RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 LIMD2Q9BT23 127 aa5.2□□□□□ -1.58
CLK1-201ENST00000321356 ZNF861PO60384 105 aa5.19□□□□□ -1.58
CLK1-201ENST00000321356 CD164Q04900 197 aa5.19□□□□□ -1.58
CLK1-201ENST00000321356 COA5Q86WW8 74 aa5.18□□□□□ -1.58
CLK1-201ENST00000321356 IGHV6-1A0A0B4J1U7 121 aa5.17□□□□□ -1.58
CLK1-201ENST00000321356 MEGF8Q7Z7M0 2845 aa5.17□□□□□ -1.58
CLK1-201ENST00000321356 MRPL34Q9BQ48 92 aaKnown RBP5.17□□□□□ -1.58
CLK1-201ENST00000321356 PCOTHQ58A44 107 aa5.16□□□□□ -1.58
CLK1-201ENST00000321356 ANAPC11Q9NYG5 84 aa5.16□□□□□ -1.58
CLK1-201ENST00000321356 A0A087X002 238 aa5.15□□□□□ -1.58
CLK1-201ENST00000321356 CDK2AP2O75956 126 aa5.15□□□□□ -1.58
CLK1-201ENST00000321356 NOTCH2NLQ7Z3S9 236 aa5.15□□□□□ -1.58
CLK1-201ENST00000321356 FRAS1Q86XX4 4008 aa5.15□□□□□ -1.58
CLK1-201ENST00000321356 LOC101927531A0A1B0GV80 90 aa5.14□□□□□ -1.59
CLK1-201ENST00000321356 TGP01266 2768 aa5.14□□□□□ -1.59
CLK1-201ENST00000321356 KMT2AQ03164 3969 aa5.14□□□□□ -1.59
CLK1-201ENST00000321356 NDUFS5O43920 106 aa5.13□□□□□ -1.59
CLK1-201ENST00000321356 PRR15LQ9BU68 103 aa5.13□□□□□ -1.59
CLK1-201ENST00000321356 KRTAP13-3Q3SY46 172 aa5.13□□□□□ -1.59
CLK1-201ENST00000321356 IGLV7-43P04211 117 aa5.12□□□□□ -1.59
CLK1-201ENST00000321356 Q75L30 129 aa5.12□□□□□ -1.59
CLK1-201ENST00000321356 CHKB-CPT1BH3BT56 60 aa5.11□□□□□ -1.59
CLK1-201ENST00000321356 A8MU10 97 aa5.11□□□□□ -1.59
CLK1-201ENST00000321356 ALMS1Q8TCU4 4167 aa5.1□□□□□ -1.59
CLK1-201ENST00000321356 HRES1P13985 223 aa5.1□□□□□ -1.59
CLK1-201ENST00000321356 Q5W150 140 aa5.09□□□□□ -1.59
CLK1-201ENST00000321356 LINC01558Q9Y6Z2 57 aa5.09□□□□□ -1.59
CLK1-201ENST00000321356 DNAH11Q96DT5 4516 aa5.09□□□□□ -1.59
CLK1-201ENST00000321356 C1orf134Q5TEV5 83 aa5.09□□□□□ -1.6
CLK1-201ENST00000321356 DNAH6Q9C0G6 4158 aa5.09□□□□□ -1.6
CLK1-201ENST00000321356 DNAH5Q8TE73 4624 aa5.08□□□□□ -1.6
CLK1-201ENST00000321356 SSBP3-AS1Q7Z2R9 100 aa5.08□□□□□ -1.6
CLK1-201ENST00000321356 SPINK6Q6UWN8 80 aa5.07□□□□□ -1.6
CLK1-201ENST00000321356 CIRBP-AS1Q8TBR5 109 aa5.07□□□□□ -1.6
CLK1-201ENST00000321356 C8orf87E5RJ46 101 aa5.07□□□□□ -1.6
CLK1-201ENST00000321356 PMAIP1Q13794 54 aa5.07□□□□□ -1.6
CLK1-201ENST00000321356 SPAG11AQ6PDA7 123 aa5.06□□□□□ -1.6
CLK1-201ENST00000321356 LCA10Q71F78 164 aa5.06□□□□□ -1.6
CLK1-201ENST00000321356 A6NED7 52 aa5.04□□□□□ -1.6
CLK1-201ENST00000321356 ATP11AUNQ6ZP68 121 aa5.03□□□□□ -1.6
CLK1-201ENST00000321356 CDC42SE1Q9NRR8 79 aa5.03□□□□□ -1.6
CLK1-201ENST00000321356 LRP1BQ9NZR2 4599 aa5.03□□□□□ -1.6
CLK1-201ENST00000321356 PKD1P98161 4303 aa5.02□□□□□ -1.61
CLK1-201ENST00000321356 KRTAP10-2P60368 255 aa5.01□□□□□ -1.61
CLK1-201ENST00000321356 KRTAP13-2Q52LG2 175 aa5.01□□□□□ -1.61
CLK1-201ENST00000321356 XP32Q5T750 250 aa5.01□□□□□ -1.61
CLK1-201ENST00000321356 FAM229AH3BQW9 127 aa5□□□□□ -1.61
CLK1-201ENST00000321356 LINC00313P59037 77 aa5□□□□□ -1.61
CLK1-201ENST00000321356 ACYP2P14621 99 aa5□□□□□ -1.61
CLK1-201ENST00000321356 Q6ZSA8 131 aa5□□□□□ -1.61
CLK1-201ENST00000321356 DMAC1Q96GE9 116 aa5□□□□□ -1.61
CLK1-201ENST00000321356 LY6G6CO95867 125 aa4.99□□□□□ -1.61
CLK1-201ENST00000321356 PRR26Q8N8Z3 221 aa4.99□□□□□ -1.61
CLK1-201ENST00000321356 FAT2Q9NYQ8 4349 aa4.99□□□□□ -1.61
CLK1-201ENST00000321356 KRTAP16-1A8MUX0 517 aa4.98□□□□□ -1.61
CLK1-201ENST00000321356 SPINK7P58062 85 aa4.98□□□□□ -1.61
CLK1-201ENST00000321356 A6NN06 94 aa4.98□□□□□ -1.61
CLK1-201ENST00000321356 IGKV2-30P06310 120 aa4.98□□□□□ -1.61
CLK1-201ENST00000321356 SPTSSBQ8NFR3 76 aa4.98□□□□□ -1.61
CLK1-201ENST00000321356 DNHD1Q96M86 4753 aa4.96□□□□□ -1.62
CLK1-201ENST00000321356 KRTAP1-4P0C5Y4 121 aa4.96□□□□□ -1.62
CLK1-201ENST00000321356 SEC61GP60059 68 aa4.96□□□□□ -1.62
CLK1-201ENST00000321356 KTN1-AS1Q86SY8 53 aa4.96□□□□□ -1.62
CLK1-201ENST00000321356 KRTAP10-1P60331 282 aa4.95□□□□□ -1.62
CLK1-201ENST00000321356 RETNLBQ9BQ08 111 aa4.92□□□□□ -1.62
CLK1-201ENST00000321356 VPS13BQ7Z7G8 4022 aa4.92□□□□□ -1.62
CLK1-201ENST00000321356 HYDINQ4G0P3 5121 aa4.9□□□□□ -1.62
CLK1-201ENST00000321356 SPINK1P00995 79 aa4.87□□□□□ -1.63
CLK1-201ENST00000321356 C7orf65Q6ZTY9 151 aa4.87□□□□□ -1.63
CLK1-201ENST00000321356 SACSQ9NZJ4 4579 aa4.86□□□□□ -1.63
CLK1-201ENST00000321356 IGKV2D-30A0A075B6S6 120 aa4.86□□□□□ -1.63
CLK1-201ENST00000321356 A0A1B0GU69 56 aa4.86□□□□□ -1.63
CLK1-201ENST00000321356 PLA2G1BP04054 148 aaKnown RBP4.86□□□□□ -1.63
CLK1-201ENST00000321356 TYMSOSQ8TAI1 123 aa4.86□□□□□ -1.63
CLK1-201ENST00000321356 KRTAP4-8Q9BYQ9 185 aa4.84□□□□□ -1.63
CLK1-201ENST00000321356 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
CLK1-201ENST00000321356 RPS29P62273 56 aaKnown RBP4.83□□□□□ -1.64
CLK1-201ENST00000321356 RBM12B-AS1Q9P1G2 102 aa4.83□□□□□ -1.64
CLK1-201ENST00000321356 PKHD1P08F94 4074 aa4.82□□□□□ -1.64
CLK1-201ENST00000321356 UQCR11O14957 56 aa4.79□□□□□ -1.64
CLK1-201ENST00000321356 LINC00304Q8N9R0 145 aa4.79□□□□□ -1.64
CLK1-201ENST00000321356 MIR22HGQ0VDD5 57 aa4.78□□□□□ -1.64
CLK1-201ENST00000321356 PKHD1L1Q86WI1 4243 aa4.78□□□□□ -1.64
CLK1-201ENST00000321356 DYNC1H1Q14204 4646 aaKnown RBP4.77□□□□□ -1.65
CLK1-201ENST00000321356 APOBP04114 4563 aaKnown RBP4.76□□□□□ -1.65
CLK1-201ENST00000321356 Q8N1X5 172 aa4.75□□□□□ -1.65
CLK1-201ENST00000321356 A8MUU9 505 aa4.74□□□□□ -1.65
CLK1-201ENST00000321356 C20orf166-AS1Q96NR2 134 aa4.74□□□□□ -1.65
CLK1-201ENST00000321356 KRTAP9-2Q9BYQ4 174 aa4.74□□□□□ -1.65
CLK1-201ENST00000321356 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.73□□□□□ -1.65
CLK1-201ENST00000321356 FAT1Q14517 4588 aa4.73□□□□□ -1.65
CLK1-201ENST00000321356 KRTAP9-6A0A140TA67 174 aa4.71□□□□□ -1.66
CLK1-201ENST00000321356 KRTAP10-4P60372 401 aaPredicted RBP4.71□□□□□ -1.66
CLK1-201ENST00000321356 PRAC1Q96KF2 57 aa4.7□□□□□ -1.66
CLK1-201ENST00000321356 ADM2Q7Z4H4 148 aa4.69□□□□□ -1.66
CLK1-201ENST00000321356 KRTAP3-1Q9BYR8 98 aa4.69□□□□□ -1.66
CLK1-201ENST00000321356 C9orf92A6NGG3 77 aa4.69□□□□□ -1.66
CLK1-201ENST00000321356 SMR3BP02814 79 aaPredicted RBP4.69□□□□□ -1.66
CLK1-201ENST00000321356 A0A1B0GVY2 172 aa4.67□□□□□ -1.66
CLK1-201ENST00000321356 KRTAP21-3Q3LHN1 58 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms