RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KRTAP10-1P60331 282 aa11.84□□□□□ -0.51
VPS53-201ENST00000291074 A0A1B0GVX0 72 aa11.84□□□□□ -0.51
VPS53-201ENST00000291074 ASB16-AS1Q495Z4 193 aa11.83□□□□□ -0.51
VPS53-201ENST00000291074 LRP1BQ9NZR2 4599 aa11.83□□□□□ -0.51
VPS53-201ENST00000291074 A0A087X002 238 aa11.83□□□□□ -0.52
VPS53-201ENST00000291074 NOTCH2NLQ7Z3S9 236 aa11.83□□□□□ -0.52
VPS53-201ENST00000291074 SPINK6Q6UWN8 80 aa11.82□□□□□ -0.52
VPS53-201ENST00000291074 CDK2AP2O75956 126 aa11.81□□□□□ -0.52
VPS53-201ENST00000291074 A8MU10 97 aa11.79□□□□□ -0.52
VPS53-201ENST00000291074 H3BPC8 53 aa11.78□□□□□ -0.52
VPS53-201ENST00000291074 Q6ZSA8 131 aa11.78□□□□□ -0.52
VPS53-201ENST00000291074 CYP4F30PQ9H0H9 118 aa11.77□□□□□ -0.52
VPS53-201ENST00000291074 NDUFS5O43920 106 aa11.76□□□□□ -0.53
VPS53-201ENST00000291074 PMAIP1Q13794 54 aa11.75□□□□□ -0.53
VPS53-201ENST00000291074 Q1T7F1 81 aa11.74□□□□□ -0.53
VPS53-201ENST00000291074 MRPL34Q9BQ48 92 aaKnown RBP11.72□□□□□ -0.53
VPS53-201ENST00000291074 SSBP3-AS1Q7Z2R9 100 aa11.71□□□□□ -0.53
VPS53-201ENST00000291074 TP53AIP1Q9HCN2 124 aa11.71□□□□□ -0.53
VPS53-201ENST00000291074 KRTAP13-2Q52LG2 175 aa11.7□□□□□ -0.54
VPS53-201ENST00000291074 A8MUN3 132 aa11.7□□□□□ -0.54
VPS53-201ENST00000291074 CD164Q04900 197 aa11.69□□□□□ -0.54
VPS53-201ENST00000291074 PCOTHQ58A44 107 aa11.67□□□□□ -0.54
VPS53-201ENST00000291074 SPANXA2-OT1Q8N9U9 137 aa11.67□□□□□ -0.54
VPS53-201ENST00000291074 VPS13BQ7Z7G8 4022 aa11.66□□□□□ -0.54
VPS53-201ENST00000291074 PKHD1P08F94 4074 aa11.62□□□□□ -0.55
VPS53-201ENST00000291074 KRTAP1-4P0C5Y4 121 aa11.6□□□□□ -0.55
VPS53-201ENST00000291074 SACSQ9NZJ4 4579 aa11.6□□□□□ -0.55
VPS53-201ENST00000291074 Q5W150 140 aa11.57□□□□□ -0.56
VPS53-201ENST00000291074 Q5VV11 94 aa11.56□□□□□ -0.56
VPS53-201ENST00000291074 IGLV7-46A0A075B6I9 117 aa11.56□□□□□ -0.56
VPS53-201ENST00000291074 C8orf87E5RJ46 101 aa11.51□□□□□ -0.57
VPS53-201ENST00000291074 KRTAP13-3Q3SY46 172 aa11.5□□□□□ -0.57
VPS53-201ENST00000291074 CHKB-CPT1BH3BT56 60 aa11.49□□□□□ -0.57
VPS53-201ENST00000291074 LINC00313P59037 77 aa11.49□□□□□ -0.57
VPS53-201ENST00000291074 COA5Q86WW8 74 aa11.49□□□□□ -0.57
VPS53-201ENST00000291074 PLA2G1BP04054 148 aaKnown RBP11.48□□□□□ -0.57
VPS53-201ENST00000291074 Q8N9P0 234 aaPredicted RBP11.46□□□□□ -0.58
VPS53-201ENST00000291074 SPTSSBQ8NFR3 76 aa11.46□□□□□ -0.58
VPS53-201ENST00000291074 PRR15LQ9BU68 103 aa11.45□□□□□ -0.58
VPS53-201ENST00000291074 RETNLBQ9BQ08 111 aa11.44□□□□□ -0.58
VPS53-201ENST00000291074 LOC101927531A0A1B0GV80 90 aa11.43□□□□□ -0.58
VPS53-201ENST00000291074 DYNC1H1Q14204 4646 aaKnown RBP11.43□□□□□ -0.58
VPS53-201ENST00000291074 TYMSOSQ8TAI1 123 aa11.43□□□□□ -0.58
VPS53-201ENST00000291074 LIMD2Q9BT23 127 aa11.41□□□□□ -0.58
VPS53-201ENST00000291074 SMR3BP02814 79 aaPredicted RBP11.4□□□□□ -0.59
VPS53-201ENST00000291074 LCA10Q71F78 164 aa11.38□□□□□ -0.59
VPS53-201ENST00000291074 C4orf48Q5BLP8 95 aa11.38□□□□□ -0.59
VPS53-201ENST00000291074 KRTAP16-1A8MUX0 517 aa11.37□□□□□ -0.59
VPS53-201ENST00000291074 HRES1P13985 223 aa11.36□□□□□ -0.59
VPS53-201ENST00000291074 PRR26Q8N8Z3 221 aa11.36□□□□□ -0.59
VPS53-201ENST00000291074 FAT1Q14517 4588 aa11.33□□□□□ -0.6
VPS53-201ENST00000291074 FAM229AH3BQW9 127 aa11.32□□□□□ -0.6
VPS53-201ENST00000291074 A6NED7 52 aa11.32□□□□□ -0.6
VPS53-201ENST00000291074 KTN1-AS1Q86SY8 53 aa11.32□□□□□ -0.6
VPS53-201ENST00000291074 SPINK1P00995 79 aa11.31□□□□□ -0.6
VPS53-201ENST00000291074 RBM12B-AS1Q9P1G2 102 aa11.31□□□□□ -0.6
VPS53-201ENST00000291074 A0A1B0GVY2 172 aa11.29□□□□□ -0.6
VPS53-201ENST00000291074 APOBP04114 4563 aaKnown RBP11.29□□□□□ -0.6
VPS53-201ENST00000291074 LINC00304Q8N9R0 145 aa11.27□□□□□ -0.61
VPS53-201ENST00000291074 SPAG11AQ6PDA7 123 aa11.25□□□□□ -0.61
VPS53-201ENST00000291074 IGKV2-30P06310 120 aa11.24□□□□□ -0.61
VPS53-201ENST00000291074 Q75L30 129 aa11.23□□□□□ -0.61
VPS53-201ENST00000291074 ATP11AUNQ6ZP68 121 aa11.22□□□□□ -0.61
VPS53-201ENST00000291074 RYR2Q92736 4967 aa11.21□□□□□ -0.61
VPS53-201ENST00000291074 A6NN06 94 aa11.21□□□□□ -0.61
VPS53-201ENST00000291074 KRTAP10-4P60372 401 aaPredicted RBP11.19□□□□□ -0.62
VPS53-201ENST00000291074 KMT2CQ8NEZ4 4911 aaKnown RBP11.18□□□□□ -0.62
VPS53-201ENST00000291074 IGKV2D-30A0A075B6S6 120 aa11.18□□□□□ -0.62
VPS53-201ENST00000291074 DMAC1Q96GE9 116 aa11.15□□□□□ -0.62
VPS53-201ENST00000291074 ACYP2P14621 99 aa11.14□□□□□ -0.63
VPS53-201ENST00000291074 LINC01558Q9Y6Z2 57 aa11.14□□□□□ -0.63
VPS53-201ENST00000291074 CDC42SE1Q9NRR8 79 aa11.13□□□□□ -0.63
VPS53-201ENST00000291074 RPS29P62273 56 aaKnown RBP11.12□□□□□ -0.63
VPS53-201ENST00000291074 SPINK7P58062 85 aa11.12□□□□□ -0.63
VPS53-201ENST00000291074 PKHD1L1Q86WI1 4243 aa11.12□□□□□ -0.63
VPS53-201ENST00000291074 C9orf92A6NGG3 77 aa11.05□□□□□ -0.64
VPS53-201ENST00000291074 C7orf65Q6ZTY9 151 aa11.03□□□□□ -0.64
VPS53-201ENST00000291074 PRAC1Q96KF2 57 aa10.95□□□□□ -0.66
VPS53-201ENST00000291074 FLG2Q5D862 2391 aaPredicted RBP10.93□□□□□ -0.66
VPS53-201ENST00000291074 Q8N1X5 172 aa10.92□□□□□ -0.66
VPS53-201ENST00000291074 LRP1Q07954 4544 aaKnown RBP10.91□□□□□ -0.66
VPS53-201ENST00000291074 A8MUU9 505 aa10.9□□□□□ -0.67
VPS53-201ENST00000291074 ADM2Q7Z4H4 148 aa10.9□□□□□ -0.67
VPS53-201ENST00000291074 C20orf166-AS1Q96NR2 134 aa10.9□□□□□ -0.67
VPS53-201ENST00000291074 HSPG2P98160 4391 aa10.85□□□□□ -0.67
VPS53-201ENST00000291074 RYR3Q15413 4870 aa10.83□□□□□ -0.68
VPS53-201ENST00000291074 A0A1B0GU69 56 aa10.81□□□□□ -0.68
VPS53-201ENST00000291074 TNXBP22105 4242 aa10.81□□□□□ -0.68
VPS53-201ENST00000291074 FAT3Q8TDW7 4589 aa10.8□□□□□ -0.68
VPS53-201ENST00000291074 Q5VSD8 79 aa10.79□□□□□ -0.68
VPS53-201ENST00000291074 KRTAP10-8P60410 259 aa10.72□□□□□ -0.69
VPS53-201ENST00000291074 KRTAP17-1Q9BYP8 105 aa10.72□□□□□ -0.69
VPS53-201ENST00000291074 DMBT1Q9UGM3 2413 aaPredicted RBP10.7□□□□□ -0.7
VPS53-201ENST00000291074 RYR1P21817 5038 aa10.69□□□□□ -0.7
VPS53-201ENST00000291074 KRTAP3-1Q9BYR8 98 aa10.69□□□□□ -0.7
VPS53-201ENST00000291074 KIAA1109Q2LD37 5005 aa10.63□□□□□ -0.71
VPS53-201ENST00000291074 LINC01554Q52M75 96 aa10.6□□□□□ -0.71
VPS53-201ENST00000291074 MYCBP2O75592 4640 aa10.6□□□□□ -0.71
VPS53-201ENST00000291074 UQCR11O14957 56 aa10.56□□□□□ -0.72
VPS53-201ENST00000291074 SPATA8Q6RVD6 105 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms