST00000344722 COL12A1Q99715 3063 aa9.41□□□□□ -0.9
SMC4-201ENST00000344722 REV3LO60673 3130 aa9.41□□□□□ -0.9
SMC4-201ENST00000344722 NIPBLQ6KC79 2804 aaeCLIP9.4□□□□□ -0.912e-6■■■■■ 27.8
SMC4-201ENST00000344722 HRNRQ86YZ3 2850 aaPredicted RBP9.4□□□□□ -0.91
SMC4-201ENST00000344722 XP32Q5T750 250 aa9.37□□□□□ -0.91
SMC4-201ENST00000344722 TNRC18O15417 2968 aaPredicted RBP9.32□□□□□ -0.92
SMC4-201ENST00000344722 KRTAP10-8P60410 259 aa9.32□□□□□ -0.92
SMC4-201ENST00000344722 CELSR2Q9HCU4 2923 aa9.27□□□□□ -0.93
SMC4-201ENST00000344722 CFAP47Q6ZTR5 3102 aa9.26□□□□□ -0.93
SMC4-201ENST00000344722 ZANQ9Y493 2812 aa9.24□□□□□ -0.93
SMC4-201ENST00000344722 SPTBN5Q9NRC6 3674 aaKnown RBP9.21□□□□□ -0.93
SMC4-201ENST00000344722 SPEGQ15772 3267 aa9.21□□□□□ -0.93
SMC4-201ENST00000344722 USP34Q70CQ2 3546 aa9.2□□□□□ -0.94
SMC4-201ENST00000344722 TPRXLQ17RH7 258 aa9.17□□□□□ -0.94
SMC4-201ENST00000344722 KRTAP12-2P59991 146 aa9.15□□□□□ -0.94
SMC4-201ENST00000344722 DCHS2Q6V1P9 2916 aa9.15□□□□□ -0.94
SMC4-201ENST00000344722 EYSQ5T1H1 3165 aa9.13□□□□□ -0.95
SMC4-201ENST00000344722 FBN2P35556 2912 aa9.09□□□□□ -0.95
SMC4-201ENST00000344722 TGP01266 2768 aa9.08□□□□□ -0.96
SMC4-201ENST00000344722 DMXL1Q9Y485 3027 aa9.06□□□□□ -0.96
SMC4-201ENST00000344722 KRTAP12-1P59990 96 aa9.01□□□□□ -0.97
SMC4-201ENST00000344722 LOC400499M0QZD8 3231 aa9.01□□□□□ -0.97
SMC4-201ENST00000344722 KRTAP3-1Q9BYR8 98 aa9□□□□□ -0.97
SMC4-201ENST00000344722 NF1P21359 2839 aa8.95□□□□□ -0.98
SMC4-201ENST00000344722 KRTAP13-4Q3LI77 160 aa8.92□□□□□ -0.98
SMC4-201ENST00000344722 MXRA5Q9NR99 2828 aa8.88□□□□□ -0.99
SMC4-201ENST00000344722 A0A1B0GVY2 172 aa8.87□□□□□ -0.99
SMC4-201ENST00000344722 MYO15AQ9UKN7 3530 aa8.84□□□□□ -0.99
SMC4-201ENST00000344722 TENM3Q9P273 2699 aa8.82□□□□□ -1
SMC4-201ENST00000344722 KRTAP10-6P60371 365 aaPredicted RBP8.82□□□□□ -1
SMC4-201ENST00000344722 KRTAP15-1Q3LI76 137 aa8.81□□□□□ -1
SMC4-201ENST00000344722 CELSR1Q9NYQ6 3014 aa8.8□□□□□ -1
SMC4-201ENST00000344722 CRYBG3Q68DQ2 2970 aa8.79□□□□□ -1
SMC4-201ENST00000344722 TENM4Q6N022 2769 aa8.75□□□□□ -1.01
SMC4-201ENST00000344722 DCHS1Q96JQ0 3298 aa8.73□□□□□ -1.01
SMC4-201ENST00000344722 KRTAP21-3Q3LHN1 58 aa8.72□□□□□ -1.01
SMC4-201ENST00000344722 WDFY3Q8IZQ1 3526 aa8.67□□□□□ -1.02
SMC4-201ENST00000344722 CSMD1Q96PZ7 3565 aa8.64□□□□□ -1.03
SMC4-201ENST00000344722 ZFHX4Q86UP3 3567 aa8.63□□□□□ -1.03
SMC4-201ENST00000344722 KRTAP10-10P60014 251 aa8.61□□□□□ -1.03
SMC4-201ENST00000344722 PRO2289Q9P1D8 64 aa8.6□□□□□ -1.03
SMC4-201ENST00000344722 RELNP78509 3460 aa8.56□□□□□ -1.04
SMC4-201ENST00000344722 TENM1Q9UKZ4 2725 aa8.56□□□□□ -1.04
SMC4-201ENST00000344722 TENM2Q9NT68 2774 aa8.55□□□□□ -1.04
SMC4-201ENST00000344722 PDZD2O15018 2839 aa8.54□□□□□ -1.04
SMC4-201ENST00000344722 KRTAP3-2Q9BYR7 98 aa8.52□□□□□ -1.05
SMC4-201ENST00000344722 SMG1Q96Q15 3661 aaKnown RBP8.46□□□□□ -1.06
SMC4-201ENST00000344722 ASPMQ8IZT6 3477 aa8.46□□□□□ -1.06
SMC4-201ENST00000344722 KRTAP3-3Q9BYR6 98 aa8.44□□□□□ -1.06
SMC4-201ENST00000344722 INE1O15225 51 aa8.43□□□□□ -1.06
SMC4-201ENST00000344722 PKD1L1Q8TDX9 2849 aa8.33□□□□□ -1.08
SMC4-201ENST00000344722 VWFP04275 2813 aa8.25□□□□□ -1.09
SMC4-201ENST00000344722 LAMA5O15230 3695 aa8.25□□□□□ -1.09
SMC4-201ENST00000344722 ANK3Q12955 4377 aaKnown RBP8.25□□□□□ -1.09
SMC4-201ENST00000344722 SVEP1Q4LDE5 3571 aa8.19□□□□□ -1.1
SMC4-201ENST00000344722 FBN3Q75N90 2809 aa8.16□□□□□ -1.1
SMC4-201ENST00000344722 ZFHX3Q15911 3703 aa8.15□□□□□ -1.11
SMC4-201ENST00000344722 SRRM2Q9UQ35 2752 aaKnown RBP8.14□□□□□ -1.11
SMC4-201ENST00000344722 MEGF8Q7Z7M0 2845 aa8.11□□□□□ -1.11
SMC4-201ENST00000344722 KRTAP23-1A1A580 65 aa8.1□□□□□ -1.11
SMC4-201ENST00000344722 DMDP11532 3685 aa8.06□□□□□ -1.12
SMC4-201ENST00000344722 FBN1P35555 2871 aaKnown RBP8.03□□□□□ -1.12
SMC4-201ENST00000344722 NBPF19A0A087WUL8 3843 aa8.01□□□□□ -1.13
SMC4-201ENST00000344722 OTOGQ6ZRI0 2925 aa7.98□□□□□ -1.13
SMC4-201ENST00000344722 MT1HL1P0DM35 61 aa7.93□□□□□ -1.14
SMC4-201ENST00000344722 KRTAP10-4P60372 401 aaPredicted RBP7.93□□□□□ -1.14
SMC4-201ENST00000344722 SPENQ96T58 3664 aaKnown RBP7.89□□□□□ -1.15
SMC4-201ENST00000344722 HUWE1Q7Z6Z7 4374 aaKnown RBP7.89□□□□□ -1.15
SMC4-201ENST00000344722 CUBNO60494 3623 aa7.86□□□□□ -1.15
SMC4-201ENST00000344722 KRTAP10-12P60413 245 aa7.84□□□□□ -1.15
SMC4-201ENST00000344722 TRRAPQ9Y4A5 3859 aa7.84□□□□□ -1.15
SMC4-201ENST00000344722 BSNQ9UPA5 3926 aa7.8□□□□□ -1.16
SMC4-201ENST00000344722 KRTAP12-3P60328 96 aa7.76□□□□□ -1.17
SMC4-201ENST00000344722 MUC3AQ02505 3323 aa7.75□□□□□ -1.17
SMC4-201ENST00000344722 LORP23490 312 aaPredicted RBP7.74□□□□□ -1.17
SMC4-201ENST00000344722 LCE3AQ5TA76 89 aa7.74□□□□□ -1.17
SMC4-201ENST00000344722 COL7A1Q02388 2944 aa7.7□□□□□ -1.18
SMC4-201ENST00000344722 CSMD2Q7Z408 3487 aa7.69□□□□□ -1.18
SMC4-201ENST00000344722 VPS13CQ709C8 3753 aa7.68□□□□□ -1.18
SMC4-201ENST00000344722 ALMS1Q8TCU4 4167 aa7.67□□□□□ -1.18
SMC4-201ENST00000344722 AKAP9Q99996 3911 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms