RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 IGLV7-43P04211 117 aa10.27□□□□□ -0.77
CLN3-252ENST00000636907 PDE6GP18545 87 aa10.27□□□□□ -0.77
CLN3-252ENST00000636907 SPRR1BP22528 89 aa10.27□□□□□ -0.77
CLN3-252ENST00000636907 SRRM2Q9UQ35 2752 aaKnown RBP10.27□□□□□ -0.77
CLN3-252ENST00000636907 RYR3Q15413 4870 aa10.25□□□□□ -0.77
CLN3-252ENST00000636907 SPRR4Q96PI1 79 aa10.24□□□□□ -0.77
CLN3-252ENST00000636907 F8WEM9 126 aa10.23□□□□□ -0.77
CLN3-252ENST00000636907 XGP55808 180 aa10.23□□□□□ -0.77
CLN3-252ENST00000636907 LINC00846Q9NV44 126 aa10.23□□□□□ -0.77
CLN3-252ENST00000636907 SIGMAR1Q99720 223 aa10.2□□□□□ -0.78
CLN3-252ENST00000636907 ZNF706Q9Y5V0 76 aaPredicted RBP10.2□□□□□ -0.78
CLN3-252ENST00000636907 MT-ATP8P03928 68 aa10.19□□□□□ -0.78
CLN3-252ENST00000636907 LINC00483Q53H64 154 aa10.19□□□□□ -0.78
CLN3-252ENST00000636907 IGLV8-61A0A075B6I0 122 aa10.18□□□□□ -0.78
CLN3-252ENST00000636907 C21orf62-AS1Q17RA5 79 aa10.18□□□□□ -0.78
CLN3-252ENST00000636907 APOBP04114 4563 aaKnown RBP10.17□□□□□ -0.78
CLN3-252ENST00000636907 A0A1W2PNM2 257 aa10.16□□□□□ -0.78
CLN3-252ENST00000636907 IGFL1Q6UW32 110 aa10.16□□□□□ -0.78
CLN3-252ENST00000636907 A0A0G2JQZ4 141 aa10.15□□□□□ -0.78
CLN3-252ENST00000636907 LINC00643Q86TS7 51 aa10.15□□□□□ -0.79
CLN3-252ENST00000636907 Q8NBF4 154 aa10.14□□□□□ -0.79
CLN3-252ENST00000636907 ANAPC11Q9NYG5 84 aa10.13□□□□□ -0.79
CLN3-252ENST00000636907 UBL5Q9BZL1 73 aa10.12□□□□□ -0.79
CLN3-252ENST00000636907 IGLV9-49A0A0B4J1Y8 123 aa10.11□□□□□ -0.79
CLN3-252ENST00000636907 VPS13BQ7Z7G8 4022 aa10.11□□□□□ -0.79
CLN3-252ENST00000636907 SMR3BP02814 79 aaPredicted RBP10.1□□□□□ -0.79
CLN3-252ENST00000636907 Q6JHZ5 121 aa10.1□□□□□ -0.79
CLN3-252ENST00000636907 RPL37AP61513 92 aaKnown RBP10.09□□□□□ -0.79
CLN3-252ENST00000636907 C9orf153Q5TBE3 101 aa10.09□□□□□ -0.79
CLN3-252ENST00000636907 Q6ZVQ6 151 aa10.09□□□□□ -0.79
CLN3-252ENST00000636907 A0A1B0GW54 56 aa10.07□□□□□ -0.8
CLN3-252ENST00000636907 IGKV3D-7A0A0C4DH55 119 aa10.06□□□□□ -0.8
CLN3-252ENST00000636907 CRYGAP11844 174 aa10.06□□□□□ -0.8
CLN3-252ENST00000636907 MOBPQ13875 183 aa10.05□□□□□ -0.8
CLN3-252ENST00000636907 TRBV7-7A0A0K0K1E9 115 aa10.04□□□□□ -0.8
CLN3-252ENST00000636907 FAT1Q14517 4588 aa10.02□□□□□ -0.81
CLN3-252ENST00000636907 NREPQ16612 68 aa10.02□□□□□ -0.81
CLN3-252ENST00000636907 Q6Q795 121 aa10.02□□□□□ -0.81
CLN3-252ENST00000636907 ATP5EP2Q5VTU8 51 aa10□□□□□ -0.81
CLN3-252ENST00000636907 A0A087WSZ3 146 aa9.99□□□□□ -0.81
CLN3-252ENST00000636907 KRTAP1-4P0C5Y4 121 aa9.99□□□□□ -0.81
CLN3-252ENST00000636907 IMUPQ9GZP8 106 aa9.99□□□□□ -0.81
CLN3-252ENST00000636907 KRTAP10-4P60372 401 aaPredicted RBP9.99□□□□□ -0.81
CLN3-252ENST00000636907 SPINK6Q6UWN8 80 aa9.99□□□□□ -0.81
CLN3-252ENST00000636907 A0A087X002 238 aa9.97□□□□□ -0.81
CLN3-252ENST00000636907 FAM229BQ4G0N7 80 aa9.97□□□□□ -0.81
CLN3-252ENST00000636907 SCGB1A1P11684 91 aa9.96□□□□□ -0.82
CLN3-252ENST00000636907 CXCL6P80162 114 aa9.95□□□□□ -0.82
CLN3-252ENST00000636907 KRTAP13-2Q52LG2 175 aa9.95□□□□□ -0.82
CLN3-252ENST00000636907 HRCT1Q6UXD1 115 aa9.95□□□□□ -0.82
CLN3-252ENST00000636907 CDK2AP2O75956 126 aa9.93□□□□□ -0.82
CLN3-252ENST00000636907 SSBP3-AS1Q7Z2R9 100 aa9.93□□□□□ -0.82
CLN3-252ENST00000636907 BPY2O14599 106 aa9.92□□□□□ -0.82
CLN3-252ENST00000636907 HIST1H4AP62805 103 aaKnown RBP9.92□□□□□ -0.82
CLN3-252ENST00000636907 PLA2G1BP04054 148 aaKnown RBP9.91□□□□□ -0.82
CLN3-252ENST00000636907 A0A087WVE0 104 aa9.9□□□□□ -0.82
CLN3-252ENST00000636907 HSPG2P98160 4391 aa9.89□□□□□ -0.83
CLN3-252ENST00000636907 RYR1P21817 5038 aa9.89□□□□□ -0.83
CLN3-252ENST00000636907 DEFB116Q30KQ4 102 aa9.87□□□□□ -0.83
CLN3-252ENST00000636907 FAM229AH3BQW9 127 aa9.87□□□□□ -0.83
CLN3-252ENST00000636907 Q8N9L7 120 aa9.87□□□□□ -0.83
CLN3-252ENST00000636907 EPPK1P58107 5090 aaKnown RBP9.86□□□□□ -0.83
CLN3-252ENST00000636907 FAM236AA0A1B0GUQ0 79 aa9.86□□□□□ -0.83
CLN3-252ENST00000636907 FAM236BA0A1B0GV22 79 aa9.86□□□□□ -0.83
CLN3-252ENST00000636907 CD164Q04900 197 aa9.86□□□□□ -0.83
CLN3-252ENST00000636907 LINC00472Q9H8W2 130 aa9.86□□□□□ -0.83
CLN3-252ENST00000636907 DSCR10P59022 87 aa9.84□□□□□ -0.83
CLN3-252ENST00000636907 IGKV4-1P06312 121 aa9.83□□□□□ -0.84
CLN3-252ENST00000636907 SS18L2Q9UHA2 77 aa9.83□□□□□ -0.84
CLN3-252ENST00000636907 Q5VSD8 79 aa9.83□□□□□ -0.84
CLN3-252ENST00000636907 PCP4P48539 62 aa9.82□□□□□ -0.84
CLN3-252ENST00000636907 PRR26Q8N8Z3 221 aa9.82□□□□□ -0.84
CLN3-252ENST00000636907 TYMSOSQ8TAI1 123 aa9.82□□□□□ -0.84
CLN3-252ENST00000636907 PKHD1L1Q86WI1 4243 aa9.82□□□□□ -0.84
CLN3-252ENST00000636907 Q96NJ1 140 aa9.81□□□□□ -0.84
CLN3-252ENST00000636907 K7EQZ3 153 aa9.79□□□□□ -0.84
CLN3-252ENST00000636907 KRTAP17-1Q9BYP8 105 aa9.79□□□□□ -0.84
CLN3-252ENST00000636907 LCE2DQ5TA82 110 aaPredicted RBP9.78□□□□□ -0.84
CLN3-252ENST00000636907 KIAA1109Q2LD37 5005 aa9.78□□□□□ -0.84
CLN3-252ENST00000636907 J3KT08 172 aa9.74□□□□□ -0.85
CLN3-252ENST00000636907 ANAPC13Q9BS18 74 aa9.74□□□□□ -0.85
CLN3-252ENST00000636907 A8MWP4 228 aa9.73□□□□□ -0.85
CLN3-252ENST00000636907 ASB16-AS1Q495Z4 193 aa9.72□□□□□ -0.85
CLN3-252ENST00000636907 C4orf48Q5BLP8 95 aa9.72□□□□□ -0.85
CLN3-252ENST00000636907 Q5XG85 94 aa9.71□□□□□ -0.85
CLN3-252ENST00000636907 ATOX1O00244 68 aa9.71□□□□□ -0.86
CLN3-252ENST00000636907 PRR15Q8IV56 129 aa9.71□□□□□ -0.86
CLN3-252ENST00000636907 Q8N1X5 172 aa9.71□□□□□ -0.86
CLN3-252ENST00000636907 LINC00304Q8N9R0 145 aa9.71□□□□□ -0.86
CLN3-252ENST00000636907 SPINK1P00995 79 aa9.68□□□□□ -0.86
CLN3-252ENST00000636907 LIMD2Q9BT23 127 aa9.68□□□□□ -0.86
CLN3-252ENST00000636907 NDUFB1O75438 58 aa9.67□□□□□ -0.86
CLN3-252ENST00000636907 HCG22E2RYF7 251 aa9.65□□□□□ -0.86
CLN3-252ENST00000636907 C1orf195Q5TG92 126 aa9.65□□□□□ -0.86
CLN3-252ENST00000636907 SPAG11AQ6PDA7 123 aa9.65□□□□□ -0.86
CLN3-252ENST00000636907 LRP1Q07954 4544 aaKnown RBP9.63□□□□□ -0.87
CLN3-252ENST00000636907 A0A1B0GVX0 72 aa9.62□□□□□ -0.87
CLN3-252ENST00000636907 RPS29P62273 56 aaKnown RBP9.62□□□□□ -0.87
CLN3-252ENST00000636907 WFDC13Q8IUB5 93 aa9.62□□□□□ -0.87
CLN3-252ENST00000636907 IGHV6-1A0A0B4J1U7 121 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms