RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Rpl15Q9CZM2 204 aaKnown RBP13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 BC048502Q80Y74 154 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Igkv14-111A0A140T8P9 117 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 NrtnP97463 195 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Lsm4Q9QXA5 137 aaKnown RBP13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm7102J3QQ10 178 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 CckP09240 115 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm9747Q810H1 104 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 P01741 114 aa13.58□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Fndc7A2AED3 737 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 LeprotO89013 131 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Q9CQM1 111 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Tomm40Q9QYA2 361 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Crlf1Q9JM58 425 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 4931422A03RikA2BHN9 113 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ubl5Q9EPV8 73 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 GhrhP16043 103 aa13.58□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Wbp1P97764 304 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Olfr211Q8VGH2 309 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gm26727M0QWT1 121 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ss18l2Q9D174 77 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Zfp648D3Z0W3 525 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Cdkn1aP39689 159 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 AdmP97297 184 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Trav6-4A0A075B6B4 115 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ube2d2bQ6ZWY6 147 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 A730015C16RikQ8C992 119 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 NdpP48744 131 aa13.57□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gm7075D3Z497 112 aa13.56□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Col24a1Q30D77 1733 aa13.56□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gpx1P11352 201 aa13.56□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gm10912Q3UXH0 145 aa13.56□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Tal2Q62282 108 aa13.56□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 PtprbB2RU80 1998 aa13.56□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 P18526 117 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ighv1-16A0A075B5U1 98 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Igkv3-2A0A075B5P0 119 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ighv1-18A0A0A6YXN4 117 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 PkigO70139 76 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Trav7-2Q5R1I3 112 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Pear1Q8VIK5 1034 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Znf319Q9ERR8 581 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Rs1Q9Z1L4 224 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Trbv12-2A0A0B4J1H1 124 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Igkv8-24A0A140T8P5 121 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Polr3kQ9CQZ7 108 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Spink1P09036 80 aa13.55□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Mapk1ip1Q9D7G9 263 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Reg4Q9D8G5 157 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 H2al1jA2BFR3 109 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Edn1P22387 202 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gm10775Q3V290 127 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Cxcl13O55038 109 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Pygo1Q9D0P5 417 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Trbv30A0A0B4J1P1 111 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 P01655 112 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gm37388A0A0A6YY46 143 aa13.54□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Gm20379A0A087WR34 119 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Cdkn2aQ64364 169 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Rspo4Q8BJ73 228 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Sap30O88574 220 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Trav4n-4A0A075B615 110 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 PtprqP0C5E4 2300 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Defb30Q30KN4 75 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ighv1-81A0A075B5Y4 117 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 6430628N08RikA0A0U1RQ45 177 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 BC067074F6RXI4 2391 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Cbln3Q9JHG0 197 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Cd5lQ9QWK4 352 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Tns1E9Q0S6 1888 aaKnown RBP13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Foxf2O54743 446 aa13.53□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Igkv3-1A0A075B5P1 119 aa13.52□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Pfn1P62962 140 aa13.52□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Ccpg1osV9GXK1 122 aa13.52□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Mrpl32Q9DCI9 187 aaKnown RBP13.52□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 SeboxP70368 190 aa13.52□□□□□ -0.24
Ccdc88a-201ENSMUST00000040182 Trbv13-3A0A0B4J1H2 113 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ccl12Q62401 104 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 SpinklQ8CEK3 90 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igh-VJ558P01758 117 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Vmo1Q5SXG7 201 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Defb6Q91VD6 63 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Smr2O09133 150 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Spata46Q4FZF2 204 aa13.52□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gm11020F6ZGD5 61 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Igkv4-80A0A075B5L7 116 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 P0C1Z5 52 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Nr2c2apQ3TV70 140 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Trav6d-7A0A075B6B0 112 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Asphd1Q2TA57 360 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gkn1Q9CR36 201 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Col4a3Q9QZS0 1669 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Tmem258P61166 79 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gm10306Q9CUK2 115 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 P01811 117 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 8030423J24RikQ9CX45 142 aa13.51□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Tmem256Q5F285 113 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Gm2564F6Z9S8 108 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ccl19O70460 108 aa13.5□□□□□ -0.25
Ccdc88a-201ENSMUST00000040182 Ighv1-31A0A0A6YWK5 117 aa13.5□□□□□ -0.25
Retrieved 100 of 22,080 RNA–protein pairs in 41.1 ms