RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 FRYLO94915 3013 aa9.48□□□□□ -0.89
SHANK1-201ENST00000293441 COL12A1Q99715 3063 aa9.47□□□□□ -0.89
SHANK1-201ENST00000293441 BOD1L1Q8NFC6 3051 aa9.46□□□□□ -0.9
SHANK1-201ENST00000293441 UTP20O75691 2785 aaKnown RBP9.45□□□□□ -0.9
SHANK1-201ENST00000293441 DMXL2Q8TDJ6 3036 aa9.44□□□□□ -0.9
SHANK1-201ENST00000293441 CFAP47Q6ZTR5 3102 aa9.44□□□□□ -0.9
SHANK1-201ENST00000293441 APCP25054 2843 aa9.42□□□□□ -0.9
SHANK1-201ENST00000293441 REV3LO60673 3130 aa9.4□□□□□ -0.91
SHANK1-201ENST00000293441 KRTAP25-1Q3LHN0 102 aa9.39□□□□□ -0.91
SHANK1-201ENST00000293441 ADGRG4Q8IZF6 3080 aa9.38□□□□□ -0.91
SHANK1-201ENST00000293441 EYSQ5T1H1 3165 aa9.38□□□□□ -0.91
SHANK1-201ENST00000293441 TNP1P09430 55 aa9.36□□□□□ -0.91
SHANK1-201ENST00000293441 KRTAP16-1A8MUX0 517 aa9.35□□□□□ -0.91
SHANK1-201ENST00000293441 HIVEP1P15822 2718 aa9.34□□□□□ -0.91
SHANK1-201ENST00000293441 A0A1B0GVY2 172 aa9.34□□□□□ -0.91
SHANK1-201ENST00000293441 SPEGQ15772 3267 aa9.32□□□□□ -0.92
SHANK1-201ENST00000293441 USP34Q70CQ2 3546 aa9.31□□□□□ -0.92
SHANK1-201ENST00000293441 XP32Q5T750 250 aa9.31□□□□□ -0.92
SHANK1-201ENST00000293441 ASH1LQ9NR48 2969 aaKnown RBP9.3□□□□□ -0.92
SHANK1-201ENST00000293441 A6NN06 94 aa9.3□□□□□ -0.92
SHANK1-201ENST00000293441 FLNCQ14315 2725 aa9.29□□□□□ -0.92
SHANK1-201ENST00000293441 KRTAP1-4P0C5Y4 121 aa9.28□□□□□ -0.92
SHANK1-201ENST00000293441 KRTAP10-8P60410 259 aa9.22□□□□□ -0.93
SHANK1-201ENST00000293441 TNRC18O15417 2968 aaPredicted RBP9.19□□□□□ -0.94
SHANK1-201ENST00000293441 NBEAQ8NFP9 2946 aa9.19□□□□□ -0.94
SHANK1-201ENST00000293441 C10orf95Q9H7T3 257 aa9.18□□□□□ -0.94
SHANK1-201ENST00000293441 ZZEF1O43149 2961 aa9.17□□□□□ -0.94
SHANK1-201ENST00000293441 TENM4Q6N022 2769 aa9.16□□□□□ -0.94
SHANK1-201ENST00000293441 MYO15AQ9UKN7 3530 aa9.14□□□□□ -0.95
SHANK1-201ENST00000293441 CELSR2Q9HCU4 2923 aa9.13□□□□□ -0.95
SHANK1-201ENST00000293441 TPRXLQ17RH7 258 aa9.12□□□□□ -0.95
SHANK1-201ENST00000293441 KRTAP10-10P60014 251 aa9.08□□□□□ -0.96
SHANK1-201ENST00000293441 NDUFAF8A1L188 74 aa9.07□□□□□ -0.96
SHANK1-201ENST00000293441 DMXL1Q9Y485 3027 aa9.06□□□□□ -0.96
SHANK1-201ENST00000293441 DCHS2Q6V1P9 2916 aa9.02□□□□□ -0.97
SHANK1-201ENST00000293441 NIPBLQ6KC79 2804 aaeCLIP8.98□□□□□ -0.97
SHANK1-201ENST00000293441 KRTAP13-3Q3SY46 172 aa8.96□□□□□ -0.97
SHANK1-201ENST00000293441 PP632Q6XCG6 107 aa8.93□□□□□ -0.98
SHANK1-201ENST00000293441 ASPMQ8IZT6 3477 aa8.92□□□□□ -0.98
SHANK1-201ENST00000293441 H0YAA0 97 aa8.91□□□□□ -0.98
SHANK1-201ENST00000293441 HRNRQ86YZ3 2850 aaPredicted RBP8.9□□□□□ -0.99
SHANK1-201ENST00000293441 LOC400499M0QZD8 3231 aa8.89□□□□□ -0.99
SHANK1-201ENST00000293441 ZANQ9Y493 2812 aa8.89□□□□□ -0.99
SHANK1-201ENST00000293441 PRO2289Q9P1D8 64 aa8.87□□□□□ -0.99
SHANK1-201ENST00000293441 WDFY3Q8IZQ1 3526 aa8.83□□□□□ -1
SHANK1-201ENST00000293441 TENM1Q9UKZ4 2725 aa8.82□□□□□ -1
SHANK1-201ENST00000293441 P0C880 135 aa8.81□□□□□ -1
SHANK1-201ENST00000293441 NF1P21359 2839 aa8.79□□□□□ -1
SHANK1-201ENST00000293441 CELSR1Q9NYQ6 3014 aa8.79□□□□□ -1
SHANK1-201ENST00000293441 FBN2P35556 2912 aa8.78□□□□□ -1
SHANK1-201ENST00000293441 TENM2Q9NT68 2774 aa8.78□□□□□ -1
SHANK1-201ENST00000293441 NBPF19A0A087WUL8 3843 aa8.72□□□□□ -1.01
SHANK1-201ENST00000293441 RELNP78509 3460 aa8.64□□□□□ -1.03
SHANK1-201ENST00000293441 TENM3Q9P273 2699 aa8.58□□□□□ -1.04
SHANK1-201ENST00000293441 LAMA5O15230 3695 aa8.58□□□□□ -1.04
SHANK1-201ENST00000293441 ZFHX4Q86UP3 3567 aa8.53□□□□□ -1.04
SHANK1-201ENST00000293441 DMDP11532 3685 aa8.51□□□□□ -1.05
SHANK1-201ENST00000293441 TGP01266 2768 aa8.51□□□□□ -1.05
SHANK1-201ENST00000293441 DCHS1Q96JQ0 3298 aa8.47□□□□□ -1.05
SHANK1-201ENST00000293441 KRTAP12-2P59991 146 aa8.47□□□□□ -1.05
SHANK1-201ENST00000293441 PKD1L1Q8TDX9 2849 aa8.45□□□□□ -1.06
SHANK1-201ENST00000293441 MXRA5Q9NR99 2828 aa8.43□□□□□ -1.06
SHANK1-201ENST00000293441 VWFP04275 2813 aa8.35□□□□□ -1.07
SHANK1-201ENST00000293441 CSMD1Q96PZ7 3565 aa8.34□□□□□ -1.08
SHANK1-201ENST00000293441 PDZD2O15018 2839 aa8.3□□□□□ -1.08
SHANK1-201ENST00000293441 KRTAP13-4Q3LI77 160 aa8.29□□□□□ -1.08
SHANK1-201ENST00000293441 KRTAP12-1P59990 96 aa8.26□□□□□ -1.09
SHANK1-201ENST00000293441 ZFHX3Q15911 3703 aa8.24□□□□□ -1.09
SHANK1-201ENST00000293441 KRTAP3-1Q9BYR8 98 aa8.22□□□□□ -1.09
SHANK1-201ENST00000293441 ANK3Q12955 4377 aaKnown RBP8.18□□□□□ -1.1
SHANK1-201ENST00000293441 MUC3AQ02505 3323 aa8.17□□□□□ -1.1
SHANK1-201ENST00000293441 SMG1Q96Q15 3661 aaKnown RBP8.12□□□□□ -1.11
SHANK1-201ENST00000293441 KRTAP15-1Q3LI76 137 aa8.09□□□□□ -1.11
SHANK1-201ENST00000293441 SPENQ96T58 3664 aaKnown RBP8.06□□□□□ -1.12
SHANK1-201ENST00000293441 CSMD2Q7Z408 3487 aa8.05□□□□□ -1.12
SHANK1-201ENST00000293441 SVEP1Q4LDE5 3571 aa8.04□□□□□ -1.12
SHANK1-201ENST00000293441 OTOGQ6ZRI0 2925 aa8.02□□□□□ -1.12
SHANK1-201ENST00000293441 MT1HL1P0DM35 61 aa8□□□□□ -1.13
SHANK1-201ENST00000293441 FBN1P35555 2871 aaKnown RBP8□□□□□ -1.13
SHANK1-201ENST00000293441 KRTAP10-6P60371 365 aaPredicted RBP7.95□□□□□ -1.14
SHANK1-201ENST00000293441 KRTAP4-5Q9BYR2 181 aa7.9□□□□□ -1.14
SHANK1-201ENST00000293441 CUBNO60494 3623 aa7.89□□□□□ -1.15
SHANK1-201ENST00000293441 FBN3Q75N90 2809 aa7.87□□□□□ -1.15
SHANK1-201ENST00000293441 TRRAPQ9Y4A5 3859 aa7.87□□□□□ -1.15
SHANK1-201ENST00000293441 MEGF8Q7Z7M0 2845 aa7.82□□□□□ -1.16
SHANK1-201ENST00000293441 HUWE1Q7Z6Z7 4374 aaKnown RBP7.82□□□□□ -1.16
SHANK1-201ENST00000293441 CRCT1Q9UGL9 99 aa7.81□□□□□ -1.16
SHANK1-201ENST00000293441 BSNQ9UPA5 3926 aa7.77□□□□□ -1.17
SHANK1-201ENST00000293441 SRRM2Q9UQ35 2752 aaKnown RBP7.76□□□□□ -1.17
SHANK1-201ENST00000293441 KRTAP10-12P60413 245 aa7.74□□□□□ -1.17
SHANK1-201ENST00000293441 COL7A1Q02388 2944 aa7.72□□□□□ -1.17
SHANK1-201ENST00000293441 KRTAP3-3Q9BYR6 98 aa7.7□□□□□ -1.18
SHANK1-201ENST00000293441 KRTAP10-4P60372 401 aaPredicted RBP7.7□□□□□ -1.18
SHANK1-201ENST00000293441 ALMS1Q8TCU4 4167 aa7.66□□□□□ -1.18
SHANK1-201ENST00000293441 KRTAP3-2Q9BYR7 98 aa7.65□□□□□ -1.18
SHANK1-201ENST00000293441 VPS13CQ709C8 3753 aa7.55□□□□□ -1.2
SHANK1-201ENST00000293441 KRTAP12-3P60328 96 aa7.47□□□□□ -1.21
SHANK1-201ENST00000293441 LCE3AQ5TA76 89 aa7.43□□□□□ -1.22
SHANK1-201ENST00000293441 INE1O15225 51 aa7.39□□□□□ -1.23
SHANK1-201ENST00000293441 LORP23490 312 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms