RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C1orf195Q5TG92 126 aa9.44□□□□□ -0.9
USP4-201ENST00000265560 SNURFQ9Y675 71 aa9.43□□□□□ -0.9
USP4-201ENST00000265560 OCR1Q9BZK8 76 aa9.42□□□□□ -0.9
USP4-201ENST00000265560 TRAV7A0A075B6U4 112 aa9.42□□□□□ -0.9
USP4-201ENST00000265560 MMP24-AS1A0A0U1RRL7 71 aa9.42□□□□□ -0.9
USP4-201ENST00000265560 A0A1B0GVX0 72 aa9.42□□□□□ -0.9
USP4-201ENST00000265560 KRTAP29-1A8MX34 341 aaPredicted RBP9.4□□□□□ -0.9
USP4-201ENST00000265560 C8orf17Q9NRJ1 99 aa9.39□□□□□ -0.91
USP4-201ENST00000265560 hDV103S1A0JD37 113 aa9.39□□□□□ -0.91
USP4-201ENST00000265560 RETNLBQ9BQ08 111 aa9.39□□□□□ -0.91
USP4-201ENST00000265560 TNXBP22105 4242 aa9.38□□□□□ -0.91
USP4-201ENST00000265560 SPINK1P00995 79 aa9.37□□□□□ -0.91
USP4-201ENST00000265560 NDUFS5O43920 106 aa9.36□□□□□ -0.91
USP4-201ENST00000265560 LIMD2Q9BT23 127 aa9.35□□□□□ -0.91
USP4-201ENST00000265560 Q8N1X5 172 aa9.34□□□□□ -0.92
USP4-201ENST00000265560 FAT3Q8TDW7 4589 aa9.33□□□□□ -0.92
USP4-201ENST00000265560 KRTAP4-5Q9BYR2 181 aa9.33□□□□□ -0.92
USP4-201ENST00000265560 SMIM20Q8N5G0 67 aa9.33□□□□□ -0.92
USP4-201ENST00000265560 ASB16-AS1Q495Z4 193 aa9.31□□□□□ -0.92
USP4-201ENST00000265560 Q5XG85 94 aa9.3□□□□□ -0.92
USP4-201ENST00000265560 TMEM254Q8TBM7 123 aa9.3□□□□□ -0.92
USP4-201ENST00000265560 LINC00313P59037 77 aa9.27□□□□□ -0.92
USP4-201ENST00000265560 SPAG11AQ6PDA7 123 aa9.27□□□□□ -0.93
USP4-201ENST00000265560 MRPL34Q9BQ48 92 aaKnown RBP9.26□□□□□ -0.93
USP4-201ENST00000265560 C9orf92A6NGG3 77 aa9.23□□□□□ -0.93
USP4-201ENST00000265560 KRTAP10-8P60410 259 aa9.23□□□□□ -0.93
USP4-201ENST00000265560 LINC00208Q96KT6 92 aa9.22□□□□□ -0.93
USP4-201ENST00000265560 ABCA13Q86UQ4 5058 aa9.21□□□□□ -0.94
USP4-201ENST00000265560 A0A0U1RQV1 116 aa9.2□□□□□ -0.94
USP4-201ENST00000265560 H0Y9P7 68 aa9.2□□□□□ -0.94
USP4-201ENST00000265560 KLKP1Q107X0 134 aa9.2□□□□□ -0.94
USP4-201ENST00000265560 H7BZZ5 65 aa9.19□□□□□ -0.94
USP4-201ENST00000265560 C5orf47Q569G3 176 aa9.18□□□□□ -0.94
USP4-201ENST00000265560 Q5W150 140 aa9.18□□□□□ -0.94
USP4-201ENST00000265560 MP68P56378 58 aa9.16□□□□□ -0.94
USP4-201ENST00000265560 RPS29P62273 56 aaKnown RBP9.16□□□□□ -0.94
USP4-201ENST00000265560 C8orf87E5RJ46 101 aa9.16□□□□□ -0.94
USP4-201ENST00000265560 TRAV22A0A0B4J277 110 aa9.15□□□□□ -0.94
USP4-201ENST00000265560 MT1HL1P0DM35 61 aa9.15□□□□□ -0.94
USP4-201ENST00000265560 KRTAP16-1A8MUX0 517 aa9.14□□□□□ -0.95
USP4-201ENST00000265560 PRR4Q16378 134 aa9.13□□□□□ -0.95
USP4-201ENST00000265560 C1orf64Q8NEQ6 169 aa9.13□□□□□ -0.95
USP4-201ENST00000265560 HERC2O95714 4834 aa9.12□□□□□ -0.95
USP4-201ENST00000265560 TP53AIP1Q9HCN2 124 aa9.1□□□□□ -0.95
USP4-201ENST00000265560 BIRC6Q9NR09 4857 aa9.1□□□□□ -0.95
USP4-201ENST00000265560 ZCCHC13Q8WW36 166 aaKnown RBP9.09□□□□□ -0.95
USP4-201ENST00000265560 PCOTHQ58A44 107 aa9.09□□□□□ -0.95
USP4-201ENST00000265560 Q8N9P0 234 aaPredicted RBP9.07□□□□□ -0.96
USP4-201ENST00000265560 TMEM258P61165 79 aa9.06□□□□□ -0.96
USP4-201ENST00000265560 FAM236DA0A1B0GTK5 79 aa9.03□□□□□ -0.96
USP4-201ENST00000265560 FAM236CP0DP71 79 aa9.03□□□□□ -0.96
USP4-201ENST00000265560 KRTAP13-3Q3SY46 172 aa9.01□□□□□ -0.97
USP4-201ENST00000265560 NDUFC1O43677 76 aa9.01□□□□□ -0.97
USP4-201ENST00000265560 LPAP08519 4548 aa9□□□□□ -0.97
USP4-201ENST00000265560 IGLV7-46A0A075B6I9 117 aa8.98□□□□□ -0.97
USP4-201ENST00000265560 IGKV2D-30A0A075B6S6 120 aa8.97□□□□□ -0.97
USP4-201ENST00000265560 IGKV2-30P06310 120 aa8.97□□□□□ -0.97
USP4-201ENST00000265560 H3BPC8 53 aa8.94□□□□□ -0.98
USP4-201ENST00000265560 PCLOQ9Y6V0 5065 aa8.93□□□□□ -0.98
USP4-201ENST00000265560 LRP2P98164 4655 aa8.93□□□□□ -0.98
USP4-201ENST00000265560 OXTP01178 125 aa8.93□□□□□ -0.98
USP4-201ENST00000265560 CYP4F30PQ9H0H9 118 aa8.92□□□□□ -0.98
USP4-201ENST00000265560 J3QL48 77 aa8.89□□□□□ -0.99
USP4-201ENST00000265560 LOC101927531A0A1B0GV80 90 aa8.88□□□□□ -0.99
USP4-201ENST00000265560 C20orf166-AS1Q96NR2 134 aa8.88□□□□□ -0.99
USP4-201ENST00000265560 A8MUU9 505 aa8.88□□□□□ -0.99
USP4-201ENST00000265560 FP248Q71RG6 208 aaPredicted RBP8.85□□□□□ -0.99
USP4-201ENST00000265560 HERC1Q15751 4861 aa8.83□□□□□ -1
USP4-201ENST00000265560 HRES1P13985 223 aa8.83□□□□□ -1
USP4-201ENST00000265560 XP32Q5T750 250 aa8.83□□□□□ -1
USP4-201ENST00000265560 SERP1Q9Y6X1 66 aa8.79□□□□□ -1
USP4-201ENST00000265560 Q75L30 129 aa8.78□□□□□ -1
USP4-201ENST00000265560 ATP5EP56381 51 aaPredicted RBP8.78□□□□□ -1
USP4-201ENST00000265560 SPANXA2-OT1Q8N9U9 137 aa8.76□□□□□ -1.01
USP4-201ENST00000265560 C4orf26Q17RF5 130 aa8.75□□□□□ -1.01
USP4-201ENST00000265560 ATP11AUNQ6ZP68 121 aa8.75□□□□□ -1.01
USP4-201ENST00000265560 SPINK7P58062 85 aa8.74□□□□□ -1.01
USP4-201ENST00000265560 C7orf65Q6ZTY9 151 aa8.74□□□□□ -1.01
USP4-201ENST00000265560 RPS28P62857 69 aaKnown RBP8.74□□□□□ -1.01
USP4-201ENST00000265560 RPL37P61927 97 aaKnown RBP8.72□□□□□ -1.01
USP4-201ENST00000265560 COA5Q86WW8 74 aa8.67□□□□□ -1.02
USP4-201ENST00000265560 MPLKIPQ8TAP9 179 aa8.67□□□□□ -1.02
USP4-201ENST00000265560 TPRXLQ17RH7 258 aa8.66□□□□□ -1.02
USP4-201ENST00000265560 MUC2Q02817 5179 aa8.61□□□□□ -1.03
USP4-201ENST00000265560 DMAC1Q96GE9 116 aa8.6□□□□□ -1.03
USP4-201ENST00000265560 SMIM26A0A096LP01 95 aa8.58□□□□□ -1.04
USP4-201ENST00000265560 ACYP2P14621 99 aa8.57□□□□□ -1.04
USP4-201ENST00000265560 KRTAP3-1Q9BYR8 98 aa8.56□□□□□ -1.04
USP4-201ENST00000265560 CHKB-CPT1BH3BT56 60 aa8.52□□□□□ -1.05
USP4-201ENST00000265560 HMCN2Q8NDA2 5059 aa8.5□□□□□ -1.05
USP4-201ENST00000265560 PSPHP1O15172 72 aa8.47□□□□□ -1.05
USP4-201ENST00000265560 COX6B2Q6YFQ2 88 aa8.44□□□□□ -1.06
USP4-201ENST00000265560 KRTAP4-1Q9BYQ7 146 aa8.41□□□□□ -1.06
USP4-201ENST00000265560 A8MUN3 132 aa8.4□□□□□ -1.07
USP4-201ENST00000265560 MUC17Q685J3 4493 aa8.4□□□□□ -1.07
USP4-201ENST00000265560 SEC61BP60468 96 aaKnown RBP8.37□□□□□ -1.07
USP4-201ENST00000265560 Q1T7F1 81 aa8.37□□□□□ -1.07
USP4-201ENST00000265560 PRR15LQ9BU68 103 aa8.36□□□□□ -1.07
USP4-201ENST00000265560 UBR4Q5T4S7 5183 aa8.34□□□□□ -1.07
USP4-201ENST00000265560 RNF213Q63HN8 5207 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms