RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 TNP1P09430 55 aa10.34□□□□□ -0.75
SMPD3-201ENST00000219334 APCP25054 2843 aa10.33□□□□□ -0.76
SMPD3-201ENST00000219334 NIPBLQ6KC79 2804 aaeCLIP10.33□□□□□ -0.76
SMPD3-201ENST00000219334 CRYBG3Q68DQ2 2970 aa10.33□□□□□ -0.76
SMPD3-201ENST00000219334 NBEAQ8NFP9 2946 aa10.31□□□□□ -0.76
SMPD3-201ENST00000219334 H3BS24 57 aa10.3□□□□□ -0.76
SMPD3-201ENST00000219334 XP32Q5T750 250 aa10.23□□□□□ -0.77
SMPD3-201ENST00000219334 FRYLO94915 3013 aa10.23□□□□□ -0.77
SMPD3-201ENST00000219334 KALRNO60229 2985 aa10.23□□□□□ -0.77
SMPD3-201ENST00000219334 KRTAP25-1Q3LHN0 102 aa10.23□□□□□ -0.77
SMPD3-201ENST00000219334 SPTBN5Q9NRC6 3674 aaKnown RBP10.22□□□□□ -0.77
SMPD3-201ENST00000219334 LRBAP50851 2863 aa10.21□□□□□ -0.77
SMPD3-201ENST00000219334 KRTAP1-4P0C5Y4 121 aa10.21□□□□□ -0.78
SMPD3-201ENST00000219334 ASH1LQ9NR48 2969 aaKnown RBP10.2□□□□□ -0.78
SMPD3-201ENST00000219334 FREM2Q5SZK8 3169 aa10.16□□□□□ -0.78
SMPD3-201ENST00000219334 CELSR2Q9HCU4 2923 aa10.15□□□□□ -0.78
SMPD3-201ENST00000219334 SPEGQ15772 3267 aa10.15□□□□□ -0.78
SMPD3-201ENST00000219334 COL6A3P12111 3177 aa10.14□□□□□ -0.79
SMPD3-201ENST00000219334 KRTAP10-8P60410 259 aa10.12□□□□□ -0.79
SMPD3-201ENST00000219334 TPRXLQ17RH7 258 aa10.12□□□□□ -0.79
SMPD3-201ENST00000219334 A0A1B0GVY2 172 aa10.12□□□□□ -0.79
SMPD3-201ENST00000219334 A6NN06 94 aa10.1□□□□□ -0.79
SMPD3-201ENST00000219334 TENM3Q9P273 2699 aa10.09□□□□□ -0.79
SMPD3-201ENST00000219334 BOD1L1Q8NFC6 3051 aa10.07□□□□□ -0.8
SMPD3-201ENST00000219334 ADGRG4Q8IZF6 3080 aa10.06□□□□□ -0.8
SMPD3-201ENST00000219334 DCHS2Q6V1P9 2916 aa10.04□□□□□ -0.8
SMPD3-201ENST00000219334 ZZEF1O43149 2961 aa10.02□□□□□ -0.8
SMPD3-201ENST00000219334 KRTAP10-10P60014 251 aa10□□□□□ -0.81
SMPD3-201ENST00000219334 USP34Q70CQ2 3546 aa10□□□□□ -0.81
SMPD3-201ENST00000219334 C10orf95Q9H7T3 257 aa9.98□□□□□ -0.81
SMPD3-201ENST00000219334 TENM1Q9UKZ4 2725 aa9.98□□□□□ -0.81
SMPD3-201ENST00000219334 KRTAP16-1A8MUX0 517 aa9.95□□□□□ -0.82
SMPD3-201ENST00000219334 EYSQ5T1H1 3165 aa9.94□□□□□ -0.82
SMPD3-201ENST00000219334 PP632Q6XCG6 107 aa9.94□□□□□ -0.82
SMPD3-201ENST00000219334 MYO15AQ9UKN7 3530 aa9.9□□□□□ -0.82
SMPD3-201ENST00000219334 KRTAP13-3Q3SY46 172 aa9.88□□□□□ -0.83
SMPD3-201ENST00000219334 PRO2289Q9P1D8 64 aa9.88□□□□□ -0.83
SMPD3-201ENST00000219334 TENM2Q9NT68 2774 aa9.86□□□□□ -0.83
SMPD3-201ENST00000219334 NDUFAF8A1L188 74 aa9.85□□□□□ -0.83
SMPD3-201ENST00000219334 ZANQ9Y493 2812 aa9.84□□□□□ -0.83
SMPD3-201ENST00000219334 NF1P21359 2839 aa9.82□□□□□ -0.84
SMPD3-201ENST00000219334 TNRC18O15417 2968 aaPredicted RBP9.78□□□□□ -0.84
SMPD3-201ENST00000219334 CFAP47Q6ZTR5 3102 aa9.76□□□□□ -0.85
SMPD3-201ENST00000219334 LOC400499M0QZD8 3231 aa9.73□□□□□ -0.85
SMPD3-201ENST00000219334 HRNRQ86YZ3 2850 aaPredicted RBP9.68□□□□□ -0.86
SMPD3-201ENST00000219334 DMXL1Q9Y485 3027 aa9.66□□□□□ -0.86
SMPD3-201ENST00000219334 H0YAA0 97 aa9.65□□□□□ -0.86
SMPD3-201ENST00000219334 P0C880 135 aa9.61□□□□□ -0.87
SMPD3-201ENST00000219334 PKD1L1Q8TDX9 2849 aa9.59□□□□□ -0.87
SMPD3-201ENST00000219334 FBN2P35556 2912 aa9.55□□□□□ -0.88
SMPD3-201ENST00000219334 WDFY3Q8IZQ1 3526 aa9.53□□□□□ -0.88
SMPD3-201ENST00000219334 MXRA5Q9NR99 2828 aa9.5□□□□□ -0.89
SMPD3-201ENST00000219334 CELSR1Q9NYQ6 3014 aa9.45□□□□□ -0.9
SMPD3-201ENST00000219334 TGP01266 2768 aa9.44□□□□□ -0.9
SMPD3-201ENST00000219334 PDZD2O15018 2839 aa9.4□□□□□ -0.91
SMPD3-201ENST00000219334 ZFHX4Q86UP3 3567 aa9.39□□□□□ -0.91
SMPD3-201ENST00000219334 VWFP04275 2813 aa9.38□□□□□ -0.91
SMPD3-201ENST00000219334 DCHS1Q96JQ0 3298 aa9.29□□□□□ -0.92
SMPD3-201ENST00000219334 RELNP78509 3460 aa9.27□□□□□ -0.93
SMPD3-201ENST00000219334 DMDP11532 3685 aa9.25□□□□□ -0.93
SMPD3-201ENST00000219334 ASPMQ8IZT6 3477 aa9.24□□□□□ -0.93
SMPD3-201ENST00000219334 LAMA5O15230 3695 aa9.19□□□□□ -0.94
SMPD3-201ENST00000219334 CSMD1Q96PZ7 3565 aa9.19□□□□□ -0.94
SMPD3-201ENST00000219334 SMG1Q96Q15 3661 aaKnown RBP9.18□□□□□ -0.94
SMPD3-201ENST00000219334 KRTAP12-2P59991 146 aa9.15□□□□□ -0.94
SMPD3-201ENST00000219334 KRTAP13-4Q3LI77 160 aa9.11□□□□□ -0.95
SMPD3-201ENST00000219334 SRRM2Q9UQ35 2752 aaKnown RBP9.1□□□□□ -0.95
SMPD3-201ENST00000219334 KRTAP12-1P59990 96 aa9.01□□□□□ -0.97
SMPD3-201ENST00000219334 MUC3AQ02505 3323 aa9□□□□□ -0.97
SMPD3-201ENST00000219334 KRTAP3-1Q9BYR8 98 aa8.96□□□□□ -0.98
SMPD3-201ENST00000219334 FBN3Q75N90 2809 aa8.92□□□□□ -0.98
SMPD3-201ENST00000219334 FBN1P35555 2871 aaKnown RBP8.89□□□□□ -0.99
SMPD3-201ENST00000219334 SVEP1Q4LDE5 3571 aa8.88□□□□□ -0.99
SMPD3-201ENST00000219334 KRTAP15-1Q3LI76 137 aa8.85□□□□□ -0.99
SMPD3-201ENST00000219334 MT1HL1P0DM35 61 aa8.83□□□□□ -1
SMPD3-201ENST00000219334 OTOGQ6ZRI0 2925 aa8.82□□□□□ -1
SMPD3-201ENST00000219334 SPENQ96T58 3664 aaKnown RBP8.72□□□□□ -1.01
SMPD3-201ENST00000219334 BSNQ9UPA5 3926 aa8.7□□□□□ -1.02
SMPD3-201ENST00000219334 NBPF19A0A087WUL8 3843 aa8.7□□□□□ -1.02
SMPD3-201ENST00000219334 KRTAP10-6P60371 365 aaPredicted RBP8.69□□□□□ -1.02
SMPD3-201ENST00000219334 ZFHX3Q15911 3703 aa8.65□□□□□ -1.03
SMPD3-201ENST00000219334 MEGF8Q7Z7M0 2845 aa8.61□□□□□ -1.03
SMPD3-201ENST00000219334 COL7A1Q02388 2944 aa8.6□□□□□ -1.03
SMPD3-201ENST00000219334 ANK3Q12955 4377 aaKnown RBP8.59□□□□□ -1.03
SMPD3-201ENST00000219334 KRTAP4-5Q9BYR2 181 aa8.59□□□□□ -1.03
SMPD3-201ENST00000219334 KRTAP10-12P60413 245 aa8.51□□□□□ -1.05
SMPD3-201ENST00000219334 CUBNO60494 3623 aa8.48□□□□□ -1.05
SMPD3-201ENST00000219334 KRTAP10-4P60372 401 aaPredicted RBP8.46□□□□□ -1.06
SMPD3-201ENST00000219334 CRCT1Q9UGL9 99 aa8.43□□□□□ -1.06
SMPD3-201ENST00000219334 CSMD2Q7Z408 3487 aa8.39□□□□□ -1.07
SMPD3-201ENST00000219334 KRTAP3-3Q9BYR6 98 aa8.36□□□□□ -1.07
SMPD3-201ENST00000219334 KRTAP3-2Q9BYR7 98 aa8.35□□□□□ -1.07
SMPD3-201ENST00000219334 TRRAPQ9Y4A5 3859 aa8.26□□□□□ -1.09
SMPD3-201ENST00000219334 VPS13CQ709C8 3753 aa8.26□□□□□ -1.09
SMPD3-201ENST00000219334 KRTAP12-3P60328 96 aa8.23□□□□□ -1.09
SMPD3-201ENST00000219334 INE1O15225 51 aa8.07□□□□□ -1.12
SMPD3-201ENST00000219334 HUWE1Q7Z6Z7 4374 aaKnown RBP8.07□□□□□ -1.12
SMPD3-201ENST00000219334 LCE3AQ5TA76 89 aa8.05□□□□□ -1.12
SMPD3-201ENST00000219334 KRTAP23-1A1A580 65 aa8.03□□□□□ -1.12
SMPD3-201ENST00000219334 KRTAP8-1Q8IUC2 63 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms