RNA–Protein interactions for RNA: ENST00000331134.10

NPLOC4-201, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPLOC4, Length 4,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-201ENST00000331134 A0A1B0GU33 70 aa11.42□□□□□ -0.58
NPLOC4-201ENST00000331134 CSAG1Q6PB30 78 aa11.42□□□□□ -0.58
NPLOC4-201ENST00000331134 ZCCHC13Q8WW36 166 aaKnown RBP11.42□□□□□ -0.58
NPLOC4-201ENST00000331134 MXRA5Q9NR99 2828 aa11.42□□□□□ -0.58
NPLOC4-201ENST00000331134 A8MU10 97 aa11.41□□□□□ -0.58
NPLOC4-201ENST00000331134 KRTAP29-1A8MX34 341 aaPredicted RBP11.39□□□□□ -0.59
NPLOC4-201ENST00000331134 PANO1I0J062 215 aa11.38□□□□□ -0.59
NPLOC4-201ENST00000331134 H3BS24 57 aa11.37□□□□□ -0.59
NPLOC4-201ENST00000331134 TENM3Q9P273 2699 aa11.36□□□□□ -0.59
NPLOC4-201ENST00000331134 A0A087X002 238 aa11.32□□□□□ -0.6
NPLOC4-201ENST00000331134 NOTCH2NLQ7Z3S9 236 aa11.32□□□□□ -0.6
NPLOC4-201ENST00000331134 PLAC8Q9NZF1 115 aa11.28□□□□□ -0.6
NPLOC4-201ENST00000331134 KRTAP11-1Q8IUC1 163 aa11.27□□□□□ -0.61
NPLOC4-201ENST00000331134 KRTAP7-1Q8IUC3 87 aa11.23□□□□□ -0.61
NPLOC4-201ENST00000331134 ZFHX3Q15911 3703 aa11.21□□□□□ -0.61
NPLOC4-201ENST00000331134 Q6ZR54 194 aa11.19□□□□□ -0.62
NPLOC4-201ENST00000331134 VPS13CQ709C8 3753 aa11.18□□□□□ -0.62
NPLOC4-201ENST00000331134 CSMD2Q7Z408 3487 aa11.17□□□□□ -0.62
NPLOC4-201ENST00000331134 DMAC1Q96GE9 116 aa11.16□□□□□ -0.62
NPLOC4-201ENST00000331134 PDZD2O15018 2839 aa11.16□□□□□ -0.62
NPLOC4-201ENST00000331134 COX6B2Q6YFQ2 88 aa11.14□□□□□ -0.63
NPLOC4-201ENST00000331134 ADM2Q7Z4H4 148 aa11.12□□□□□ -0.63
NPLOC4-201ENST00000331134 LCE6AA0A183 80 aa11.11□□□□□ -0.63
NPLOC4-201ENST00000331134 PKD1L1Q8TDX9 2849 aa11.08□□□□□ -0.64
NPLOC4-201ENST00000331134 TENM1Q9UKZ4 2725 aa11.06□□□□□ -0.64
NPLOC4-201ENST00000331134 A6NN06 94 aa11.05□□□□□ -0.64
NPLOC4-201ENST00000331134 KRTAP10-2P60368 255 aa11.05□□□□□ -0.64
NPLOC4-201ENST00000331134 LINC00483Q53H64 154 aa11.04□□□□□ -0.64
NPLOC4-201ENST00000331134 SPATA8Q6RVD6 105 aa11.03□□□□□ -0.64
NPLOC4-201ENST00000331134 KRTAP10-1P60331 282 aa10.99□□□□□ -0.65
NPLOC4-201ENST00000331134 J3QL48 77 aa10.98□□□□□ -0.65
NPLOC4-201ENST00000331134 FBN1P35555 2871 aaKnown RBP10.94□□□□□ -0.66
NPLOC4-201ENST00000331134 LUZP6Q538Z0 58 aa10.93□□□□□ -0.66
NPLOC4-201ENST00000331134 Q6ZSA8 131 aa10.93□□□□□ -0.66
NPLOC4-201ENST00000331134 VWFP04275 2813 aa10.91□□□□□ -0.66
NPLOC4-201ENST00000331134 RPL37P61927 97 aaKnown RBP10.89□□□□□ -0.67
NPLOC4-201ENST00000331134 CAMK2N1Q7Z7J9 78 aa10.89□□□□□ -0.67
NPLOC4-201ENST00000331134 H1FX-AS1Q4G0G2 97 aa10.88□□□□□ -0.67
NPLOC4-201ENST00000331134 TGP01266 2768 aa10.85□□□□□ -0.67
NPLOC4-201ENST00000331134 S4R3F8 94 aa10.85□□□□□ -0.67
NPLOC4-201ENST00000331134 ROMO1P60602 79 aa10.82□□□□□ -0.68
NPLOC4-201ENST00000331134 Q6ZRN7 208 aaPredicted RBP10.78□□□□□ -0.68
NPLOC4-201ENST00000331134 SRRM2Q9UQ35 2752 aaKnown RBP10.77□□□□□ -0.68
NPLOC4-201ENST00000331134 KRTAP13-1Q8IUC0 172 aa10.77□□□□□ -0.69
NPLOC4-201ENST00000331134 R4GN34 69 aa10.73□□□□□ -0.69
NPLOC4-201ENST00000331134 ASB16-AS1Q495Z4 193 aa10.7□□□□□ -0.7
NPLOC4-201ENST00000331134 KRTAP13-2Q52LG2 175 aa10.7□□□□□ -0.7
NPLOC4-201ENST00000331134 NBPF19A0A087WUL8 3843 aa10.67□□□□□ -0.7
NPLOC4-201ENST00000331134 KRTAP25-1Q3LHN0 102 aa10.65□□□□□ -0.7
NPLOC4-201ENST00000331134 TENM2Q9NT68 2774 aa10.64□□□□□ -0.71
NPLOC4-201ENST00000331134 M0QZ58 72 aa10.6□□□□□ -0.71
NPLOC4-201ENST00000331134 ZNF469Q96JG9 3925 aaPredicted RBP10.56□□□□□ -0.72
NPLOC4-201ENST00000331134 Q5VSD8 79 aa10.5□□□□□ -0.73
NPLOC4-201ENST00000331134 NDUFAF8A1L188 74 aa10.48□□□□□ -0.73
NPLOC4-201ENST00000331134 OTOGQ6ZRI0 2925 aa10.47□□□□□ -0.73
NPLOC4-201ENST00000331134 A0A0A0MQY5 61 aa10.45□□□□□ -0.74
NPLOC4-201ENST00000331134 M0R2T5 61 aa10.42□□□□□ -0.74
NPLOC4-201ENST00000331134 A8MUU9 505 aa10.39□□□□□ -0.75
NPLOC4-201ENST00000331134 FBN3Q75N90 2809 aa10.36□□□□□ -0.75
NPLOC4-201ENST00000331134 AKAP9Q99996 3911 aa10.34□□□□□ -0.75
NPLOC4-201ENST00000331134 KRTAP16-1A8MUX0 517 aa10.32□□□□□ -0.76
NPLOC4-201ENST00000331134 TRRAPQ9Y4A5 3859 aa10.31□□□□□ -0.76
NPLOC4-201ENST00000331134 C10orf95Q9H7T3 257 aa10.29□□□□□ -0.76
NPLOC4-201ENST00000331134 SEC61BP60468 96 aaKnown RBP10.26□□□□□ -0.77
NPLOC4-201ENST00000331134 H0YAA0 97 aa10.25□□□□□ -0.77
NPLOC4-201ENST00000331134 ANK3Q12955 4377 aaKnown RBP10.25□□□□□ -0.77
NPLOC4-201ENST00000331134 RPS29P62273 56 aaKnown RBP10.2□□□□□ -0.78
NPLOC4-201ENST00000331134 COL7A1Q02388 2944 aa10.19□□□□□ -0.78
NPLOC4-201ENST00000331134 KRTAP1-4P0C5Y4 121 aa10.18□□□□□ -0.78
NPLOC4-201ENST00000331134 C20orf166-AS1Q96NR2 134 aa10.13□□□□□ -0.79
NPLOC4-201ENST00000331134 MEGF8Q7Z7M0 2845 aa10.12□□□□□ -0.79
NPLOC4-201ENST00000331134 PLAC4Q8WY50 150 aa10□□□□□ -0.81
NPLOC4-201ENST00000331134 KRTAP13-3Q3SY46 172 aa9.99□□□□□ -0.81
NPLOC4-201ENST00000331134 P0C880 135 aa9.91□□□□□ -0.82
NPLOC4-201ENST00000331134 XP32Q5T750 250 aa9.83□□□□□ -0.84
NPLOC4-201ENST00000331134 KRTAP10-8P60410 259 aa9.77□□□□□ -0.85
NPLOC4-201ENST00000331134 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
NPLOC4-201ENST00000331134 TNP1P09430 55 aa9.71□□□□□ -0.86
NPLOC4-201ENST00000331134 A0A1B0GVY2 172 aa9.6□□□□□ -0.87
NPLOC4-201ENST00000331134 KRTAP3-1Q9BYR8 98 aa9.55□□□□□ -0.88
NPLOC4-201ENST00000331134 KRTAP12-2P59991 146 aa9.53□□□□□ -0.88
NPLOC4-201ENST00000331134 TPRXLQ17RH7 258 aa9.51□□□□□ -0.89
NPLOC4-201ENST00000331134 PP632Q6XCG6 107 aa9.46□□□□□ -0.89
NPLOC4-201ENST00000331134 ANK2Q01484 3957 aa9.44□□□□□ -0.9
NPLOC4-201ENST00000331134 HUWE1Q7Z6Z7 4374 aaKnown RBP9.4□□□□□ -0.91
NPLOC4-201ENST00000331134 DNAH10Q8IVF4 4471 aa9.38□□□□□ -0.91
NPLOC4-201ENST00000331134 KRTAP13-4Q3LI77 160 aa9.37□□□□□ -0.91
NPLOC4-201ENST00000331134 KRTAP12-1P59990 96 aa9.35□□□□□ -0.91
NPLOC4-201ENST00000331134 KRTAP10-6P60371 365 aaPredicted RBP9.25□□□□□ -0.93
NPLOC4-201ENST00000331134 LYSTQ99698 3801 aa9.2□□□□□ -0.94
NPLOC4-201ENST00000331134 KRTAP10-10P60014 251 aa9.11□□□□□ -0.95
NPLOC4-201ENST00000331134 DNAH9Q9NYC9 4486 aa9.09□□□□□ -0.95
NPLOC4-201ENST00000331134 PLECQ15149 4684 aaKnown RBP9.09□□□□□ -0.95
NPLOC4-201ENST00000331134 CMYA5Q8N3K9 4069 aa9.08□□□□□ -0.96
NPLOC4-201ENST00000331134 KRTAP21-3Q3LHN1 58 aa9.06□□□□□ -0.96
NPLOC4-201ENST00000331134 DNAH1Q9P2D7 4330 aa8.96□□□□□ -0.98
NPLOC4-201ENST00000331134 DNAH3Q8TD57 4116 aa8.95□□□□□ -0.98
NPLOC4-201ENST00000331134 KRTAP3-2Q9BYR7 98 aa8.95□□□□□ -0.98
NPLOC4-201ENST00000331134 DNAH7Q8WXX0 4024 aa8.93□□□□□ -0.98
NPLOC4-201ENST00000331134 KRTAP3-3Q9BYR6 98 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms