RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 BRCA2P51587 3418 aa4.91□□□□□ -1.62
VPS13D-211ENST00000543710 A0A1W2PNN7 141 aa4.9□□□□□ -1.62
VPS13D-211ENST00000543710 A0A087X002 238 aa4.9□□□□□ -1.63
VPS13D-211ENST00000543710 PRR26Q8N8Z3 221 aa4.89□□□□□ -1.63
VPS13D-211ENST00000543710 MMP24-AS1A0A0U1RRL7 71 aa4.88□□□□□ -1.63
VPS13D-211ENST00000543710 NDUFAF8A1L188 74 aa4.88□□□□□ -1.63
VPS13D-211ENST00000543710 AGRNO00468 2067 aa4.88□□□□□ -1.63
VPS13D-211ENST00000543710 ZCCHC13Q8WW36 166 aaKnown RBP4.88□□□□□ -1.63
VPS13D-211ENST00000543710 MKI67P46013 3256 aaKnown RBP4.87□□□□□ -1.63
VPS13D-211ENST00000543710 Q5XG85 94 aa4.87□□□□□ -1.63
VPS13D-211ENST00000543710 ZFHX3Q15911 3703 aa4.87□□□□□ -1.63
VPS13D-211ENST00000543710 CHD9Q3L8U1 2897 aa4.86□□□□□ -1.63
VPS13D-211ENST00000543710 RPS29P62273 56 aaKnown RBP4.86□□□□□ -1.63
VPS13D-211ENST00000543710 XIRP2A4UGR9 3374 aa4.86□□□□□ -1.63
VPS13D-211ENST00000543710 RANBP2P49792 3224 aaKnown RBP4.85□□□□□ -1.63
VPS13D-211ENST00000543710 ATRQ13535 2644 aa4.84□□□□□ -1.63
VPS13D-211ENST00000543710 TRANK1O15050 2925 aa4.84□□□□□ -1.63
VPS13D-211ENST00000543710 A0A1B0GU33 70 aa4.84□□□□□ -1.64
VPS13D-211ENST00000543710 CHD7Q9P2D1 2997 aa4.83□□□□□ -1.64
VPS13D-211ENST00000543710 S4R3F8 94 aa4.83□□□□□ -1.64
VPS13D-211ENST00000543710 MUC4Q99102 2169 aa4.83□□□□□ -1.64
VPS13D-211ENST00000543710 Q6ZR54 194 aa4.83□□□□□ -1.64
VPS13D-211ENST00000543710 Q8N9P0 234 aaPredicted RBP4.82□□□□□ -1.64
VPS13D-211ENST00000543710 LINC00472Q9H8W2 130 aa4.82□□□□□ -1.64
VPS13D-211ENST00000543710 UNC80Q8N2C7 3258 aa4.8□□□□□ -1.64
VPS13D-211ENST00000543710 CDH23Q9H251 3354 aa4.8□□□□□ -1.64
VPS13D-211ENST00000543710 USP24Q9UPU5 2620 aa4.79□□□□□ -1.64
VPS13D-211ENST00000543710 TRIOO75962 3097 aa4.79□□□□□ -1.64
VPS13D-211ENST00000543710 Q5VV11 94 aa4.78□□□□□ -1.64
VPS13D-211ENST00000543710 WDFY3Q8IZQ1 3526 aa4.78□□□□□ -1.64
VPS13D-211ENST00000543710 DNAH14Q0VDD8 3507 aa4.78□□□□□ -1.64
VPS13D-211ENST00000543710 NOTCH1P46531 2555 aa4.78□□□□□ -1.64
VPS13D-211ENST00000543710 KRTAP10-1P60331 282 aa4.77□□□□□ -1.65
VPS13D-211ENST00000543710 CSAG1Q6PB30 78 aa4.77□□□□□ -1.65
VPS13D-211ENST00000543710 Q5W150 140 aa4.77□□□□□ -1.65
VPS13D-211ENST00000543710 KRTAP26-1Q6PEX3 210 aa4.75□□□□□ -1.65
VPS13D-211ENST00000543710 SPINK7P58062 85 aa4.74□□□□□ -1.65
VPS13D-211ENST00000543710 ROMO1P60602 79 aa4.74□□□□□ -1.65
VPS13D-211ENST00000543710 PRRC2CQ9Y520 2896 aaKnown RBP4.73□□□□□ -1.65
VPS13D-211ENST00000543710 A0A0D9SG42 100 aa4.72□□□□□ -1.65
VPS13D-211ENST00000543710 H1FX-AS1Q4G0G2 97 aa4.72□□□□□ -1.65
VPS13D-211ENST00000543710 CFAP46Q8IYW2 2715 aa4.71□□□□□ -1.66
VPS13D-211ENST00000543710 PRUNE2Q8WUY3 3088 aa4.71□□□□□ -1.66
VPS13D-211ENST00000543710 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.7□□□□□ -1.66
VPS13D-211ENST00000543710 ITPR3Q14573 2671 aa4.7□□□□□ -1.66
VPS13D-211ENST00000543710 KRTAP10-2P60368 255 aa4.69□□□□□ -1.66
VPS13D-211ENST00000543710 KRTAP4-16G5E9R7 235 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-211ENST00000543710 KRTAP29-1A8MX34 341 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-211ENST00000543710 FLNAP21333 2647 aaKnown RBP4.68□□□□□ -1.66
VPS13D-211ENST00000543710 C5orf42Q9H799 3197 aa4.68□□□□□ -1.66
VPS13D-211ENST00000543710 FLG2Q5D862 2391 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-211ENST00000543710 TEP1Q99973 2627 aaKnown RBP4.67□□□□□ -1.66
VPS13D-211ENST00000543710 GCN1Q92616 2671 aaKnown RBP4.67□□□□□ -1.66
VPS13D-211ENST00000543710 RPL37P61927 97 aaKnown RBP4.67□□□□□ -1.66
VPS13D-211ENST00000543710 SPATA8Q6RVD6 105 aa4.66□□□□□ -1.66
VPS13D-211ENST00000543710 MYO15AQ9UKN7 3530 aa4.66□□□□□ -1.66
VPS13D-211ENST00000543710 SPTBN5Q9NRC6 3674 aaKnown RBP4.66□□□□□ -1.66
VPS13D-211ENST00000543710 ANAPC11Q9NYG5 84 aa4.66□□□□□ -1.66
VPS13D-211ENST00000543710 SPEGQ15772 3267 aa4.65□□□□□ -1.67
VPS13D-211ENST00000543710 UNC79Q9P2D8 2635 aa4.65□□□□□ -1.67
VPS13D-211ENST00000543710 VPS13AQ96RL7 3174 aa4.64□□□□□ -1.67
VPS13D-211ENST00000543710 A0A0G2JQZ4 141 aa4.64□□□□□ -1.67
VPS13D-211ENST00000543710 COL6A5A8TX70 2615 aa4.63□□□□□ -1.67
VPS13D-211ENST00000543710 CFAP54Q96N23 3096 aa4.63□□□□□ -1.67
VPS13D-211ENST00000543710 Q8NDZ9 215 aa4.63□□□□□ -1.67
VPS13D-211ENST00000543710 P0C880 135 aa4.58□□□□□ -1.68
VPS13D-211ENST00000543710 DMBT1Q9UGM3 2413 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-211ENST00000543710 M0QZ58 72 aa4.57□□□□□ -1.68
VPS13D-211ENST00000543710 R4GN34 69 aa4.57□□□□□ -1.68
VPS13D-211ENST00000543710 MUC3AQ02505 3323 aa4.57□□□□□ -1.68
VPS13D-211ENST00000543710 A6NN06 94 aa4.57□□□□□ -1.68
VPS13D-211ENST00000543710 SZT2Q5T011 3432 aa4.56□□□□□ -1.68
VPS13D-211ENST00000543710 CYSTM1Q9H1C7 97 aa4.56□□□□□ -1.68
VPS13D-211ENST00000543710 EYSQ5T1H1 3165 aa4.56□□□□□ -1.68
VPS13D-211ENST00000543710 LAMA1P25391 3075 aa4.56□□□□□ -1.68
VPS13D-211ENST00000543710 FRYLO94915 3013 aa4.56□□□□□ -1.68
VPS13D-211ENST00000543710 FRYQ5TBA9 3013 aa4.55□□□□□ -1.68
VPS13D-211ENST00000543710 DMDP11532 3685 aa4.55□□□□□ -1.68
VPS13D-211ENST00000543710 PANO1I0J062 215 aa4.54□□□□□ -1.68
VPS13D-211ENST00000543710 NBEAQ8NFP9 2946 aa4.54□□□□□ -1.68
VPS13D-211ENST00000543710 LCE2BO14633 110 aa4.53□□□□□ -1.68
VPS13D-211ENST00000543710 CR1P17927 2039 aa4.53□□□□□ -1.68
VPS13D-211ENST00000543710 KRTAP25-1Q3LHN0 102 aa4.52□□□□□ -1.69
VPS13D-211ENST00000543710 KRTAP13-1Q8IUC0 172 aa4.51□□□□□ -1.69
VPS13D-211ENST00000543710 C20orf166-AS1Q96NR2 134 aa4.49□□□□□ -1.69
VPS13D-211ENST00000543710 WDFY4Q6ZS81 3184 aa4.49□□□□□ -1.69
VPS13D-211ENST00000543710 KRTAP1-5Q9BYS1 174 aa4.48□□□□□ -1.69
VPS13D-211ENST00000543710 REV3LO60673 3130 aa4.48□□□□□ -1.69
VPS13D-211ENST00000543710 NOTCH2NLQ7Z3S9 236 aa4.47□□□□□ -1.69
VPS13D-211ENST00000543710 NBEAL1Q6ZS30 2694 aa4.47□□□□□ -1.69
VPS13D-211ENST00000543710 LCE2CQ5TA81 110 aa4.47□□□□□ -1.69
VPS13D-211ENST00000543710 ADM2Q7Z4H4 148 aa4.46□□□□□ -1.69
VPS13D-211ENST00000543710 IGSF10Q6WRI0 2623 aa4.45□□□□□ -1.7
VPS13D-211ENST00000543710 FREM2Q5SZK8 3169 aa4.45□□□□□ -1.7
VPS13D-211ENST00000543710 STAB2Q8WWQ8 2551 aa4.45□□□□□ -1.7
VPS13D-211ENST00000543710 PP632Q6XCG6 107 aa4.45□□□□□ -1.7
VPS13D-211ENST00000543710 Q6ZRN7 208 aaPredicted RBP4.44□□□□□ -1.7
VPS13D-211ENST00000543710 TNRC18O15417 2968 aaPredicted RBP4.44□□□□□ -1.7
VPS13D-211ENST00000543710 LCE2AQ5TA79 106 aaPredicted RBP4.44□□□□□ -1.7
VPS13D-211ENST00000543710 LOC400499M0QZD8 3231 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 161.6 ms