RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 KRTAP1-4P0C5Y4 121 aa8.68□□□□□ -1.02
SHMT2-210ENST00000553950 ANKRD29Q8N6D5 301 aa8.68□□□□□ -1.02
SHMT2-210ENST00000553950 F8W1H4 67 aa8.67□□□□□ -1.02
SHMT2-210ENST00000553950 PKHD1L1Q86WI1 4243 aa8.66□□□□□ -1.02
SHMT2-210ENST00000553950 JMJD7-PLA2G4BH0Y9G9 81 aa8.66□□□□□ -1.02
SHMT2-210ENST00000553950 NDUFV3P56181 108 aaKnown RBP8.66□□□□□ -1.02
SHMT2-210ENST00000553950 Q8NBF4 154 aa8.66□□□□□ -1.02
SHMT2-210ENST00000553950 LINC01600Q96MT4 127 aa8.66□□□□□ -1.02
SHMT2-210ENST00000553950 C21orf62-AS1Q17RA5 79 aa8.65□□□□□ -1.02
SHMT2-210ENST00000553950 C9orf153Q5TBE3 101 aa8.65□□□□□ -1.02
SHMT2-210ENST00000553950 SMIM29Q86T20 159 aa8.64□□□□□ -1.03
SHMT2-210ENST00000553950 Q6JHZ5 121 aa8.63□□□□□ -1.03
SHMT2-210ENST00000553950 MTURNQ8N3F0 131 aa8.63□□□□□ -1.03
SHMT2-210ENST00000553950 PRO0461Q9UI25 63 aa8.63□□□□□ -1.03
SHMT2-210ENST00000553950 IGLV8-61A0A075B6I0 122 aa8.62□□□□□ -1.03
SHMT2-210ENST00000553950 IGLV9-49A0A0B4J1Y8 123 aa8.62□□□□□ -1.03
SHMT2-210ENST00000553950 C3orf22Q8N5N4 141 aa8.62□□□□□ -1.03
SHMT2-210ENST00000553950 MOBPQ13875 183 aa8.61□□□□□ -1.03
SHMT2-210ENST00000553950 SSBP3-AS1Q7Z2R9 100 aa8.61□□□□□ -1.03
SHMT2-210ENST00000553950 KRTAP17-1Q9BYP8 105 aa8.61□□□□□ -1.03
SHMT2-210ENST00000553950 HERC2O95714 4834 aa8.6□□□□□ -1.03
SHMT2-210ENST00000553950 SRRM2Q9UQ35 2752 aaKnown RBP8.6□□□□□ -1.03
SHMT2-210ENST00000553950 OXTP01178 125 aa8.6□□□□□ -1.03
SHMT2-210ENST00000553950 ANAPC11Q9NYG5 84 aa8.6□□□□□ -1.03
SHMT2-210ENST00000553950 A0A087X002 238 aa8.59□□□□□ -1.03
SHMT2-210ENST00000553950 RBM3P98179 157 aaKnown RBP8.59□□□□□ -1.03
SHMT2-210ENST00000553950 TYMSOSQ8TAI1 123 aa8.59□□□□□ -1.03
SHMT2-210ENST00000553950 DSCR8Q96T75 97 aa8.59□□□□□ -1.03
SHMT2-210ENST00000553950 PDE6GP18545 87 aa8.58□□□□□ -1.04
SHMT2-210ENST00000553950 SMCPP49901 116 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-210ENST00000553950 TEN1Q86WV5 123 aa8.57□□□□□ -1.04
SHMT2-210ENST00000553950 KRTAP13-2Q52LG2 175 aa8.56□□□□□ -1.04
SHMT2-210ENST00000553950 PRR26Q8N8Z3 221 aa8.56□□□□□ -1.04
SHMT2-210ENST00000553950 OBSCN-AS1Q96MR7 158 aa8.56□□□□□ -1.04
SHMT2-210ENST00000553950 LOC110117498A0A087WWA1 95 aa8.54□□□□□ -1.04
SHMT2-210ENST00000553950 TRBV7-4A0A0J9YYF1 115 aa8.54□□□□□ -1.04
SHMT2-210ENST00000553950 KRTAP4-5Q9BYR2 181 aa8.54□□□□□ -1.04
SHMT2-210ENST00000553950 FLG2Q5D862 2391 aaPredicted RBP8.53□□□□□ -1.04
SHMT2-210ENST00000553950 A0A1B0GV72 72 aa8.53□□□□□ -1.04
SHMT2-210ENST00000553950 CD164Q04900 197 aa8.53□□□□□ -1.04
SHMT2-210ENST00000553950 SPAG11AQ6PDA7 123 aa8.53□□□□□ -1.04
SHMT2-210ENST00000553950 IGFL1Q6UW32 110 aa8.53□□□□□ -1.04
SHMT2-210ENST00000553950 C4orf48Q5BLP8 95 aa8.52□□□□□ -1.05
SHMT2-210ENST00000553950 KRTAP29-1A8MX34 341 aaPredicted RBP8.51□□□□□ -1.05
SHMT2-210ENST00000553950 ETDBQ3ZM63 59 aa8.51□□□□□ -1.05
SHMT2-210ENST00000553950 LINC00304Q8N9R0 145 aa8.51□□□□□ -1.05
SHMT2-210ENST00000553950 C14orf132Q9NPU4 83 aa8.51□□□□□ -1.05
SHMT2-210ENST00000553950 A0A1B0GW54 56 aa8.5□□□□□ -1.05
SHMT2-210ENST00000553950 Q6Q795 121 aa8.5□□□□□ -1.05
SHMT2-210ENST00000553950 CCKP06307 115 aa8.48□□□□□ -1.05
SHMT2-210ENST00000553950 RPS29P62273 56 aaKnown RBP8.48□□□□□ -1.05
SHMT2-210ENST00000553950 Q6ZQT0 140 aa8.48□□□□□ -1.05
SHMT2-210ENST00000553950 SPINK1P00995 79 aa8.47□□□□□ -1.05
SHMT2-210ENST00000553950 KRTAP10-8P60410 259 aa8.47□□□□□ -1.05
SHMT2-210ENST00000553950 LIMD2Q9BT23 127 aa8.47□□□□□ -1.05
SHMT2-210ENST00000553950 SS18L2Q9UHA2 77 aa8.46□□□□□ -1.06
SHMT2-210ENST00000553950 VPS25Q9BRG1 176 aa8.45□□□□□ -1.06
SHMT2-210ENST00000553950 TRBV7-7A0A0K0K1E9 115 aa8.44□□□□□ -1.06
SHMT2-210ENST00000553950 J3QL48 77 aa8.43□□□□□ -1.06
SHMT2-210ENST00000553950 FAT3Q8TDW7 4589 aa8.42□□□□□ -1.06
SHMT2-210ENST00000553950 ABCA13Q86UQ4 5058 aa8.42□□□□□ -1.06
SHMT2-210ENST00000553950 A0A1W2PNM2 257 aa8.42□□□□□ -1.06
SHMT2-210ENST00000553950 J3QR89 54 aa8.42□□□□□ -1.06
SHMT2-210ENST00000553950 MT1HL1P0DM35 61 aa8.42□□□□□ -1.06
SHMT2-210ENST00000553950 Q5XG85 94 aa8.41□□□□□ -1.06
SHMT2-210ENST00000553950 HRCT1Q6UXD1 115 aa8.4□□□□□ -1.06
SHMT2-210ENST00000553950 A0A0G2JQZ4 141 aa8.39□□□□□ -1.07
SHMT2-210ENST00000553950 MYCBP2O75592 4640 aa8.39□□□□□ -1.07
SHMT2-210ENST00000553950 A0A087WSZ3 146 aa8.38□□□□□ -1.07
SHMT2-210ENST00000553950 FAM240AA0A1B0GVK7 77 aa8.38□□□□□ -1.07
SHMT2-210ENST00000553950 ACYP1P07311 99 aa8.38□□□□□ -1.07
SHMT2-210ENST00000553950 LRP1Q07954 4544 aaKnown RBP8.38□□□□□ -1.07
SHMT2-210ENST00000553950 TNXBP22105 4242 aa8.37□□□□□ -1.07
SHMT2-210ENST00000553950 ASB16-AS1Q495Z4 193 aa8.36□□□□□ -1.07
SHMT2-210ENST00000553950 UBL5Q9BZL1 73 aa8.33□□□□□ -1.08
SHMT2-210ENST00000553950 K7ERU9 68 aa8.32□□□□□ -1.08
SHMT2-210ENST00000553950 DMBT1Q9UGM3 2413 aaPredicted RBP8.3□□□□□ -1.08
SHMT2-210ENST00000553950 NREPQ16612 68 aa8.3□□□□□ -1.08
SHMT2-210ENST00000553950 PCLOQ9Y6V0 5065 aa8.29□□□□□ -1.08
SHMT2-210ENST00000553950 J3KT08 172 aa8.28□□□□□ -1.08
SHMT2-210ENST00000553950 FP248Q71RG6 208 aaPredicted RBP8.27□□□□□ -1.09
SHMT2-210ENST00000553950 LINC00846Q9NV44 126 aa8.27□□□□□ -1.09
SHMT2-210ENST00000553950 Q6ZVQ6 151 aa8.25□□□□□ -1.09
SHMT2-210ENST00000553950 C1orf195Q5TG92 126 aa8.24□□□□□ -1.09
SHMT2-210ENST00000553950 ATP5EP2Q5VTU8 51 aa8.23□□□□□ -1.09
SHMT2-210ENST00000553950 LINC00472Q9H8W2 130 aa8.23□□□□□ -1.09
SHMT2-210ENST00000553950 SIGMAR1Q99720 223 aa8.22□□□□□ -1.09
SHMT2-210ENST00000553950 Q96NJ1 140 aa8.21□□□□□ -1.1
SHMT2-210ENST00000553950 BPY2O14599 106 aa8.2□□□□□ -1.1
SHMT2-210ENST00000553950 IGKV4-1P06312 121 aa8.2□□□□□ -1.1
SHMT2-210ENST00000553950 NDUFB1O75438 58 aa8.18□□□□□ -1.1
SHMT2-210ENST00000553950 CXCL6P80162 114 aa8.18□□□□□ -1.1
SHMT2-210ENST00000553950 RETNLBQ9BQ08 111 aa8.18□□□□□ -1.1
SHMT2-210ENST00000553950 LINC00643Q86TS7 51 aa8.17□□□□□ -1.1
SHMT2-210ENST00000553950 A8MWP4 228 aa8.15□□□□□ -1.1
SHMT2-210ENST00000553950 PRR4Q16378 134 aa8.14□□□□□ -1.11
SHMT2-210ENST00000553950 IGLV7-46A0A075B6I9 117 aa8.13□□□□□ -1.11
SHMT2-210ENST00000553950 DEFB116Q30KQ4 102 aa8.13□□□□□ -1.11
SHMT2-210ENST00000553950 A0A1B0GVX0 72 aa8.12□□□□□ -1.11
SHMT2-210ENST00000553950 C8orf87E5RJ46 101 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms