RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 PDE6GP18545 87 aa10.89□□□□□ -0.67
VRK3-225ENST00000601912 LOC110117498A0A087WWA1 95 aa10.88□□□□□ -0.67
VRK3-225ENST00000601912 SRRM2Q9UQ35 2752 aaKnown RBP10.88□□□□□ -0.67
VRK3-225ENST00000601912 LINC00483Q53H64 154 aa10.87□□□□□ -0.67
VRK3-225ENST00000601912 TRBV7-4A0A0J9YYF1 115 aa10.86□□□□□ -0.67
VRK3-225ENST00000601912 CDK2AP2O75956 126 aa10.85□□□□□ -0.67
VRK3-225ENST00000601912 CCKP06307 115 aa10.85□□□□□ -0.67
VRK3-225ENST00000601912 C21orf62-AS1Q17RA5 79 aa10.85□□□□□ -0.67
VRK3-225ENST00000601912 Q6ZQT0 140 aa10.85□□□□□ -0.67
VRK3-225ENST00000601912 APOBP04114 4563 aaKnown RBP10.84□□□□□ -0.67
VRK3-225ENST00000601912 FAM240AA0A1B0GVK7 77 aa10.82□□□□□ -0.68
VRK3-225ENST00000601912 ACYP1P07311 99 aa10.82□□□□□ -0.68
VRK3-225ENST00000601912 IGLV8-61A0A075B6I0 122 aa10.82□□□□□ -0.68
VRK3-225ENST00000601912 VPS13BQ7Z7G8 4022 aa10.8□□□□□ -0.68
VRK3-225ENST00000601912 SPINK6Q6UWN8 80 aa10.8□□□□□ -0.68
VRK3-225ENST00000601912 VPS25Q9BRG1 176 aa10.79□□□□□ -0.68
VRK3-225ENST00000601912 Q6JHZ5 121 aa10.79□□□□□ -0.68
VRK3-225ENST00000601912 ANAPC11Q9NYG5 84 aa10.79□□□□□ -0.68
VRK3-225ENST00000601912 IGLV9-49A0A0B4J1Y8 123 aa10.78□□□□□ -0.68
VRK3-225ENST00000601912 FAM229AH3BQW9 127 aa10.78□□□□□ -0.68
VRK3-225ENST00000601912 PLA2G1BP04054 148 aaKnown RBP10.77□□□□□ -0.69
VRK3-225ENST00000601912 C9orf153Q5TBE3 101 aa10.77□□□□□ -0.69
VRK3-225ENST00000601912 IGFL1Q6UW32 110 aa10.76□□□□□ -0.69
VRK3-225ENST00000601912 KRTAP10-4P60372 401 aaPredicted RBP10.73□□□□□ -0.69
VRK3-225ENST00000601912 FAM229BQ4G0N7 80 aa10.73□□□□□ -0.69
VRK3-225ENST00000601912 Q8NBF4 154 aa10.73□□□□□ -0.69
VRK3-225ENST00000601912 MOBPQ13875 183 aa10.72□□□□□ -0.69
VRK3-225ENST00000601912 A0A1B0GW54 56 aa10.71□□□□□ -0.69
VRK3-225ENST00000601912 A0A1W2PNM2 257 aa10.71□□□□□ -0.69
VRK3-225ENST00000601912 LINC00846Q9NV44 126 aa10.7□□□□□ -0.7
VRK3-225ENST00000601912 A0A0G2JQZ4 141 aa10.69□□□□□ -0.7
VRK3-225ENST00000601912 KRTAP1-4P0C5Y4 121 aa10.69□□□□□ -0.7
VRK3-225ENST00000601912 CDIP1Q9H305 208 aa10.69□□□□□ -0.7
VRK3-225ENST00000601912 CRYGAP11844 174 aa10.68□□□□□ -0.7
VRK3-225ENST00000601912 Q5VSD8 79 aa10.68□□□□□ -0.7
VRK3-225ENST00000601912 SSBP3-AS1Q7Z2R9 100 aa10.66□□□□□ -0.7
VRK3-225ENST00000601912 UBL5Q9BZL1 73 aa10.66□□□□□ -0.7
VRK3-225ENST00000601912 FAT1Q14517 4588 aa10.66□□□□□ -0.7
VRK3-225ENST00000601912 A0A087X002 238 aa10.66□□□□□ -0.7
VRK3-225ENST00000601912 Q6Q795 121 aa10.65□□□□□ -0.7
VRK3-225ENST00000601912 HSPG2P98160 4391 aa10.64□□□□□ -0.71
VRK3-225ENST00000601912 KRTAP13-2Q52LG2 175 aa10.61□□□□□ -0.71
VRK3-225ENST00000601912 LINC00643Q86TS7 51 aa10.61□□□□□ -0.71
VRK3-225ENST00000601912 EPPK1P58107 5090 aaKnown RBP10.61□□□□□ -0.71
VRK3-225ENST00000601912 NREPQ16612 68 aa10.6□□□□□ -0.71
VRK3-225ENST00000601912 Q6ZVQ6 151 aa10.6□□□□□ -0.71
VRK3-225ENST00000601912 Q8N1X5 172 aa10.6□□□□□ -0.71
VRK3-225ENST00000601912 A0A087WSZ3 146 aa10.59□□□□□ -0.71
VRK3-225ENST00000601912 RYR1P21817 5038 aa10.58□□□□□ -0.72
VRK3-225ENST00000601912 TRBV7-7A0A0K0K1E9 115 aa10.57□□□□□ -0.72
VRK3-225ENST00000601912 HRCT1Q6UXD1 115 aa10.57□□□□□ -0.72
VRK3-225ENST00000601912 TYMSOSQ8TAI1 123 aa10.57□□□□□ -0.72
VRK3-225ENST00000601912 CD164Q04900 197 aa10.57□□□□□ -0.72
VRK3-225ENST00000601912 SIGMAR1Q99720 223 aa10.56□□□□□ -0.72
VRK3-225ENST00000601912 PRR26Q8N8Z3 221 aa10.55□□□□□ -0.72
VRK3-225ENST00000601912 MT-ATP8P03928 68 aa10.53□□□□□ -0.72
VRK3-225ENST00000601912 ATP5EP2Q5VTU8 51 aa10.53□□□□□ -0.72
VRK3-225ENST00000601912 KIAA1109Q2LD37 5005 aa10.52□□□□□ -0.72
VRK3-225ENST00000601912 SS18L2Q9UHA2 77 aa10.52□□□□□ -0.73
VRK3-225ENST00000601912 C4orf48Q5BLP8 95 aa10.5□□□□□ -0.73
VRK3-225ENST00000601912 KRTAP17-1Q9BYP8 105 aa10.5□□□□□ -0.73
VRK3-225ENST00000601912 IGKV3D-7A0A0C4DH55 119 aa10.49□□□□□ -0.73
VRK3-225ENST00000601912 BPY2O14599 106 aa10.47□□□□□ -0.73
VRK3-225ENST00000601912 CXCL6P80162 114 aa10.47□□□□□ -0.73
VRK3-225ENST00000601912 PKHD1L1Q86WI1 4243 aa10.46□□□□□ -0.73
VRK3-225ENST00000601912 LINC00304Q8N9R0 145 aa10.44□□□□□ -0.74
VRK3-225ENST00000601912 SPAG11AQ6PDA7 123 aa10.44□□□□□ -0.74
VRK3-225ENST00000601912 IMUPQ9GZP8 106 aa10.44□□□□□ -0.74
VRK3-225ENST00000601912 SPINK1P00995 79 aa10.43□□□□□ -0.74
VRK3-225ENST00000601912 LINC00472Q9H8W2 130 aa10.42□□□□□ -0.74
VRK3-225ENST00000601912 LIMD2Q9BT23 127 aa10.41□□□□□ -0.74
VRK3-225ENST00000601912 DEFB116Q30KQ4 102 aa10.4□□□□□ -0.74
VRK3-225ENST00000601912 Q5XG85 94 aa10.4□□□□□ -0.74
VRK3-225ENST00000601912 J3KT08 172 aa10.39□□□□□ -0.75
VRK3-225ENST00000601912 HIST1H4AP62805 103 aaKnown RBP10.39□□□□□ -0.75
VRK3-225ENST00000601912 ASB16-AS1Q495Z4 193 aa10.38□□□□□ -0.75
VRK3-225ENST00000601912 RPS29P62273 56 aaKnown RBP10.37□□□□□ -0.75
VRK3-225ENST00000601912 Q96NJ1 140 aa10.36□□□□□ -0.75
VRK3-225ENST00000601912 IGKV4-1P06312 121 aa10.34□□□□□ -0.75
VRK3-225ENST00000601912 DSCR10P59022 87 aa10.34□□□□□ -0.75
VRK3-225ENST00000601912 KRTAP10-8P60410 259 aa10.34□□□□□ -0.75
VRK3-225ENST00000601912 Q8N9L7 120 aa10.32□□□□□ -0.76
VRK3-225ENST00000601912 FLG2Q5D862 2391 aaPredicted RBP10.31□□□□□ -0.76
VRK3-225ENST00000601912 A8MWP4 228 aa10.31□□□□□ -0.76
VRK3-225ENST00000601912 NDUFB1O75438 58 aa10.31□□□□□ -0.76
VRK3-225ENST00000601912 A0A087WVE0 104 aa10.3□□□□□ -0.76
VRK3-225ENST00000601912 K7EQZ3 153 aa10.3□□□□□ -0.76
VRK3-225ENST00000601912 KRTAP4-5Q9BYR2 181 aa10.3□□□□□ -0.76
VRK3-225ENST00000601912 BIRC6Q9NR09 4857 aa10.29□□□□□ -0.76
VRK3-225ENST00000601912 C1orf195Q5TG92 126 aa10.28□□□□□ -0.76
VRK3-225ENST00000601912 OXTP01178 125 aa10.28□□□□□ -0.76
VRK3-225ENST00000601912 SCGB1A1P11684 91 aa10.28□□□□□ -0.76
VRK3-225ENST00000601912 PRR15Q8IV56 129 aa10.27□□□□□ -0.77
VRK3-225ENST00000601912 LRP1Q07954 4544 aaKnown RBP10.24□□□□□ -0.77
VRK3-225ENST00000601912 FAM236AA0A1B0GUQ0 79 aa10.24□□□□□ -0.77
VRK3-225ENST00000601912 FAM236BA0A1B0GV22 79 aa10.24□□□□□ -0.77
VRK3-225ENST00000601912 A0A1B0GVX0 72 aa10.21□□□□□ -0.78
VRK3-225ENST00000601912 MT1HL1P0DM35 61 aa10.21□□□□□ -0.78
VRK3-225ENST00000601912 FAT3Q8TDW7 4589 aa10.2□□□□□ -0.78
VRK3-225ENST00000601912 TNXBP22105 4242 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms