RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 LINC00483Q53H64 154 aa10.56□□□□□ -0.72
SYNE3-204ENST00000555759 RPL37P61927 97 aaKnown RBP10.55□□□□□ -0.72
SYNE3-204ENST00000555759 DNAH12Q6ZR08 3092 aa10.53□□□□□ -0.72
SYNE3-204ENST00000555759 H1FX-AS1Q4G0G2 97 aa10.51□□□□□ -0.73
SYNE3-204ENST00000555759 SMR3BP02814 79 aaPredicted RBP10.51□□□□□ -0.73
SYNE3-204ENST00000555759 MGAM2Q2M2H8 2515 aa10.49□□□□□ -0.73
SYNE3-204ENST00000555759 S4R3F8 94 aa10.46□□□□□ -0.74
SYNE3-204ENST00000555759 USP24Q9UPU5 2620 aa10.45□□□□□ -0.74
SYNE3-204ENST00000555759 CAMK2N1Q7Z7J9 78 aa10.45□□□□□ -0.74
SYNE3-204ENST00000555759 A0A087X002 238 aa10.41□□□□□ -0.74
SYNE3-204ENST00000555759 J3QL48 77 aa10.4□□□□□ -0.74
SYNE3-204ENST00000555759 Q6ZSA8 131 aa10.39□□□□□ -0.75
SYNE3-204ENST00000555759 KRTAP25-1Q3LHN0 102 aa10.38□□□□□ -0.75
SYNE3-204ENST00000555759 CEP350Q5VT06 3117 aa10.37□□□□□ -0.75
SYNE3-204ENST00000555759 KRTAP16-1A8MUX0 517 aa10.33□□□□□ -0.76
SYNE3-204ENST00000555759 FLNAP21333 2647 aaKnown RBP10.31□□□□□ -0.76
SYNE3-204ENST00000555759 KRTAP1-5Q9BYS1 174 aa10.31□□□□□ -0.76
SYNE3-204ENST00000555759 ATRQ13535 2644 aa10.3□□□□□ -0.76
SYNE3-204ENST00000555759 MAST4O15021 2626 aa10.28□□□□□ -0.76
SYNE3-204ENST00000555759 HELZ2Q9BYK8 2649 aaKnown RBP10.28□□□□□ -0.76
SYNE3-204ENST00000555759 A0A0C4DFX4 3053 aa10.27□□□□□ -0.77
SYNE3-204ENST00000555759 A8MU10 97 aa10.27□□□□□ -0.77
SYNE3-204ENST00000555759 R4GN34 69 aa10.24□□□□□ -0.77
SYNE3-204ENST00000555759 ADM2Q7Z4H4 148 aa10.23□□□□□ -0.77
SYNE3-204ENST00000555759 NOTCH2NLQ7Z3S9 236 aa10.2□□□□□ -0.78
SYNE3-204ENST00000555759 PANO1I0J062 215 aa10.2□□□□□ -0.78
SYNE3-204ENST00000555759 ITPR3Q14573 2671 aa10.18□□□□□ -0.78
SYNE3-204ENST00000555759 CHD7Q9P2D1 2997 aa10.17□□□□□ -0.78
SYNE3-204ENST00000555759 C5orf42Q9H799 3197 aa10.15□□□□□ -0.79
SYNE3-204ENST00000555759 CFAP46Q8IYW2 2715 aa10.14□□□□□ -0.79
SYNE3-204ENST00000555759 KRTAP7-1Q8IUC3 87 aa10.08□□□□□ -0.8
SYNE3-204ENST00000555759 CENPEQ02224 2701 aa10.08□□□□□ -0.8
SYNE3-204ENST00000555759 RANBP2P49792 3224 aaKnown RBP10.06□□□□□ -0.8
SYNE3-204ENST00000555759 M0QZ58 72 aa10.06□□□□□ -0.8
SYNE3-204ENST00000555759 PCNTO95613 3336 aa10.05□□□□□ -0.8
SYNE3-204ENST00000555759 AKAP13Q12802 2813 aa10.04□□□□□ -0.8
SYNE3-204ENST00000555759 CHD6Q8TD26 2715 aa10.04□□□□□ -0.8
SYNE3-204ENST00000555759 UNC79Q9P2D8 2635 aa10.03□□□□□ -0.8
SYNE3-204ENST00000555759 NDUFAF8A1L188 74 aa10.02□□□□□ -0.81
SYNE3-204ENST00000555759 KRTAP11-1Q8IUC1 163 aa10.01□□□□□ -0.81
SYNE3-204ENST00000555759 CHD9Q3L8U1 2897 aa10.01□□□□□ -0.81
SYNE3-204ENST00000555759 GCN1Q92616 2671 aaKnown RBP10.01□□□□□ -0.81
SYNE3-204ENST00000555759 RPS29P62273 56 aaKnown RBP9.99□□□□□ -0.81
SYNE3-204ENST00000555759 KRTAP13-1Q8IUC0 172 aa9.99□□□□□ -0.81
SYNE3-204ENST00000555759 CFAP54Q96N23 3096 aa9.98□□□□□ -0.81
SYNE3-204ENST00000555759 NBEAL1Q6ZS30 2694 aa9.98□□□□□ -0.81
SYNE3-204ENST00000555759 SETXQ7Z333 2677 aaKnown RBP9.96□□□□□ -0.82
SYNE3-204ENST00000555759 KRTAP10-1P60331 282 aa9.96□□□□□ -0.82
SYNE3-204ENST00000555759 TEP1Q99973 2627 aaKnown RBP9.94□□□□□ -0.82
SYNE3-204ENST00000555759 DMBT1Q9UGM3 2413 aaPredicted RBP9.91□□□□□ -0.82
SYNE3-204ENST00000555759 A8MUU9 505 aa9.91□□□□□ -0.82
SYNE3-204ENST00000555759 LAMA3Q16787 3333 aa9.91□□□□□ -0.82
SYNE3-204ENST00000555759 HTTP42858 3142 aa9.91□□□□□ -0.82
SYNE3-204ENST00000555759 SEC61BP60468 96 aaKnown RBP9.9□□□□□ -0.82
SYNE3-204ENST00000555759 KRTAP10-2P60368 255 aa9.9□□□□□ -0.82
SYNE3-204ENST00000555759 MKI67P46013 3256 aaKnown RBP9.85□□□□□ -0.83
SYNE3-204ENST00000555759 FLG2Q5D862 2391 aaPredicted RBP9.83□□□□□ -0.84
SYNE3-204ENST00000555759 STAB1Q9NY15 2570 aa9.83□□□□□ -0.84
SYNE3-204ENST00000555759 MGAQ8IWI9 3026 aa9.82□□□□□ -0.84
SYNE3-204ENST00000555759 TRANK1O15050 2925 aa9.82□□□□□ -0.84
SYNE3-204ENST00000555759 Q6ZRN7 208 aaPredicted RBP9.81□□□□□ -0.84
SYNE3-204ENST00000555759 PLAC4Q8WY50 150 aa9.8□□□□□ -0.84
SYNE3-204ENST00000555759 TEX15Q9BXT5 2789 aa9.8□□□□□ -0.84
SYNE3-204ENST00000555759 BRCA2P51587 3418 aa9.79□□□□□ -0.84
SYNE3-204ENST00000555759 ZNF292O60281 2723 aa9.79□□□□□ -0.84
SYNE3-204ENST00000555759 NBEAL2Q6ZNJ1 2754 aa9.77□□□□□ -0.84
SYNE3-204ENST00000555759 M0R2T5 61 aa9.77□□□□□ -0.85
SYNE3-204ENST00000555759 NOTCH1P46531 2555 aa9.76□□□□□ -0.85
SYNE3-204ENST00000555759 KRTAP13-2Q52LG2 175 aa9.76□□□□□ -0.85
SYNE3-204ENST00000555759 COL6A5A8TX70 2615 aa9.72□□□□□ -0.85
SYNE3-204ENST00000555759 PRUNE2Q8WUY3 3088 aa9.7□□□□□ -0.86
SYNE3-204ENST00000555759 BAHCC1Q9P281 2608 aa9.69□□□□□ -0.86
SYNE3-204ENST00000555759 WDFY4Q6ZS81 3184 aa9.69□□□□□ -0.86
SYNE3-204ENST00000555759 C20orf166-AS1Q96NR2 134 aa9.69□□□□□ -0.86
SYNE3-204ENST00000555759 Q5VSD8 79 aa9.68□□□□□ -0.86
SYNE3-204ENST00000555759 DSPP15924 2871 aaKnown RBP9.64□□□□□ -0.87
SYNE3-204ENST00000555759 LAMA2P24043 3122 aaKnown RBP9.6□□□□□ -0.87
SYNE3-204ENST00000555759 FRYQ5TBA9 3013 aa9.59□□□□□ -0.87
SYNE3-204ENST00000555759 H0YAA0 97 aa9.58□□□□□ -0.88
SYNE3-204ENST00000555759 IGSF10Q6WRI0 2623 aa9.56□□□□□ -0.88
SYNE3-204ENST00000555759 XIRP2A4UGR9 3374 aa9.55□□□□□ -0.88
SYNE3-204ENST00000555759 PP632Q6XCG6 107 aa9.52□□□□□ -0.88
SYNE3-204ENST00000555759 ITPR1Q14643 2758 aa9.52□□□□□ -0.88
SYNE3-204ENST00000555759 TRIOO75962 3097 aa9.52□□□□□ -0.89
SYNE3-204ENST00000555759 UNC80Q8N2C7 3258 aa9.51□□□□□ -0.89
SYNE3-204ENST00000555759 MAP1AP78559 2803 aaPredicted RBP9.5□□□□□ -0.89
SYNE3-204ENST00000555759 STAB2Q8WWQ8 2551 aa9.49□□□□□ -0.89
SYNE3-204ENST00000555759 TNP1P09430 55 aa9.46□□□□□ -0.9
SYNE3-204ENST00000555759 C10orf95Q9H7T3 257 aa9.45□□□□□ -0.9
SYNE3-204ENST00000555759 P0C880 135 aa9.45□□□□□ -0.9
SYNE3-204ENST00000555759 KALRNO60229 2985 aa9.43□□□□□ -0.9
SYNE3-204ENST00000555759 UBR5O95071 2799 aaPredicted RBP9.4□□□□□ -0.9
SYNE3-204ENST00000555759 NSD1Q96L73 2696 aaPredicted RBP9.4□□□□□ -0.91
SYNE3-204ENST00000555759 NBEAQ8NFP9 2946 aa9.37□□□□□ -0.91
SYNE3-204ENST00000555759 CDH23Q9H251 3354 aa9.36□□□□□ -0.91
SYNE3-204ENST00000555759 VPS13AQ96RL7 3174 aa9.35□□□□□ -0.91
SYNE3-204ENST00000555759 APCP25054 2843 aa9.33□□□□□ -0.92
SYNE3-204ENST00000555759 FREM2Q5SZK8 3169 aa9.33□□□□□ -0.92
SYNE3-204ENST00000555759 KRTAP13-3Q3SY46 172 aa9.27□□□□□ -0.93
SYNE3-204ENST00000555759 KRTAP1-4P0C5Y4 121 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms