RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 ABCA1O95477 2261 aa2.11□□□□□ -2.07
YBX3-210ENST00000540975 PTPRQQ9UMZ3 2332 aa2.11□□□□□ -2.07
YBX3-210ENST00000540975 PSORS1C2Q9UIG4 136 aa2.11□□□□□ -2.07
YBX3-210ENST00000540975 FBN3Q75N90 2809 aa2.1□□□□□ -2.07
YBX3-210ENST00000540975 MAST4O15021 2626 aa2.1□□□□□ -2.07
YBX3-210ENST00000540975 CACNA1BQ00975 2339 aa2.1□□□□□ -2.07
YBX3-210ENST00000540975 DEFB131AP59861 70 aa2.1□□□□□ -2.07
YBX3-210ENST00000540975 Q8IZM0 81 aa2.1□□□□□ -2.07
YBX3-210ENST00000540975 URB1O60287 2271 aaKnown RBP2.1□□□□□ -2.07
YBX3-210ENST00000540975 LAMA1P25391 3075 aa2.09□□□□□ -2.07
YBX3-210ENST00000540975 CFAP54Q96N23 3096 aa2.09□□□□□ -2.07
YBX3-210ENST00000540975 SPTBN5Q9NRC6 3674 aaKnown RBP2.09□□□□□ -2.07
YBX3-210ENST00000540975 ANKHD1Q8IWZ3 2542 aaKnown RBP2.09□□□□□ -2.07
YBX3-210ENST00000540975 ICE1Q9Y2F5 2266 aa2.09□□□□□ -2.07
YBX3-210ENST00000540975 IGLV5-48A0A075B6I7 105 aa2.09□□□□□ -2.07
YBX3-210ENST00000540975 K7EQZ3 153 aa2.09□□□□□ -2.07
YBX3-210ENST00000540975 TOMM7Q9P0U1 55 aa2.09□□□□□ -2.07
YBX3-210ENST00000540975 WNK2Q9Y3S1 2297 aa2.08□□□□□ -2.08
YBX3-210ENST00000540975 WDR87Q6ZQQ6 2873 aa2.08□□□□□ -2.08
YBX3-210ENST00000540975 SETXQ7Z333 2677 aaKnown RBP2.08□□□□□ -2.08
YBX3-210ENST00000540975 TPRXLQ17RH7 258 aa2.08□□□□□ -2.08
YBX3-210ENST00000540975 USP34Q70CQ2 3546 aa2.08□□□□□ -2.08
YBX3-210ENST00000540975 CACNA1HO95180 2353 aa2.08□□□□□ -2.08
YBX3-210ENST00000540975 ZFHX2Q9C0A1 2572 aaPredicted RBP2.07□□□□□ -2.08
YBX3-210ENST00000540975 PKDREJQ9NTG1 2253 aa2.07□□□□□ -2.08
YBX3-210ENST00000540975 A0A0G2JQZ4 141 aa2.07□□□□□ -2.08
YBX3-210ENST00000540975 ACYP2P14621 99 aa2.07□□□□□ -2.08
YBX3-210ENST00000540975 HTN1P15515 57 aa2.07□□□□□ -2.08
YBX3-210ENST00000540975 SPACA4Q8TDM5 124 aa2.07□□□□□ -2.08
YBX3-210ENST00000540975 NCOR1O75376 2440 aa2.07□□□□□ -2.08
YBX3-210ENST00000540975 ROS1P08922 2347 aa2.06□□□□□ -2.08
YBX3-210ENST00000540975 TPRP12270 2363 aaKnown RBP2.06□□□□□ -2.08
YBX3-210ENST00000540975 FCGBPQ9Y6R7 5405 aaPredicted RBP2.06□□□□□ -2.08
YBX3-210ENST00000540975 DEFB131BA0A096LNP1 70 aa2.06□□□□□ -2.08
YBX3-210ENST00000540975 TRIOO75962 3097 aa2.06□□□□□ -2.08
YBX3-210ENST00000540975 MAP1BP46821 2468 aaKnown RBP2.06□□□□□ -2.08
YBX3-210ENST00000540975 WDFY3Q8IZQ1 3526 aa2.05□□□□□ -2.08
YBX3-210ENST00000540975 SPEGQ15772 3267 aa2.05□□□□□ -2.08
YBX3-210ENST00000540975 GVQW2A0A096LPI5 108 aaPredicted RBP2.05□□□□□ -2.08
YBX3-210ENST00000540975 NOP10Q9NPE3 64 aaKnown RBP2.05□□□□□ -2.08
YBX3-210ENST00000540975 PRO0255Q9UI72 69 aa2.05□□□□□ -2.08
YBX3-210ENST00000540975 APC2O95996 2303 aa2.05□□□□□ -2.08
YBX3-210ENST00000540975 ACACAQ13085 2346 aa2.05□□□□□ -2.08
YBX3-210ENST00000540975 ALMS1Q8TCU4 4167 aa2.04□□□□□ -2.08
YBX3-210ENST00000540975 KRTAP12-1P59990 96 aa2.04□□□□□ -2.08
YBX3-210ENST00000540975 NBEAQ8NFP9 2946 aa2.04□□□□□ -2.08
YBX3-210ENST00000540975 VPS13AQ96RL7 3174 aa2.04□□□□□ -2.08
YBX3-210ENST00000540975 ANKRD17O75179 2603 aaKnown RBP2.04□□□□□ -2.08
YBX3-210ENST00000540975 UBR4Q5T4S7 5183 aa2.04□□□□□ -2.08
YBX3-210ENST00000540975 EP300Q09472 2414 aaPredicted RBP2.03□□□□□ -2.08
YBX3-210ENST00000540975 MYO15AQ9UKN7 3530 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 FREM2Q5SZK8 3169 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 CFAP47Q6ZTR5 3102 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 ZZEF1O43149 2961 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 HMCN1Q96RW7 5635 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 H3BNG1 76 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 C10orf99Q6UWK7 81 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 SSBP3-AS1Q7Z2R9 100 aa2.03□□□□□ -2.08
YBX3-210ENST00000540975 PTPRZ1P23471 2315 aaPredicted RBP2.03□□□□□ -2.08
YBX3-210ENST00000540975 CNOT1A5YKK6 2376 aaKnown RBP2.02□□□□□ -2.09
YBX3-210ENST00000540975 PRUNE2Q8WUY3 3088 aa2.02□□□□□ -2.09
YBX3-210ENST00000540975 LY6G6CO95867 125 aa2.02□□□□□ -2.09
YBX3-210ENST00000540975 EYSQ5T1H1 3165 aa2.02□□□□□ -2.09
YBX3-210ENST00000540975 MED13LQ71F56 2210 aa2.02□□□□□ -2.09
YBX3-210ENST00000540975 SPTA1P02549 2419 aa2.01□□□□□ -2.09
YBX3-210ENST00000540975 CEP250Q9BV73 2442 aa2.01□□□□□ -2.09
YBX3-210ENST00000540975 DOPEY2Q9Y3R5 2298 aa2.01□□□□□ -2.09
YBX3-210ENST00000540975 USP9XQ93008 2570 aaPredicted RBP2.01□□□□□ -2.09
YBX3-210ENST00000540975 DEFB136Q30KP8 78 aa2.01□□□□□ -2.09
YBX3-210ENST00000540975 LELP1Q5T871 98 aa2.01□□□□□ -2.09
YBX3-210ENST00000540975 WFDC13Q8IUB5 93 aa2.01□□□□□ -2.09
YBX3-210ENST00000540975 FRYLO94915 3013 aa2□□□□□ -2.09
YBX3-210ENST00000540975 FRYQ5TBA9 3013 aa2□□□□□ -2.09
YBX3-210ENST00000540975 PCNX1Q96RV3 2341 aa2□□□□□ -2.09
YBX3-210ENST00000540975 ZFHX4Q86UP3 3567 aa2□□□□□ -2.09
YBX3-210ENST00000540975 MMP24-AS1A0A0U1RRL7 71 aa2□□□□□ -2.09
YBX3-210ENST00000540975 ANGP03950 147 aaKnown RBP2□□□□□ -2.09
YBX3-210ENST00000540975 TNRC18O15417 2968 aaPredicted RBP2□□□□□ -2.09
YBX3-210ENST00000540975 DMDP11532 3685 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 CELSR3Q9NYQ7 3312 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 MGAQ8IWI9 3026 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 SPART-AS1P0CW21 52 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 DEFB130BP0DP73 79 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 DEFB130AP0DP74 79 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 UNQ6190/PRO20217Q6UXQ8 127 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 C6orf48Q9UBA6 75 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 COL6A6A6NMZ7 2263 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 TLN1Q9Y490 2541 aaKnown RBP1.99□□□□□ -2.09
YBX3-210ENST00000540975 GVINP1Q7Z2Y8 2422 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 BDP1A6H8Y1 2624 aa1.99□□□□□ -2.09
YBX3-210ENST00000540975 RIF1Q5UIP0 2472 aaKnown RBP1.98□□□□□ -2.09
YBX3-210ENST00000540975 SPTBN1Q01082 2364 aaKnown RBP1.98□□□□□ -2.09
YBX3-210ENST00000540975 INE1O15225 51 aa1.98□□□□□ -2.09
YBX3-210ENST00000540975 SPRR1AP35321 89 aa1.98□□□□□ -2.09
YBX3-210ENST00000540975 CLPSL2Q6UWE3 100 aa1.98□□□□□ -2.09
YBX3-210ENST00000540975 WFDC10BQ8IUB3 73 aa1.98□□□□□ -2.09
YBX3-210ENST00000540975 TTC28Q96AY4 2481 aa1.98□□□□□ -2.09
YBX3-210ENST00000540975 ADGRG4Q8IZF6 3080 aa1.98□□□□□ -2.09
YBX3-210ENST00000540975 TEP1Q99973 2627 aaKnown RBP1.98□□□□□ -2.09
YBX3-210ENST00000540975 LOC400499M0QZD8 3231 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 154.3 ms