RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 IGLV9-49A0A0B4J1Y8 123 aa3.88□□□□□ -1.79
ZNF540-201ENST00000316433 NUPR2A6NF83 97 aa3.88□□□□□ -1.79
ZNF540-201ENST00000316433 Q5W150 140 aa3.88□□□□□ -1.79
ZNF540-201ENST00000316433 SPINT4Q6UDR6 99 aa3.88□□□□□ -1.79
ZNF540-201ENST00000316433 SPACA4Q8TDM5 124 aa3.88□□□□□ -1.79
ZNF540-201ENST00000316433 TENM4Q6N022 2769 aa3.87□□□□□ -1.79
ZNF540-201ENST00000316433 ACANP16112 2415 aa3.87□□□□□ -1.79
ZNF540-201ENST00000316433 CRIPTQ9P021 101 aa3.86□□□□□ -1.79
ZNF540-201ENST00000316433 FN1P02751 2386 aaKnown RBP3.86□□□□□ -1.79
ZNF540-201ENST00000316433 A0A087WTM6 91 aa3.86□□□□□ -1.79
ZNF540-201ENST00000316433 MTORP42345 2549 aa3.85□□□□□ -1.79
ZNF540-201ENST00000316433 SMR3AQ99954 134 aa3.85□□□□□ -1.79
ZNF540-201ENST00000316433 SSBP3-AS1Q7Z2R9 100 aa3.84□□□□□ -1.79
ZNF540-201ENST00000316433 DNAH9Q9NYC9 4486 aa3.84□□□□□ -1.79
ZNF540-201ENST00000316433 KRTAP24-1Q3LI83 254 aa3.84□□□□□ -1.8
ZNF540-201ENST00000316433 WWC2-AS2Q96NR7 200 aa3.84□□□□□ -1.8
ZNF540-201ENST00000316433 NBEAL2Q6ZNJ1 2754 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 H0YAA0 97 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 KRTAP15-1Q3LI76 137 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 KRTAP11-1Q8IUC1 163 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 LUZP6Q538Z0 58 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 KRTAP1-5Q9BYS1 174 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 TRRAPQ9Y4A5 3859 aa3.83□□□□□ -1.8
ZNF540-201ENST00000316433 GCN1Q92616 2671 aaKnown RBP3.82□□□□□ -1.8
ZNF540-201ENST00000316433 LY6G6CO95867 125 aa3.82□□□□□ -1.8
ZNF540-201ENST00000316433 F8P00451 2351 aa3.82□□□□□ -1.8
ZNF540-201ENST00000316433 HECTD4Q9Y4D8 3996 aa3.82□□□□□ -1.8
ZNF540-201ENST00000316433 ITPR2Q14571 2701 aa3.82□□□□□ -1.8
ZNF540-201ENST00000316433 DNAH2Q9P225 4427 aa3.82□□□□□ -1.8
ZNF540-201ENST00000316433 HIVEP1P15822 2718 aa3.81□□□□□ -1.8
ZNF540-201ENST00000316433 VWFP04275 2813 aa3.81□□□□□ -1.8
ZNF540-201ENST00000316433 FAM229AH3BQW9 127 aa3.8□□□□□ -1.8
ZNF540-201ENST00000316433 NBDYA0A0U1RRE5 68 aa3.8□□□□□ -1.8
ZNF540-201ENST00000316433 Q6ZSA8 131 aa3.8□□□□□ -1.8
ZNF540-201ENST00000316433 LYSTQ99698 3801 aa3.8□□□□□ -1.8
ZNF540-201ENST00000316433 PANO1I0J062 215 aa3.79□□□□□ -1.8
ZNF540-201ENST00000316433 RPS29P62273 56 aaKnown RBP3.79□□□□□ -1.8
ZNF540-201ENST00000316433 LCE2CQ5TA81 110 aa3.79□□□□□ -1.8
ZNF540-201ENST00000316433 PSORS1C2Q9UIG4 136 aa3.79□□□□□ -1.8
ZNF540-201ENST00000316433 NSD1Q96L73 2696 aaPredicted RBP3.79□□□□□ -1.8
ZNF540-201ENST00000316433 K7ERS5 55 aa3.78□□□□□ -1.8
ZNF540-201ENST00000316433 SACSQ9NZJ4 4579 aa3.78□□□□□ -1.8
ZNF540-201ENST00000316433 LCE2AQ5TA79 106 aaPredicted RBP3.77□□□□□ -1.81
ZNF540-201ENST00000316433 FASNP49327 2511 aaKnown RBP3.77□□□□□ -1.81
ZNF540-201ENST00000316433 UNC79Q9P2D8 2635 aa3.77□□□□□ -1.81
ZNF540-201ENST00000316433 IGKV2-30P06310 120 aa3.76□□□□□ -1.81
ZNF540-201ENST00000316433 KRTAP21-3Q3LHN1 58 aa3.76□□□□□ -1.81
ZNF540-201ENST00000316433 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.76□□□□□ -1.81
ZNF540-201ENST00000316433 FLG2Q5D862 2391 aaPredicted RBP3.76□□□□□ -1.81
ZNF540-201ENST00000316433 TENM1Q9UKZ4 2725 aa3.76□□□□□ -1.81
ZNF540-201ENST00000316433 HIVEP2P31629 2446 aa3.76□□□□□ -1.81
ZNF540-201ENST00000316433 TEP1Q99973 2627 aaKnown RBP3.75□□□□□ -1.81
ZNF540-201ENST00000316433 HELZ2Q9BYK8 2649 aaKnown RBP3.75□□□□□ -1.81
ZNF540-201ENST00000316433 CSMD3Q7Z407 3707 aa3.75□□□□□ -1.81
ZNF540-201ENST00000316433 PKHD1L1Q86WI1 4243 aa3.73□□□□□ -1.81
ZNF540-201ENST00000316433 A0A1B0GU33 70 aa3.73□□□□□ -1.81
ZNF540-201ENST00000316433 SPINK1P00995 79 aa3.73□□□□□ -1.81
ZNF540-201ENST00000316433 HECTD1Q9ULT8 2610 aa3.73□□□□□ -1.81
ZNF540-201ENST00000316433 TPRXLQ17RH7 258 aa3.72□□□□□ -1.81
ZNF540-201ENST00000316433 LORP23490 312 aaPredicted RBP3.72□□□□□ -1.81
ZNF540-201ENST00000316433 IGKV2D-30A0A075B6S6 120 aa3.71□□□□□ -1.82
ZNF540-201ENST00000316433 SRRM2Q9UQ35 2752 aaKnown RBP3.71□□□□□ -1.82
ZNF540-201ENST00000316433 NOTCH2Q04721 2471 aa3.7□□□□□ -1.82
ZNF540-201ENST00000316433 H1FX-AS1Q4G0G2 97 aa3.7□□□□□ -1.82
ZNF540-201ENST00000316433 SPINK6Q6UWN8 80 aa3.7□□□□□ -1.82
ZNF540-201ENST00000316433 FRAS1Q86XX4 4008 aa3.7□□□□□ -1.82
ZNF540-201ENST00000316433 ATRQ13535 2644 aa3.7□□□□□ -1.82
ZNF540-201ENST00000316433 ANAPC11Q9NYG5 84 aa3.69□□□□□ -1.82
ZNF540-201ENST00000316433 PLECQ15149 4684 aaKnown RBP3.69□□□□□ -1.82
ZNF540-201ENST00000316433 UBE2DNLQ8IWF7 75 aa3.69□□□□□ -1.82
ZNF540-201ENST00000316433 DNAH11Q96DT5 4516 aa3.69□□□□□ -1.82
ZNF540-201ENST00000316433 TYMSOSQ8TAI1 123 aa3.68□□□□□ -1.82
ZNF540-201ENST00000316433 BAHCC1Q9P281 2608 aa3.67□□□□□ -1.82
ZNF540-201ENST00000316433 PKD1L1Q8TDX9 2849 aa3.67□□□□□ -1.82
ZNF540-201ENST00000316433 PKHD1P08F94 4074 aa3.66□□□□□ -1.82
ZNF540-201ENST00000316433 MAST4O15021 2626 aa3.65□□□□□ -1.83
ZNF540-201ENST00000316433 C10orf95Q9H7T3 257 aa3.64□□□□□ -1.83
ZNF540-201ENST00000316433 TENM3Q9P273 2699 aa3.64□□□□□ -1.83
ZNF540-201ENST00000316433 CIRBP-AS1Q8TBR5 109 aa3.64□□□□□ -1.83
ZNF540-201ENST00000316433 DNAH5Q8TE73 4624 aa3.62□□□□□ -1.83
ZNF540-201ENST00000316433 Q8N1X5 172 aa3.62□□□□□ -1.83
ZNF540-201ENST00000316433 FBN1P35555 2871 aaKnown RBP3.61□□□□□ -1.83
ZNF540-201ENST00000316433 PKD1P98161 4303 aa3.61□□□□□ -1.83
ZNF540-201ENST00000316433 KRTAP1-4P0C5Y4 121 aa3.61□□□□□ -1.83
ZNF540-201ENST00000316433 KRTAP13-2Q52LG2 175 aa3.59□□□□□ -1.83
ZNF540-201ENST00000316433 RPL37P61927 97 aaKnown RBP3.59□□□□□ -1.84
ZNF540-201ENST00000316433 STARD9Q9P2P6 4700 aa3.59□□□□□ -1.84
ZNF540-201ENST00000316433 COX6B2Q6YFQ2 88 aa3.58□□□□□ -1.84
ZNF540-201ENST00000316433 FLNBO75369 2602 aaKnown RBP3.58□□□□□ -1.84
ZNF540-201ENST00000316433 STAB1Q9NY15 2570 aa3.57□□□□□ -1.84
ZNF540-201ENST00000316433 FAT2Q9NYQ8 4349 aa3.57□□□□□ -1.84
ZNF540-201ENST00000316433 FBN3Q75N90 2809 aa3.55□□□□□ -1.84
ZNF540-201ENST00000316433 NOTCH1P46531 2555 aa3.55□□□□□ -1.84
ZNF540-201ENST00000316433 MEGF8Q7Z7M0 2845 aa3.55□□□□□ -1.84
ZNF540-201ENST00000316433 APOBP04114 4563 aaKnown RBP3.54□□□□□ -1.84
ZNF540-201ENST00000316433 HSPG2P98160 4391 aa3.53□□□□□ -1.84
ZNF540-201ENST00000316433 KRTAP23-1A1A580 65 aa3.52□□□□□ -1.85
ZNF540-201ENST00000316433 TNXBP22105 4242 aa3.52□□□□□ -1.85
ZNF540-201ENST00000316433 NBEAL1Q6ZS30 2694 aa3.5□□□□□ -1.85
ZNF540-201ENST00000316433 COL7A1Q02388 2944 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms