RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NISCHQ9Y2I1 1504 aa36.78■■■■□ 3.48
USP4-201ENST00000265560 CCDC180Q9P1Z9 1646 aa31.73■■■□□ 2.67
USP4-201ENST00000265560 DCAF8L2P0C7V8 631 aa31.08■■■□□ 2.57
USP4-201ENST00000265560 ZCCHC6Q5VYS8 1495 aaKnown RBP30.86■■■□□ 2.53
USP4-201ENST00000265560 SHROOM4Q9ULL8 1493 aa30.74■■■□□ 2.51
USP4-201ENST00000265560 ABCC9O60706 1549 aa30.53■■■□□ 2.48
USP4-201ENST00000265560 DCAF1Q9Y4B6 1507 aa30.09■■■□□ 2.41
USP4-201ENST00000265560 SCRIBQ14160 1630 aa29.68■■■□□ 2.34
USP4-201ENST00000265560 NACADO15069 1562 aa29.63■■■□□ 2.33
USP4-201ENST00000265560 SUPT5HO00267 1087 aaKnown RBP29.62■■■□□ 2.33
USP4-201ENST00000265560 MYO15BQ96JP2 1530 aa29.62■■■□□ 2.33
USP4-201ENST00000265560 RB1CC1Q8TDY2 1594 aa29.42■■■□□ 2.3
USP4-201ENST00000265560 PABPN1Q86U42 306 aaKnown RBP eCLIP29.02■■■□□ 2.24
USP4-201ENST00000265560 UNC13AQ9UPW8 1703 aa28.97■■■□□ 2.23
USP4-201ENST00000265560 CECR2Q9BXF3 1484 aa28.84■■■□□ 2.21
USP4-201ENST00000265560 RSF1Q96T23 1441 aaPredicted RBP28.7■■■□□ 2.19
USP4-201ENST00000265560 BICRAQ9NZM4 1560 aa28.66■■■□□ 2.18
USP4-201ENST00000265560 MROH2BQ7Z745 1585 aa28.58■■■□□ 2.17
USP4-201ENST00000265560 WIZO95785 1651 aa28.38■■■□□ 2.13
USP4-201ENST00000265560 BAZ1AQ9NRL2 1556 aaPredicted RBP28.32■■■□□ 2.12
USP4-201ENST00000265560 SMARCA4P51532 1647 aa28.24■■■□□ 2.11
USP4-201ENST00000265560 CHIC1Q5VXU3 224 aa28.16■■■□□ 2.1
USP4-201ENST00000265560 TOP2AP11388 1531 aaKnown RBP27.85■■■□□ 2.05
USP4-201ENST00000265560 ATAD2BQ9ULI0 1458 aa27.81■■■□□ 2.04
USP4-201ENST00000265560 EIF4G1Q04637 1599 aaKnown RBP27.79■■■□□ 2.04
USP4-201ENST00000265560 CCDC88BA6NC98 1476 aa27.77■■■□□ 2.04
USP4-201ENST00000265560 BAZ1BQ9UIG0 1483 aaKnown RBP27.69■■■□□ 2.02
USP4-201ENST00000265560 SMARCA2P51531 1590 aa27.69■■■□□ 2.02
USP4-201ENST00000265560 PEG3Q9GZU2 1588 aa27.68■■■□□ 2.02
USP4-201ENST00000265560 TRIM41Q8WV44 630 aa27.62■■■□□ 2.01
USP4-201ENST00000265560 FAM9AQ8IZU1 332 aaPredicted RBP27.45■■□□□ 1.98
USP4-201ENST00000265560 NCAPD3P42695 1498 aa27.44■■□□□ 1.98
USP4-201ENST00000265560 CC2D2AQ9P2K1 1620 aa27.42■■□□□ 1.98
USP4-201ENST00000265560 ABCC8Q09428 1581 aa27.37■■□□□ 1.97
USP4-201ENST00000265560 LOC105371045A0A1W2PR82 267 aa27.37■■□□□ 1.97
USP4-201ENST00000265560 EHMT2Q96KQ7 1210 aa27.33■■□□□ 1.97
USP4-201ENST00000265560 HMGXB3Q12766 1538 aa27.3■■□□□ 1.96
USP4-201ENST00000265560 DNAJC5BQ9UF47 199 aa27.21■■□□□ 1.95
USP4-201ENST00000265560 WRNQ14191 1432 aaPredicted RBP eCLIP27.01■■□□□ 1.91
USP4-201ENST00000265560 CFTRP13569 1480 aa26.91■■□□□ 1.9
USP4-201ENST00000265560 SYNJ1O43426 1573 aa26.91■■□□□ 1.9
USP4-201ENST00000265560 SOGA1O94964 1423 aa26.9■■□□□ 1.9
USP4-201ENST00000265560 CADPSQ9ULU8 1353 aa26.87■■□□□ 1.89
USP4-201ENST00000265560 NESP48681 1621 aa26.85■■□□□ 1.89
USP4-201ENST00000265560 RUSC2Q8N2Y8 1516 aa26.85■■□□□ 1.89
USP4-201ENST00000265560 CUX1P39880 1505 aa26.67■■□□□ 1.86
USP4-201ENST00000265560 CSRNP3Q8WYN3 585 aa26.63■■□□□ 1.85
USP4-201ENST00000265560 TOP2BQ02880 1626 aa26.63■■□□□ 1.85
USP4-201ENST00000265560 FANCD2Q9BXW9 1451 aa26.61■■□□□ 1.85
USP4-201ENST00000265560 PRDM2Q13029 1718 aa26.57■■□□□ 1.84
USP4-201ENST00000265560 BIVM-ERCC5R4GMW8 1640 aa26.53■■□□□ 1.84
USP4-201ENST00000265560 UBTFP17480 764 aaKnown RBP26.51■■□□□ 1.83
USP4-201ENST00000265560 LAMC3Q9Y6N6 1575 aa26.43■■□□□ 1.82
USP4-201ENST00000265560 EEA1Q15075 1411 aa26.42■■□□□ 1.82
USP4-201ENST00000265560 RANGAP1P46060 587 aaPredicted RBP26.41■■□□□ 1.82
USP4-201ENST00000265560 FGD5Q6ZNL6 1462 aa26.38■■□□□ 1.81
USP4-201ENST00000265560 CEP164Q9UPV0 1460 aa26.38■■□□□ 1.81
USP4-201ENST00000265560 PDS5BQ9NTI5 1447 aa26.35■■□□□ 1.81
USP4-201ENST00000265560 KIF21AQ7Z4S6 1674 aa26.32■■□□□ 1.8
USP4-201ENST00000265560 RAD54L2Q9Y4B4 1467 aa26.31■■□□□ 1.8
USP4-201ENST00000265560 TOPBP1Q92547 1522 aa26.3■■□□□ 1.8
USP4-201ENST00000265560 PPARGC1BQ86YN6 1023 aaKnown RBP26.3■■□□□ 1.8
USP4-201ENST00000265560 CUX2O14529 1486 aa26.29■■□□□ 1.8
USP4-201ENST00000265560 URB2Q14146 1524 aaKnown RBP26.29■■□□□ 1.8
USP4-201ENST00000265560 RAPGEF2Q9Y4G8 1499 aa26.27■■□□□ 1.8
USP4-201ENST00000265560 KIF27Q86VH2 1401 aa26.27■■□□□ 1.8
USP4-201ENST00000265560 GOLGA3Q08378 1498 aa26.25■■□□□ 1.79
USP4-201ENST00000265560 DNMBPQ6XZF7 1577 aa26.24■■□□□ 1.79
USP4-201ENST00000265560 POLA1P09884 1462 aaPredicted RBP26.23■■□□□ 1.79
USP4-201ENST00000265560 PCGF6Q9BYE7 350 aa26.21■■□□□ 1.79
USP4-201ENST00000265560 CEP162Q5TB80 1403 aa26.2■■□□□ 1.78
USP4-201ENST00000265560 TNIKQ9UKE5 1360 aa26.19■■□□□ 1.78
USP4-201ENST00000265560 KIF21BO75037 1637 aa26.13■■□□□ 1.77
USP4-201ENST00000265560 TTBK1Q5TCY1 1321 aaPredicted RBP26.12■■□□□ 1.77
USP4-201ENST00000265560 IGF1RP08069 1367 aa26.11■■□□□ 1.77
USP4-201ENST00000265560 TDRD9Q8NDG6 1382 aaKnown RBP26.1■■□□□ 1.77
USP4-201ENST00000265560 PRXQ9BXM0 1461 aa26.07■■□□□ 1.76
USP4-201ENST00000265560 ERCC6Q03468 1493 aa26.07■■□□□ 1.76
USP4-201ENST00000265560 ABCA10Q8WWZ4 1543 aa25.99■■□□□ 1.75
USP4-201ENST00000265560 MRC2Q9UBG0 1479 aa25.99■■□□□ 1.75
USP4-201ENST00000265560 CARMIL1Q5VZK9 1371 aa25.99■■□□□ 1.75
USP4-201ENST00000265560 CLIP1P30622 1438 aa25.96■■□□□ 1.75
USP4-201ENST00000265560 ERICH3Q5RHP9 1530 aa25.9■■□□□ 1.74
USP4-201ENST00000265560 AQRO60306 1485 aaKnown RBP eCLIP25.88■■□□□ 1.739e-7■■■■■ 33
USP4-201ENST00000265560 TRIM26Q12899 539 aaPredicted RBP25.86■■□□□ 1.73
USP4-201ENST00000265560 GAPVD1Q14C86 1478 aa25.85■■□□□ 1.73
USP4-201ENST00000265560 TARBP1Q13395 1621 aaKnown RBP25.83■■□□□ 1.73
USP4-201ENST00000265560 WDR97A6NE52 1622 aa25.82■■□□□ 1.72
USP4-201ENST00000265560 ZNF608Q9ULD9 1512 aaPredicted RBP25.8■■□□□ 1.72
USP4-201ENST00000265560 P3H3Q8IVL6 736 aa25.78■■□□□ 1.72
USP4-201ENST00000265560 WDR62O43379 1518 aa25.78■■□□□ 1.72
USP4-201ENST00000265560 ABCA5Q8WWZ7 1642 aa25.75■■□□□ 1.71
USP4-201ENST00000265560 THOC2Q8NI27 1593 aaKnown RBP25.72■■□□□ 1.71
USP4-201ENST00000265560 ARAP1Q96P48 1450 aa25.66■■□□□ 1.7
USP4-201ENST00000265560 IFT140Q96RY7 1462 aa25.65■■□□□ 1.7
USP4-201ENST00000265560 VPS8Q8N3P4 1428 aa25.65■■□□□ 1.7
USP4-201ENST00000265560 ARHGAP35Q9NRY4 1499 aa25.63■■□□□ 1.69
USP4-201ENST00000265560 CUL7Q14999 1698 aa25.62■■□□□ 1.69
USP4-201ENST00000265560 APLP2Q06481 763 aa25.61■■□□□ 1.69
USP4-201ENST00000265560 FBLN2P98095 1184 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms