RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 MRPL34Q9BQ48 92 aaKnown RBP5.66□□□□□ -1.5
TMEM39A-201ENST00000319172 FP248Q71RG6 208 aaPredicted RBP5.65□□□□□ -1.5
TMEM39A-201ENST00000319172 A0A1B0GVX0 72 aa5.65□□□□□ -1.5
TMEM39A-201ENST00000319172 SPRR1BP22528 89 aa5.63□□□□□ -1.51
TMEM39A-201ENST00000319172 H7BZZ5 65 aa5.63□□□□□ -1.51
TMEM39A-201ENST00000319172 ACYP2P14621 99 aa5.6□□□□□ -1.51
TMEM39A-201ENST00000319172 SRRM2Q9UQ35 2752 aaKnown RBP5.6□□□□□ -1.51
TMEM39A-201ENST00000319172 IGLV8-61A0A075B6I0 122 aa5.59□□□□□ -1.51
TMEM39A-201ENST00000319172 LINC01554Q52M75 96 aa5.59□□□□□ -1.51
TMEM39A-201ENST00000319172 SEC61BP60468 96 aaKnown RBP5.58□□□□□ -1.52
TMEM39A-201ENST00000319172 LOC101927531A0A1B0GV80 90 aa5.58□□□□□ -1.52
TMEM39A-201ENST00000319172 AKAP9Q99996 3911 aa5.56□□□□□ -1.52
TMEM39A-201ENST00000319172 IGLV7-46A0A075B6I9 117 aa5.56□□□□□ -1.52
TMEM39A-201ENST00000319172 H3BPC8 53 aa5.55□□□□□ -1.52
TMEM39A-201ENST00000319172 FAM229BQ4G0N7 80 aa5.55□□□□□ -1.52
TMEM39A-201ENST00000319172 OCR1Q9BZK8 76 aa5.55□□□□□ -1.52
TMEM39A-201ENST00000319172 A0A1B0GU69 56 aa5.55□□□□□ -1.52
TMEM39A-201ENST00000319172 LINC00472Q9H8W2 130 aa5.55□□□□□ -1.52
TMEM39A-201ENST00000319172 Q75L30 129 aa5.55□□□□□ -1.52
TMEM39A-201ENST00000319172 FBN3Q75N90 2809 aa5.54□□□□□ -1.52
TMEM39A-201ENST00000319172 Q5VSD8 79 aa5.53□□□□□ -1.52
TMEM39A-201ENST00000319172 LINC00483Q53H64 154 aa5.52□□□□□ -1.53
TMEM39A-201ENST00000319172 MMP24-AS1A0A0U1RRL7 71 aa5.51□□□□□ -1.53
TMEM39A-201ENST00000319172 Q6ZSA8 131 aa5.5□□□□□ -1.53
TMEM39A-201ENST00000319172 KRTAP13-1Q8IUC0 172 aa5.5□□□□□ -1.53
TMEM39A-201ENST00000319172 CDC42SE1Q9NRR8 79 aa5.5□□□□□ -1.53
TMEM39A-201ENST00000319172 CYSTM1Q9H1C7 97 aa5.49□□□□□ -1.53
TMEM39A-201ENST00000319172 Q8N1X5 172 aa5.47□□□□□ -1.53
TMEM39A-201ENST00000319172 A6NN06 94 aa5.46□□□□□ -1.54
TMEM39A-201ENST00000319172 M0R2T5 61 aa5.43□□□□□ -1.54
TMEM39A-201ENST00000319172 COA5Q86WW8 74 aa5.43□□□□□ -1.54
TMEM39A-201ENST00000319172 KRTAP13-2Q52LG2 175 aa5.41□□□□□ -1.54
TMEM39A-201ENST00000319172 COL7A1Q02388 2944 aa5.39□□□□□ -1.55
TMEM39A-201ENST00000319172 Q8N9P0 234 aaPredicted RBP5.39□□□□□ -1.55
TMEM39A-201ENST00000319172 MEGF8Q7Z7M0 2845 aa5.38□□□□□ -1.55
TMEM39A-201ENST00000319172 KRTAP29-1A8MX34 341 aaPredicted RBP5.37□□□□□ -1.55
TMEM39A-201ENST00000319172 SPANXA2-OT1Q8N9U9 137 aa5.34□□□□□ -1.55
TMEM39A-201ENST00000319172 HRES1P13985 223 aa5.34□□□□□ -1.55
TMEM39A-201ENST00000319172 Q5W150 140 aa5.34□□□□□ -1.56
TMEM39A-201ENST00000319172 ZCCHC13Q8WW36 166 aaKnown RBP5.32□□□□□ -1.56
TMEM39A-201ENST00000319172 UQCR11O14957 56 aa5.32□□□□□ -1.56
TMEM39A-201ENST00000319172 Q5VV11 94 aa5.3□□□□□ -1.56
TMEM39A-201ENST00000319172 HUWE1Q7Z6Z7 4374 aaKnown RBP5.3□□□□□ -1.56
TMEM39A-201ENST00000319172 SPINK7P58062 85 aa5.3□□□□□ -1.56
TMEM39A-201ENST00000319172 A0A0D9SG42 100 aa5.3□□□□□ -1.56
TMEM39A-201ENST00000319172 KRTAP1-4P0C5Y4 121 aa5.29□□□□□ -1.56
TMEM39A-201ENST00000319172 SPINT4Q6UDR6 99 aa5.28□□□□□ -1.56
TMEM39A-201ENST00000319172 KRTAP16-1A8MUX0 517 aa5.27□□□□□ -1.57
TMEM39A-201ENST00000319172 CSMD3Q7Z407 3707 aa5.24□□□□□ -1.57
TMEM39A-201ENST00000319172 MIR22HGQ0VDD5 57 aa5.24□□□□□ -1.57
TMEM39A-201ENST00000319172 CSAG1Q6PB30 78 aa5.23□□□□□ -1.57
TMEM39A-201ENST00000319172 A0A1B0GVY2 172 aa5.2□□□□□ -1.58
TMEM39A-201ENST00000319172 DNHD1Q96M86 4753 aa5.2□□□□□ -1.58
TMEM39A-201ENST00000319172 RPS29P62273 56 aaKnown RBP5.2□□□□□ -1.58
TMEM39A-201ENST00000319172 LINC01558Q9Y6Z2 57 aa5.19□□□□□ -1.58
TMEM39A-201ENST00000319172 CAMK2N1Q7Z7J9 78 aa5.19□□□□□ -1.58
TMEM39A-201ENST00000319172 DNAH9Q9NYC9 4486 aa5.18□□□□□ -1.58
TMEM39A-201ENST00000319172 S4R3F8 94 aa5.16□□□□□ -1.58
TMEM39A-201ENST00000319172 CRIPTQ9P021 101 aa5.15□□□□□ -1.58
TMEM39A-201ENST00000319172 A0A1B0GU33 70 aa5.14□□□□□ -1.59
TMEM39A-201ENST00000319172 R4GN34 69 aa5.13□□□□□ -1.59
TMEM39A-201ENST00000319172 DMAC1Q96GE9 116 aa5.13□□□□□ -1.59
TMEM39A-201ENST00000319172 PRAC1Q96KF2 57 aa5.12□□□□□ -1.59
TMEM39A-201ENST00000319172 ROMO1P60602 79 aa5.09□□□□□ -1.59
TMEM39A-201ENST00000319172 LUZP6Q538Z0 58 aa5.09□□□□□ -1.6
TMEM39A-201ENST00000319172 PLECQ15149 4684 aaKnown RBP5.07□□□□□ -1.6
TMEM39A-201ENST00000319172 PRKDCP78527 4128 aaKnown RBP5.05□□□□□ -1.6
TMEM39A-201ENST00000319172 A8MUU9 505 aa5.05□□□□□ -1.6
TMEM39A-201ENST00000319172 RPL37P61927 97 aaKnown RBP5.04□□□□□ -1.6
TMEM39A-201ENST00000319172 C20orf166-AS1Q96NR2 134 aa5.04□□□□□ -1.6
TMEM39A-201ENST00000319172 M0QZ58 72 aa5.01□□□□□ -1.61
TMEM39A-201ENST00000319172 KRTAP10-8P60410 259 aa5□□□□□ -1.61
TMEM39A-201ENST00000319172 ANK2Q01484 3957 aa5□□□□□ -1.61
TMEM39A-201ENST00000319172 XP32Q5T750 250 aa5□□□□□ -1.61
TMEM39A-201ENST00000319172 STARD9Q9P2P6 4700 aa4.99□□□□□ -1.61
TMEM39A-201ENST00000319172 DNAH10Q8IVF4 4471 aa4.98□□□□□ -1.61
TMEM39A-201ENST00000319172 DNAH1Q9P2D7 4330 aa4.96□□□□□ -1.62
TMEM39A-201ENST00000319172 ADM2Q7Z4H4 148 aa4.95□□□□□ -1.62
TMEM39A-201ENST00000319172 H1FX-AS1Q4G0G2 97 aa4.95□□□□□ -1.62
TMEM39A-201ENST00000319172 SPATA8Q6RVD6 105 aa4.94□□□□□ -1.62
TMEM39A-201ENST00000319172 KRTAP25-1Q3LHN0 102 aa4.92□□□□□ -1.62
TMEM39A-201ENST00000319172 KRTAP13-3Q3SY46 172 aa4.92□□□□□ -1.62
TMEM39A-201ENST00000319172 DNAH11Q96DT5 4516 aa4.92□□□□□ -1.62
TMEM39A-201ENST00000319172 VPS13DQ5THJ4 4388 aa4.91□□□□□ -1.62
TMEM39A-201ENST00000319172 A8MU10 97 aa4.89□□□□□ -1.63
TMEM39A-201ENST00000319172 PLAC4Q8WY50 150 aa4.89□□□□□ -1.63
TMEM39A-201ENST00000319172 DNAH5Q8TE73 4624 aa4.89□□□□□ -1.63
TMEM39A-201ENST00000319172 TPRXLQ17RH7 258 aa4.88□□□□□ -1.63
TMEM39A-201ENST00000319172 CMYA5Q8N3K9 4069 aa4.88□□□□□ -1.63
TMEM39A-201ENST00000319172 KRTAP10-4P60372 401 aaPredicted RBP4.88□□□□□ -1.63
TMEM39A-201ENST00000319172 DNAH3Q8TD57 4116 aa4.87□□□□□ -1.63
TMEM39A-201ENST00000319172 KMT2AQ03164 3969 aa4.85□□□□□ -1.63
TMEM39A-201ENST00000319172 ALMS1Q8TCU4 4167 aa4.83□□□□□ -1.64
TMEM39A-201ENST00000319172 KRTAP4-5Q9BYR2 181 aa4.82□□□□□ -1.64
TMEM39A-201ENST00000319172 MT1HL1P0DM35 61 aa4.8□□□□□ -1.64
TMEM39A-201ENST00000319172 LYSTQ99698 3801 aa4.8□□□□□ -1.64
TMEM39A-201ENST00000319172 FAT1Q14517 4588 aa4.8□□□□□ -1.64
TMEM39A-201ENST00000319172 DNAH17Q9UFH2 4485 aa4.79□□□□□ -1.64
TMEM39A-201ENST00000319172 DYNC1H1Q14204 4646 aaKnown RBP4.77□□□□□ -1.65
TMEM39A-201ENST00000319172 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms