RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 MRPL34Q9BQ48 92 aaKnown RBP5.5□□□□□ -1.53
PDGFC-201ENST00000274071 A8MUU9 505 aa5.49□□□□□ -1.53
PDGFC-201ENST00000274071 NOTCH2NLQ7Z3S9 236 aa5.47□□□□□ -1.53
PDGFC-201ENST00000274071 A0A1B0GVX0 72 aa5.46□□□□□ -1.54
PDGFC-201ENST00000274071 SPRR1BP22528 89 aa5.46□□□□□ -1.54
PDGFC-201ENST00000274071 KRTAP13-3Q3SY46 172 aa5.46□□□□□ -1.54
PDGFC-201ENST00000274071 LINC00483Q53H64 154 aa5.46□□□□□ -1.54
PDGFC-201ENST00000274071 IGLV7-43P04211 117 aa5.45□□□□□ -1.54
PDGFC-201ENST00000274071 DNAH10OSP0CZ25 163 aa5.45□□□□□ -1.54
PDGFC-201ENST00000274071 H3BNG1 76 aa5.45□□□□□ -1.54
PDGFC-201ENST00000274071 LINC00304Q8N9R0 145 aa5.44□□□□□ -1.54
PDGFC-201ENST00000274071 HUWE1Q7Z6Z7 4374 aaKnown RBP5.43□□□□□ -1.54
PDGFC-201ENST00000274071 FLG2Q5D862 2391 aaPredicted RBP5.42□□□□□ -1.54
PDGFC-201ENST00000274071 CASC10Q5T4H9 136 aa5.42□□□□□ -1.54
PDGFC-201ENST00000274071 LINC01556Q5JQF7 62 aa5.4□□□□□ -1.54
PDGFC-201ENST00000274071 CRIPTQ9P021 101 aa5.4□□□□□ -1.55
PDGFC-201ENST00000274071 COL7A1Q02388 2944 aa5.39□□□□□ -1.55
PDGFC-201ENST00000274071 CDK2AP2O75956 126 aa5.39□□□□□ -1.55
PDGFC-201ENST00000274071 KRTAP11-1Q8IUC1 163 aa5.38□□□□□ -1.55
PDGFC-201ENST00000274071 NDUFAF8A1L188 74 aa5.36□□□□□ -1.55
PDGFC-201ENST00000274071 LYSTQ99698 3801 aa5.35□□□□□ -1.55
PDGFC-201ENST00000274071 DNHD1Q96M86 4753 aa5.35□□□□□ -1.55
PDGFC-201ENST00000274071 KRTAP16-1A8MUX0 517 aa5.35□□□□□ -1.55
PDGFC-201ENST00000274071 IGLV9-49A0A0B4J1Y8 123 aa5.34□□□□□ -1.55
PDGFC-201ENST00000274071 H0YAA0 97 aa5.34□□□□□ -1.55
PDGFC-201ENST00000274071 DNAH9Q9NYC9 4486 aa5.34□□□□□ -1.55
PDGFC-201ENST00000274071 STAB2Q8WWQ8 2551 aa5.33□□□□□ -1.56
PDGFC-201ENST00000274071 C20orf166-AS1Q96NR2 134 aa5.33□□□□□ -1.56
PDGFC-201ENST00000274071 DNAH1Q9P2D7 4330 aa5.33□□□□□ -1.56
PDGFC-201ENST00000274071 Q6ZSA8 131 aa5.32□□□□□ -1.56
PDGFC-201ENST00000274071 CHTF8P0CG12 524 aa5.31□□□□□ -1.56
PDGFC-201ENST00000274071 SSBP3-AS1Q7Z2R9 100 aa5.31□□□□□ -1.56
PDGFC-201ENST00000274071 SPINT4Q6UDR6 99 aa5.29□□□□□ -1.56
PDGFC-201ENST00000274071 LY6G6CO95867 125 aa5.29□□□□□ -1.56
PDGFC-201ENST00000274071 A0A087WTM6 91 aa5.28□□□□□ -1.56
PDGFC-201ENST00000274071 IGKV2-30P06310 120 aa5.28□□□□□ -1.56
PDGFC-201ENST00000274071 DNAH10Q8IVF4 4471 aa5.28□□□□□ -1.56
PDGFC-201ENST00000274071 DNAH7Q8WXX0 4024 aa5.27□□□□□ -1.57
PDGFC-201ENST00000274071 PANO1I0J062 215 aa5.27□□□□□ -1.57
PDGFC-201ENST00000274071 SPINK6Q6UWN8 80 aa5.27□□□□□ -1.57
PDGFC-201ENST00000274071 DYNC2H1Q8NCM8 4307 aaKnown RBP5.26□□□□□ -1.57
PDGFC-201ENST00000274071 PLECQ15149 4684 aaKnown RBP5.26□□□□□ -1.57
PDGFC-201ENST00000274071 NUPR2A6NF83 97 aa5.25□□□□□ -1.57
PDGFC-201ENST00000274071 SPINK1P00995 79 aa5.25□□□□□ -1.57
PDGFC-201ENST00000274071 FAM229AH3BQW9 127 aa5.25□□□□□ -1.57
PDGFC-201ENST00000274071 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
PDGFC-201ENST00000274071 PSORS1C2Q9UIG4 136 aa5.25□□□□□ -1.57
PDGFC-201ENST00000274071 MEGF8Q7Z7M0 2845 aa5.24□□□□□ -1.57
PDGFC-201ENST00000274071 KRTAP13-1Q8IUC0 172 aa5.24□□□□□ -1.57
PDGFC-201ENST00000274071 PRKDCP78527 4128 aaKnown RBP5.23□□□□□ -1.57
PDGFC-201ENST00000274071 APLNQ9ULZ1 77 aa5.22□□□□□ -1.57
PDGFC-201ENST00000274071 UBE2DNLQ8IWF7 75 aa5.21□□□□□ -1.58
PDGFC-201ENST00000274071 KRTAP1-5Q9BYS1 174 aa5.21□□□□□ -1.58
PDGFC-201ENST00000274071 STARD9Q9P2P6 4700 aa5.2□□□□□ -1.58
PDGFC-201ENST00000274071 A0A1B0GU33 70 aa5.19□□□□□ -1.58
PDGFC-201ENST00000274071 WWC2-AS2Q96NR7 200 aa5.19□□□□□ -1.58
PDGFC-201ENST00000274071 IGKV2D-30A0A075B6S6 120 aa5.19□□□□□ -1.58
PDGFC-201ENST00000274071 ANAPC11Q9NYG5 84 aa5.18□□□□□ -1.58
PDGFC-201ENST00000274071 C14orf177Q52M58 125 aa5.18□□□□□ -1.58
PDGFC-201ENST00000274071 TGP01266 2768 aa5.18□□□□□ -1.58
PDGFC-201ENST00000274071 TPRXLQ17RH7 258 aa5.17□□□□□ -1.58
PDGFC-201ENST00000274071 TYMSOSQ8TAI1 123 aa5.17□□□□□ -1.58
PDGFC-201ENST00000274071 FRAS1Q86XX4 4008 aa5.16□□□□□ -1.58
PDGFC-201ENST00000274071 VPS13DQ5THJ4 4388 aa5.14□□□□□ -1.59
PDGFC-201ENST00000274071 K7ERS5 55 aa5.14□□□□□ -1.59
PDGFC-201ENST00000274071 H1FX-AS1Q4G0G2 97 aa5.14□□□□□ -1.59
PDGFC-201ENST00000274071 FBN3Q75N90 2809 aa5.13□□□□□ -1.59
PDGFC-201ENST00000274071 NBDYA0A0U1RRE5 68 aa5.13□□□□□ -1.59
PDGFC-201ENST00000274071 KMT2AQ03164 3969 aa5.12□□□□□ -1.59
PDGFC-201ENST00000274071 Q8N1X5 172 aa5.12□□□□□ -1.59
PDGFC-201ENST00000274071 LUZP6Q538Z0 58 aa5.11□□□□□ -1.59
PDGFC-201ENST00000274071 DNAH8Q96JB1 4490 aa5.1□□□□□ -1.59
PDGFC-201ENST00000274071 DNAH2Q9P225 4427 aa5.09□□□□□ -1.59
PDGFC-201ENST00000274071 HECTD4Q9Y4D8 3996 aa5.09□□□□□ -1.59
PDGFC-201ENST00000274071 Q6ZRN7 208 aaPredicted RBP5.08□□□□□ -1.6
PDGFC-201ENST00000274071 C10orf95Q9H7T3 257 aa5.08□□□□□ -1.6
PDGFC-201ENST00000274071 CIRBP-AS1Q8TBR5 109 aa5.07□□□□□ -1.6
PDGFC-201ENST00000274071 DNAH17Q9UFH2 4485 aa5.05□□□□□ -1.6
PDGFC-201ENST00000274071 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.04□□□□□ -1.6
PDGFC-201ENST00000274071 COX6B2Q6YFQ2 88 aa5.02□□□□□ -1.61
PDGFC-201ENST00000274071 RPL37P61927 97 aaKnown RBP4.98□□□□□ -1.61
PDGFC-201ENST00000274071 SPACA4Q8TDM5 124 aa4.98□□□□□ -1.61
PDGFC-201ENST00000274071 DMBT1Q9UGM3 2413 aaPredicted RBP4.98□□□□□ -1.61
PDGFC-201ENST00000274071 DNAH6Q9C0G6 4158 aa4.97□□□□□ -1.61
PDGFC-201ENST00000274071 HYDINQ4G0P3 5121 aa4.97□□□□□ -1.61
PDGFC-201ENST00000274071 KRTAP21-3Q3LHN1 58 aa4.95□□□□□ -1.62
PDGFC-201ENST00000274071 DNAH5Q8TE73 4624 aa4.94□□□□□ -1.62
PDGFC-201ENST00000274071 KRTAP3-1Q9BYR8 98 aa4.94□□□□□ -1.62
PDGFC-201ENST00000274071 DNAH11Q96DT5 4516 aa4.93□□□□□ -1.62
PDGFC-201ENST00000274071 A0A0D9SG42 100 aa4.9□□□□□ -1.63
PDGFC-201ENST00000274071 PKD1P98161 4303 aa4.89□□□□□ -1.63
PDGFC-201ENST00000274071 FAT2Q9NYQ8 4349 aa4.89□□□□□ -1.63
PDGFC-201ENST00000274071 KRTAP13-4Q3LI77 160 aa4.88□□□□□ -1.63
PDGFC-201ENST00000274071 KRTAP10-2P60368 255 aa4.87□□□□□ -1.63
PDGFC-201ENST00000274071 SEC61BP60468 96 aaKnown RBP4.87□□□□□ -1.63
PDGFC-201ENST00000274071 SACSQ9NZJ4 4579 aa4.84□□□□□ -1.63
PDGFC-201ENST00000274071 LRP1BQ9NZR2 4599 aa4.83□□□□□ -1.64
PDGFC-201ENST00000274071 KRTAP10-6P60371 365 aaPredicted RBP4.83□□□□□ -1.64
PDGFC-201ENST00000274071 KRTAP13-2Q52LG2 175 aa4.82□□□□□ -1.64
PDGFC-201ENST00000274071 PKHD1P08F94 4074 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms