RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 NISCHQ9Y2I1 1504 aa34.09■■■■□ 3.05
SHMT2-210ENST00000553950 CCDC180Q9P1Z9 1646 aa30.23■■■□□ 2.43
SHMT2-210ENST00000553950 ABCC9O60706 1549 aa28.66■■■□□ 2.18
SHMT2-210ENST00000553950 ZCCHC6Q5VYS8 1495 aaKnown RBP28.58■■■□□ 2.17
SHMT2-210ENST00000553950 DCAF1Q9Y4B6 1507 aa28.35■■■□□ 2.13
SHMT2-210ENST00000553950 MYO15BQ96JP2 1530 aa28.25■■■□□ 2.11
SHMT2-210ENST00000553950 NACADO15069 1562 aa28.17■■■□□ 2.1
SHMT2-210ENST00000553950 RB1CC1Q8TDY2 1594 aa28.05■■■□□ 2.08
SHMT2-210ENST00000553950 DCAF8L2P0C7V8 631 aa27.97■■■□□ 2.07
SHMT2-210ENST00000553950 SCRIBQ14160 1630 aa27.46■■□□□ 1.99
SHMT2-210ENST00000553950 UNC13AQ9UPW8 1703 aa27.44■■□□□ 1.98
SHMT2-210ENST00000553950 SHROOM4Q9ULL8 1493 aa27.12■■□□□ 1.93
SHMT2-210ENST00000553950 BICRAQ9NZM4 1560 aa27.05■■□□□ 1.92
SHMT2-210ENST00000553950 PABPN1Q86U42 306 aaKnown RBP eCLIP26.75■■□□□ 1.87
SHMT2-210ENST00000553950 BAZ1AQ9NRL2 1556 aaPredicted RBP26.46■■□□□ 1.83
SHMT2-210ENST00000553950 SMARCA4P51532 1647 aa26.37■■□□□ 1.81
SHMT2-210ENST00000553950 CECR2Q9BXF3 1484 aa26.35■■□□□ 1.81
SHMT2-210ENST00000553950 EIF4G1Q04637 1599 aaKnown RBP26.34■■□□□ 1.81
SHMT2-210ENST00000553950 MROH2BQ7Z745 1585 aa26.21■■□□□ 1.79
SHMT2-210ENST00000553950 PEG3Q9GZU2 1588 aa26.14■■□□□ 1.78
SHMT2-210ENST00000553950 RSF1Q96T23 1441 aaPredicted RBP26.13■■□□□ 1.77
SHMT2-210ENST00000553950 SMARCA2P51531 1590 aa26.11■■□□□ 1.77
SHMT2-210ENST00000553950 CC2D2AQ9P2K1 1620 aa26.06■■□□□ 1.76
SHMT2-210ENST00000553950 WIZO95785 1651 aa26.02■■□□□ 1.76
SHMT2-210ENST00000553950 ATAD2BQ9ULI0 1458 aa25.97■■□□□ 1.75
SHMT2-210ENST00000553950 HMGXB3Q12766 1538 aa25.94■■□□□ 1.74
SHMT2-210ENST00000553950 NCAPD3P42695 1498 aa25.87■■□□□ 1.73
SHMT2-210ENST00000553950 BAZ1BQ9UIG0 1483 aaKnown RBP25.86■■□□□ 1.73
SHMT2-210ENST00000553950 TOP2AP11388 1531 aaKnown RBP25.86■■□□□ 1.73
SHMT2-210ENST00000553950 SUPT5HO00267 1087 aaKnown RBP25.82■■□□□ 1.72
SHMT2-210ENST00000553950 DNAJC5BQ9UF47 199 aa25.48■■□□□ 1.67
SHMT2-210ENST00000553950 CCDC88BA6NC98 1476 aa25.41■■□□□ 1.66
SHMT2-210ENST00000553950 PRDM2Q13029 1718 aa25.29■■□□□ 1.64
SHMT2-210ENST00000553950 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
SHMT2-210ENST00000553950 CFTRP13569 1480 aa25.15■■□□□ 1.62
SHMT2-210ENST00000553950 CADPSQ9ULU8 1353 aa25.12■■□□□ 1.61
SHMT2-210ENST00000553950 NESP48681 1621 aa24.97■■□□□ 1.59
SHMT2-210ENST00000553950 PDS5BQ9NTI5 1447 aa24.95■■□□□ 1.58
SHMT2-210ENST00000553950 FANCD2Q9BXW9 1451 aa24.88■■□□□ 1.57
SHMT2-210ENST00000553950 KIF21AQ7Z4S6 1674 aa24.87■■□□□ 1.57
SHMT2-210ENST00000553950 CEP164Q9UPV0 1460 aa24.85■■□□□ 1.57
SHMT2-210ENST00000553950 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
SHMT2-210ENST00000553950 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
SHMT2-210ENST00000553950 WRNQ14191 1432 aaPredicted RBP eCLIP24.69■■□□□ 1.54
SHMT2-210ENST00000553950 BIVM-ERCC5R4GMW8 1640 aa24.68■■□□□ 1.54
SHMT2-210ENST00000553950 DNMBPQ6XZF7 1577 aa24.67■■□□□ 1.54
SHMT2-210ENST00000553950 MRC2Q9UBG0 1479 aa24.66■■□□□ 1.54
SHMT2-210ENST00000553950 TOP2BQ02880 1626 aa24.64■■□□□ 1.54
SHMT2-210ENST00000553950 THOC2Q8NI27 1593 aaKnown RBP24.63■■□□□ 1.53
SHMT2-210ENST00000553950 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
SHMT2-210ENST00000553950 WDR62O43379 1518 aa24.59■■□□□ 1.53
SHMT2-210ENST00000553950 CUX1P39880 1505 aa24.59■■□□□ 1.53
SHMT2-210ENST00000553950 TOPBP1Q92547 1522 aa24.56■■□□□ 1.52
SHMT2-210ENST00000553950 URB2Q14146 1524 aaKnown RBP24.56■■□□□ 1.52
SHMT2-210ENST00000553950 CHIC1Q5VXU3 224 aa24.49■■□□□ 1.51
SHMT2-210ENST00000553950 TRIM41Q8WV44 630 aa24.44■■□□□ 1.5
SHMT2-210ENST00000553950 FGD5Q6ZNL6 1462 aa24.42■■□□□ 1.5
SHMT2-210ENST00000553950 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
SHMT2-210ENST00000553950 WDR97A6NE52 1622 aa24.33■■□□□ 1.49
SHMT2-210ENST00000553950 CUX2O14529 1486 aa24.32■■□□□ 1.48
SHMT2-210ENST00000553950 IFT140Q96RY7 1462 aa24.29■■□□□ 1.48
SHMT2-210ENST00000553950 TARBP1Q13395 1621 aaKnown RBP24.28■■□□□ 1.48
SHMT2-210ENST00000553950 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
SHMT2-210ENST00000553950 SOGA1O94964 1423 aa24.25■■□□□ 1.47
SHMT2-210ENST00000553950 EEA1Q15075 1411 aa24.2■■□□□ 1.46
SHMT2-210ENST00000553950 RAD54L2Q9Y4B4 1467 aa24.17■■□□□ 1.46
SHMT2-210ENST00000553950 ABCA5Q8WWZ7 1642 aa24.16■■□□□ 1.46
SHMT2-210ENST00000553950 KIF27Q86VH2 1401 aa24.15■■□□□ 1.46
SHMT2-210ENST00000553950 EIF4G3O43432 1585 aaKnown RBP24.1■■□□□ 1.45
SHMT2-210ENST00000553950 PBRM1Q86U86 1689 aa24.08■■□□□ 1.45
SHMT2-210ENST00000553950 GAPVD1Q14C86 1478 aa24.03■■□□□ 1.44
SHMT2-210ENST00000553950 ERICH3Q5RHP9 1530 aa24.03■■□□□ 1.44
SHMT2-210ENST00000553950 CUL7Q14999 1698 aa24.02■■□□□ 1.44
SHMT2-210ENST00000553950 ZNF608Q9ULD9 1512 aaPredicted RBP23.99■■□□□ 1.43
SHMT2-210ENST00000553950 GRIN2BQ13224 1484 aa23.97■■□□□ 1.43
SHMT2-210ENST00000553950 TDRD9Q8NDG6 1382 aaKnown RBP23.95■■□□□ 1.42
SHMT2-210ENST00000553950 RUSC2Q8N2Y8 1516 aa23.94■■□□□ 1.42
SHMT2-210ENST00000553950 AQRO60306 1485 aaKnown RBP eCLIP23.91■■□□□ 1.425e-8■■■■□ 22.1
SHMT2-210ENST00000553950 KIF21BO75037 1637 aa23.91■■□□□ 1.42
SHMT2-210ENST00000553950 MAGI1Q96QZ7 1491 aaPredicted RBP23.89■■□□□ 1.42
SHMT2-210ENST00000553950 ADAMTS12P58397 1594 aa23.88■■□□□ 1.41
SHMT2-210ENST00000553950 CSRNP3Q8WYN3 585 aa23.85■■□□□ 1.41
SHMT2-210ENST00000553950 IGF1RP08069 1367 aa23.83■■□□□ 1.41
SHMT2-210ENST00000553950 SNAPC4Q5SXM2 1469 aa23.82■■□□□ 1.4
SHMT2-210ENST00000553950 PRXQ9BXM0 1461 aa23.81■■□□□ 1.4
SHMT2-210ENST00000553950 FAM9AQ8IZU1 332 aaPredicted RBP23.8■■□□□ 1.4
SHMT2-210ENST00000553950 FHAD1B1AJZ9 1412 aa23.79■■□□□ 1.4
SHMT2-210ENST00000553950 GOLGA3Q08378 1498 aa23.76■■□□□ 1.39
SHMT2-210ENST00000553950 RAPGEF2Q9Y4G8 1499 aa23.76■■□□□ 1.39
SHMT2-210ENST00000553950 CARMIL1Q5VZK9 1371 aa23.76■■□□□ 1.39
SHMT2-210ENST00000553950 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
SHMT2-210ENST00000553950 CHD1O14646 1710 aa23.69■■□□□ 1.38
SHMT2-210ENST00000553950 CTTNBP2Q8WZ74 1663 aa23.67■■□□□ 1.38
SHMT2-210ENST00000553950 GRIN2AQ12879 1464 aa23.66■■□□□ 1.38
SHMT2-210ENST00000553950 CHMP7Q8WUX9 453 aaPredicted RBP23.56■■□□□ 1.36
SHMT2-210ENST00000553950 NUP160Q12769 1436 aa23.51■■□□□ 1.35
SHMT2-210ENST00000553950 CEP170Q5SW79 1584 aa23.51■■□□□ 1.35
SHMT2-210ENST00000553950 TNIKQ9UKE5 1360 aa23.51■■□□□ 1.35
SHMT2-210ENST00000553950 IQGAP2Q13576 1575 aa23.48■■□□□ 1.35
SHMT2-210ENST00000553950 UBTFP17480 764 aaKnown RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms