RNA–Protein interactions for RNA: ENST00000244745.3

SOX4-201, Transcript of SRY-box 4, humanhuman

APPRIS P1 BASIC

Gene SOX4, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4-201ENST00000244745 NDUFAF8A1L188 74 aa11.08□□□□□ -0.64
SOX4-201ENST00000244745 TACC2O95359 2948 aa11.08□□□□□ -0.64
SOX4-201ENST00000244745 COL12A1Q99715 3063 aa11.08□□□□□ -0.64
SOX4-201ENST00000244745 NOTCH1P46531 2555 aa11.06□□□□□ -0.64
SOX4-201ENST00000244745 UTP20O75691 2785 aaKnown RBP11.03□□□□□ -0.64
SOX4-201ENST00000244745 UBR5O95071 2799 aaPredicted RBP11.02□□□□□ -0.65
SOX4-201ENST00000244745 COL6A5A8TX70 2615 aa11.02□□□□□ -0.65
SOX4-201ENST00000244745 A8MUU9 505 aa10.99□□□□□ -0.65
SOX4-201ENST00000244745 ITPR2Q14571 2701 aa10.99□□□□□ -0.65
SOX4-201ENST00000244745 TNRC18O15417 2968 aaPredicted RBP10.94□□□□□ -0.66
SOX4-201ENST00000244745 ASH1LQ9NR48 2969 aaKnown RBP10.93□□□□□ -0.66
SOX4-201ENST00000244745 BAHCC1Q9P281 2608 aa10.92□□□□□ -0.66
SOX4-201ENST00000244745 APCP25054 2843 aa10.92□□□□□ -0.66
SOX4-201ENST00000244745 HRNRQ86YZ3 2850 aaPredicted RBP10.9□□□□□ -0.66
SOX4-201ENST00000244745 FLNCQ14315 2725 aa10.89□□□□□ -0.67
SOX4-201ENST00000244745 STAB1Q9NY15 2570 aa10.89□□□□□ -0.67
SOX4-201ENST00000244745 LOC400499M0QZD8 3231 aa10.88□□□□□ -0.67
SOX4-201ENST00000244745 DMXL1Q9Y485 3027 aa10.84□□□□□ -0.67
SOX4-201ENST00000244745 DMBT1Q9UGM3 2413 aaPredicted RBP10.82□□□□□ -0.68
SOX4-201ENST00000244745 NSD1Q96L73 2696 aaPredicted RBP10.81□□□□□ -0.68
SOX4-201ENST00000244745 KMT2BQ9UMN6 2715 aaPredicted RBP10.81□□□□□ -0.68
SOX4-201ENST00000244745 HIVEP1P15822 2718 aa10.79□□□□□ -0.68
SOX4-201ENST00000244745 WDFY3Q8IZQ1 3526 aa10.78□□□□□ -0.68
SOX4-201ENST00000244745 C20orf166-AS1Q96NR2 134 aa10.76□□□□□ -0.69
SOX4-201ENST00000244745 H0YAA0 97 aa10.72□□□□□ -0.69
SOX4-201ENST00000244745 C10orf95Q9H7T3 257 aa10.69□□□□□ -0.7
SOX4-201ENST00000244745 KRTAP1-4P0C5Y4 121 aa10.69□□□□□ -0.7
SOX4-201ENST00000244745 STAB2Q8WWQ8 2551 aa10.69□□□□□ -0.7
SOX4-201ENST00000244745 ZANQ9Y493 2812 aa10.63□□□□□ -0.71
SOX4-201ENST00000244745 ASPMQ8IZT6 3477 aa10.62□□□□□ -0.71
SOX4-201ENST00000244745 ZFHX4Q86UP3 3567 aa10.62□□□□□ -0.71
SOX4-201ENST00000244745 DCHS1Q96JQ0 3298 aa10.61□□□□□ -0.71
SOX4-201ENST00000244745 CELSR2Q9HCU4 2923 aa10.6□□□□□ -0.71
SOX4-201ENST00000244745 CRYBG3Q68DQ2 2970 aa10.54□□□□□ -0.72
SOX4-201ENST00000244745 FBN2P35556 2912 aa10.49□□□□□ -0.73
SOX4-201ENST00000244745 RELNP78509 3460 aa10.49□□□□□ -0.73
SOX4-201ENST00000244745 DCHS2Q6V1P9 2916 aa10.48□□□□□ -0.73
SOX4-201ENST00000244745 CSMD1Q96PZ7 3565 aa10.48□□□□□ -0.73
SOX4-201ENST00000244745 XP32Q5T750 250 aa10.47□□□□□ -0.73
SOX4-201ENST00000244745 NIPBLQ6KC79 2804 aaeCLIP10.46□□□□□ -0.73
SOX4-201ENST00000244745 TNP1P09430 55 aa10.42□□□□□ -0.74
SOX4-201ENST00000244745 P0C880 135 aa10.38□□□□□ -0.75
SOX4-201ENST00000244745 SMG1Q96Q15 3661 aaKnown RBP10.35□□□□□ -0.75
SOX4-201ENST00000244745 LAMA5O15230 3695 aa10.34□□□□□ -0.75
SOX4-201ENST00000244745 DMDP11532 3685 aa10.33□□□□□ -0.76
SOX4-201ENST00000244745 KRTAP13-3Q3SY46 172 aa10.33□□□□□ -0.76
SOX4-201ENST00000244745 PP632Q6XCG6 107 aa10.3□□□□□ -0.76
SOX4-201ENST00000244745 NF1P21359 2839 aa10.24□□□□□ -0.77
SOX4-201ENST00000244745 KRTAP21-3Q3LHN1 58 aa10.2□□□□□ -0.78
SOX4-201ENST00000244745 CELSR1Q9NYQ6 3014 aa10.2□□□□□ -0.78
SOX4-201ENST00000244745 KRTAP10-8P60410 259 aa10.2□□□□□ -0.78
SOX4-201ENST00000244745 A0A1B0GVY2 172 aa10.18□□□□□ -0.78
SOX4-201ENST00000244745 MXRA5Q9NR99 2828 aa10.17□□□□□ -0.78
SOX4-201ENST00000244745 TENM4Q6N022 2769 aa10.1□□□□□ -0.79
SOX4-201ENST00000244745 TPRXLQ17RH7 258 aa10.1□□□□□ -0.79
SOX4-201ENST00000244745 SVEP1Q4LDE5 3571 aa10.04□□□□□ -0.8
SOX4-201ENST00000244745 NBPF19A0A087WUL8 3843 aa10.02□□□□□ -0.81
SOX4-201ENST00000244745 KRTAP12-2P59991 146 aa9.99□□□□□ -0.81
SOX4-201ENST00000244745 TENM3Q9P273 2699 aa9.98□□□□□ -0.81
SOX4-201ENST00000244745 TGP01266 2768 aa9.96□□□□□ -0.81
SOX4-201ENST00000244745 ANK3Q12955 4377 aaKnown RBP9.95□□□□□ -0.82
SOX4-201ENST00000244745 PDZD2O15018 2839 aa9.87□□□□□ -0.83
SOX4-201ENST00000244745 KRTAP3-1Q9BYR8 98 aa9.83□□□□□ -0.84
SOX4-201ENST00000244745 SPENQ96T58 3664 aaKnown RBP9.82□□□□□ -0.84
SOX4-201ENST00000244745 PRO2289Q9P1D8 64 aa9.81□□□□□ -0.84
SOX4-201ENST00000244745 TENM2Q9NT68 2774 aa9.79□□□□□ -0.84
SOX4-201ENST00000244745 BSNQ9UPA5 3926 aa9.78□□□□□ -0.84
SOX4-201ENST00000244745 KRTAP10-10P60014 251 aa9.76□□□□□ -0.85
SOX4-201ENST00000244745 KRTAP12-1P59990 96 aa9.75□□□□□ -0.85
SOX4-201ENST00000244745 MUC3AQ02505 3323 aa9.75□□□□□ -0.85
SOX4-201ENST00000244745 TENM1Q9UKZ4 2725 aa9.75□□□□□ -0.85
SOX4-201ENST00000244745 KRTAP13-4Q3LI77 160 aa9.63□□□□□ -0.87
SOX4-201ENST00000244745 CUBNO60494 3623 aa9.57□□□□□ -0.88
SOX4-201ENST00000244745 CSMD2Q7Z408 3487 aa9.55□□□□□ -0.88
SOX4-201ENST00000244745 KRTAP10-6P60371 365 aaPredicted RBP9.51□□□□□ -0.89
SOX4-201ENST00000244745 VWFP04275 2813 aa9.51□□□□□ -0.89
SOX4-201ENST00000244745 OTOGQ6ZRI0 2925 aa9.49□□□□□ -0.89
SOX4-201ENST00000244745 TRRAPQ9Y4A5 3859 aa9.46□□□□□ -0.9
SOX4-201ENST00000244745 VPS13CQ709C8 3753 aa9.45□□□□□ -0.9
SOX4-201ENST00000244745 KRTAP15-1Q3LI76 137 aa9.45□□□□□ -0.9
SOX4-201ENST00000244745 HUWE1Q7Z6Z7 4374 aaKnown RBP9.44□□□□□ -0.9
SOX4-201ENST00000244745 FBN1P35555 2871 aaKnown RBP9.4□□□□□ -0.9
SOX4-201ENST00000244745 PKD1L1Q8TDX9 2849 aa9.38□□□□□ -0.91
SOX4-201ENST00000244745 ZFHX3Q15911 3703 aa9.37□□□□□ -0.91
SOX4-201ENST00000244745 KRTAP3-3Q9BYR6 98 aa9.22□□□□□ -0.93
SOX4-201ENST00000244745 FBN3Q75N90 2809 aa9.21□□□□□ -0.93
SOX4-201ENST00000244745 AKAP9Q99996 3911 aa9.21□□□□□ -0.93
SOX4-201ENST00000244745 KRTAP3-2Q9BYR7 98 aa9.21□□□□□ -0.94
SOX4-201ENST00000244745 MEGF8Q7Z7M0 2845 aa9.11□□□□□ -0.95
SOX4-201ENST00000244745 SRRM2Q9UQ35 2752 aaKnown RBP9.08□□□□□ -0.96
SOX4-201ENST00000244745 MT1HL1P0DM35 61 aa9.07□□□□□ -0.96
SOX4-201ENST00000244745 ALMS1Q8TCU4 4167 aa9□□□□□ -0.97
SOX4-201ENST00000244745 KRTAP10-4P60372 401 aaPredicted RBP9□□□□□ -0.97
SOX4-201ENST00000244745 INE1O15225 51 aa8.95□□□□□ -0.98
SOX4-201ENST00000244745 CSMD3Q7Z407 3707 aa8.9□□□□□ -0.98
SOX4-201ENST00000244745 ZNF469Q96JG9 3925 aaPredicted RBP8.89□□□□□ -0.99
SOX4-201ENST00000244745 DNAH9Q9NYC9 4486 aa8.85□□□□□ -0.99
SOX4-201ENST00000244745 DNAH1Q9P2D7 4330 aa8.77□□□□□ -1
SOX4-201ENST00000244745 COL7A1Q02388 2944 aa8.76□□□□□ -1.01
SOX4-201ENST00000244745 KRTAP4-5Q9BYR2 181 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms