RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 ITPR1Q14643 2758 aa2.74□□□□□ -1.97
CSMD3-203ENST00000343508 Q6ZRN7 208 aaPredicted RBP2.74□□□□□ -1.97
CSMD3-203ENST00000343508 NBEAL2Q6ZNJ1 2754 aa2.74□□□□□ -1.97
CSMD3-203ENST00000343508 CELSR2Q9HCU4 2923 aa2.72□□□□□ -1.97
CSMD3-203ENST00000343508 FASNP49327 2511 aaKnown RBP2.71□□□□□ -1.97
CSMD3-203ENST00000343508 CFAP46Q8IYW2 2715 aa2.71□□□□□ -1.98
CSMD3-203ENST00000343508 Q6ZSA8 131 aa2.71□□□□□ -1.98
CSMD3-203ENST00000343508 CENPEQ02224 2701 aa2.7□□□□□ -1.98
CSMD3-203ENST00000343508 A0A0A0MQY5 61 aa2.7□□□□□ -1.98
CSMD3-203ENST00000343508 SETXQ7Z333 2677 aaKnown RBP2.69□□□□□ -1.98
CSMD3-203ENST00000343508 R4GN34 69 aa2.69□□□□□ -1.98
CSMD3-203ENST00000343508 KRTAP10-2P60368 255 aa2.69□□□□□ -1.98
CSMD3-203ENST00000343508 A8MUU9 505 aa2.69□□□□□ -1.98
CSMD3-203ENST00000343508 KRTAP16-1A8MUX0 517 aa2.69□□□□□ -1.98
CSMD3-203ENST00000343508 TEP1Q99973 2627 aaKnown RBP2.68□□□□□ -1.98
CSMD3-203ENST00000343508 ATRQ13535 2644 aa2.68□□□□□ -1.98
CSMD3-203ENST00000343508 FBN2P35556 2912 aa2.68□□□□□ -1.98
CSMD3-203ENST00000343508 CAMK2N1Q7Z7J9 78 aa2.67□□□□□ -1.98
CSMD3-203ENST00000343508 UNC79Q9P2D8 2635 aa2.67□□□□□ -1.98
CSMD3-203ENST00000343508 IGSF10Q6WRI0 2623 aa2.67□□□□□ -1.98
CSMD3-203ENST00000343508 MXRA5Q9NR99 2828 aa2.66□□□□□ -1.98
CSMD3-203ENST00000343508 KRTAP10-1P60331 282 aa2.66□□□□□ -1.98
CSMD3-203ENST00000343508 KRTAP13-2Q52LG2 175 aa2.66□□□□□ -1.98
CSMD3-203ENST00000343508 ITPR2Q14571 2701 aa2.66□□□□□ -1.98
CSMD3-203ENST00000343508 M0QZ58 72 aa2.65□□□□□ -1.99
CSMD3-203ENST00000343508 ZANQ9Y493 2812 aa2.64□□□□□ -1.99
CSMD3-203ENST00000343508 H0YAA0 97 aa2.64□□□□□ -1.99
CSMD3-203ENST00000343508 CSMD3Q7Z407 3707 aa2.63□□□□□ -1.99
CSMD3-203ENST00000343508 J3QL48 77 aa2.63□□□□□ -1.99
CSMD3-203ENST00000343508 KRTAP13-3Q3SY46 172 aa2.63□□□□□ -1.99
CSMD3-203ENST00000343508 C20orf166-AS1Q96NR2 134 aa2.63□□□□□ -1.99
CSMD3-203ENST00000343508 TRRAPQ9Y4A5 3859 aa2.62□□□□□ -1.99
CSMD3-203ENST00000343508 NDUFAF8A1L188 74 aa2.61□□□□□ -1.99
CSMD3-203ENST00000343508 USP24Q9UPU5 2620 aa2.6□□□□□ -1.99
CSMD3-203ENST00000343508 ANK3Q12955 4377 aaKnown RBP2.6□□□□□ -1.99
CSMD3-203ENST00000343508 MAST4O15021 2626 aa2.6□□□□□ -1.99
CSMD3-203ENST00000343508 NBEAL1Q6ZS30 2694 aa2.59□□□□□ -1.99
CSMD3-203ENST00000343508 FLNCQ14315 2725 aa2.59□□□□□ -2
CSMD3-203ENST00000343508 SEC61BP60468 96 aaKnown RBP2.59□□□□□ -2
CSMD3-203ENST00000343508 NF1P21359 2839 aa2.59□□□□□ -2
CSMD3-203ENST00000343508 UBR5O95071 2799 aaPredicted RBP2.59□□□□□ -2
CSMD3-203ENST00000343508 HELZ2Q9BYK8 2649 aaKnown RBP2.58□□□□□ -2
CSMD3-203ENST00000343508 KRTAP1-4P0C5Y4 121 aa2.58□□□□□ -2
CSMD3-203ENST00000343508 Q5VSD8 79 aa2.57□□□□□ -2
CSMD3-203ENST00000343508 FRAS1Q86XX4 4008 aa2.57□□□□□ -2
CSMD3-203ENST00000343508 HECTD1Q9ULT8 2610 aa2.55□□□□□ -2
CSMD3-203ENST00000343508 FLNBO75369 2602 aaKnown RBP2.55□□□□□ -2
CSMD3-203ENST00000343508 ANK2Q01484 3957 aa2.54□□□□□ -2
CSMD3-203ENST00000343508 BAHCC1Q9P281 2608 aa2.54□□□□□ -2
CSMD3-203ENST00000343508 HIVEP1P15822 2718 aa2.53□□□□□ -2
CSMD3-203ENST00000343508 PLAC4Q8WY50 150 aa2.53□□□□□ -2
CSMD3-203ENST00000343508 PP632Q6XCG6 107 aa2.53□□□□□ -2
CSMD3-203ENST00000343508 LYSTQ99698 3801 aa2.52□□□□□ -2.01
CSMD3-203ENST00000343508 NIPBLQ6KC79 2804 aaeCLIP2.52□□□□□ -2.01
CSMD3-203ENST00000343508 NSD1Q96L73 2696 aaPredicted RBP2.51□□□□□ -2.01
CSMD3-203ENST00000343508 PDZD2O15018 2839 aa2.5□□□□□ -2.01
CSMD3-203ENST00000343508 COL6A5A8TX70 2615 aa2.5□□□□□ -2.01
CSMD3-203ENST00000343508 C10orf95Q9H7T3 257 aa2.5□□□□□ -2.01
CSMD3-203ENST00000343508 P0C880 135 aa2.49□□□□□ -2.01
CSMD3-203ENST00000343508 M0R2T5 61 aa2.49□□□□□ -2.01
CSMD3-203ENST00000343508 MGAM2Q2M2H8 2515 aa2.48□□□□□ -2.01
CSMD3-203ENST00000343508 TNP1P09430 55 aa2.48□□□□□ -2.01
CSMD3-203ENST00000343508 HUWE1Q7Z6Z7 4374 aaKnown RBP2.48□□□□□ -2.01
CSMD3-203ENST00000343508 XP32Q5T750 250 aa2.48□□□□□ -2.01
CSMD3-203ENST00000343508 TENM2Q9NT68 2774 aa2.48□□□□□ -2.01
CSMD3-203ENST00000343508 DMBT1Q9UGM3 2413 aaPredicted RBP2.47□□□□□ -2.01
CSMD3-203ENST00000343508 CMYA5Q8N3K9 4069 aa2.47□□□□□ -2.01
CSMD3-203ENST00000343508 STAB1Q9NY15 2570 aa2.45□□□□□ -2.02
CSMD3-203ENST00000343508 NOTCH1P46531 2555 aa2.45□□□□□ -2.02
CSMD3-203ENST00000343508 TGP01266 2768 aa2.45□□□□□ -2.02
CSMD3-203ENST00000343508 FBN1P35555 2871 aaKnown RBP2.43□□□□□ -2.02
CSMD3-203ENST00000343508 VWFP04275 2813 aa2.43□□□□□ -2.02
CSMD3-203ENST00000343508 TPRXLQ17RH7 258 aa2.43□□□□□ -2.02
CSMD3-203ENST00000343508 KRTAP12-2P59991 146 aa2.43□□□□□ -2.02
CSMD3-203ENST00000343508 STAB2Q8WWQ8 2551 aa2.43□□□□□ -2.02
CSMD3-203ENST00000343508 FLG2Q5D862 2391 aaPredicted RBP2.42□□□□□ -2.02
CSMD3-203ENST00000343508 KRTAP3-1Q9BYR8 98 aa2.42□□□□□ -2.02
CSMD3-203ENST00000343508 PKD1L1Q8TDX9 2849 aa2.42□□□□□ -2.02
CSMD3-203ENST00000343508 KRTAP12-1P59990 96 aa2.4□□□□□ -2.03
CSMD3-203ENST00000343508 KRTAP21-3Q3LHN1 58 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 DNAH10Q8IVF4 4471 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 TENM3Q9P273 2699 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 DNAH9Q9NYC9 4486 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 DNAH1Q9P2D7 4330 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 KRTAP10-8P60410 259 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 OTOGQ6ZRI0 2925 aa2.39□□□□□ -2.03
CSMD3-203ENST00000343508 TENM4Q6N022 2769 aa2.38□□□□□ -2.03
CSMD3-203ENST00000343508 TENM1Q9UKZ4 2725 aa2.37□□□□□ -2.03
CSMD3-203ENST00000343508 KMT2AQ03164 3969 aa2.37□□□□□ -2.03
CSMD3-203ENST00000343508 KRTAP15-1Q3LI76 137 aa2.37□□□□□ -2.03
CSMD3-203ENST00000343508 ALMS1Q8TCU4 4167 aa2.37□□□□□ -2.03
CSMD3-203ENST00000343508 DNAH3Q8TD57 4116 aa2.36□□□□□ -2.03
CSMD3-203ENST00000343508 KRTAP10-6P60371 365 aaPredicted RBP2.36□□□□□ -2.03
CSMD3-203ENST00000343508 KRTAP13-4Q3LI77 160 aa2.36□□□□□ -2.03
CSMD3-203ENST00000343508 DNAH7Q8WXX0 4024 aa2.36□□□□□ -2.03
CSMD3-203ENST00000343508 SRRM2Q9UQ35 2752 aaKnown RBP2.34□□□□□ -2.04
CSMD3-203ENST00000343508 A0A1B0GVY2 172 aa2.33□□□□□ -2.04
CSMD3-203ENST00000343508 COL7A1Q02388 2944 aa2.33□□□□□ -2.04
CSMD3-203ENST00000343508 PRKDCP78527 4128 aaKnown RBP2.31□□□□□ -2.04
CSMD3-203ENST00000343508 VPS13BQ7Z7G8 4022 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms