RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 HERC2O95714 4834 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 DNAH9Q9NYC9 4486 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 SPG11Q96JI7 2443 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 UBR4Q5T4S7 5183 aa-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 VPS13DQ5THJ4 4388 aa-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 PDE4DIPQ5VU43 2346 aa-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 HMGA1P17096 107 aaKnown RBP-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 ANKRD11Q6UB99 2663 aaPredicted RBP-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 MUC17Q685J3 4493 aa-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 DMXL1Q9Y485 3027 aa-0.5□□□□□ -2.49
VPS13A-213ENST00000539950 DSPP15924 2871 aaKnown RBP-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 ANK3Q12955 4377 aaKnown RBP-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 H3BNG1 76 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 PIK3C2BO00750 1634 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 LINC00158P58513 81 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 TDRG1Q3Y452 100 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 WFDC9Q8NEX5 89 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 THOC2Q8NI27 1593 aaKnown RBP-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 UACAQ9BZF9 1416 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 ARFGEF2Q9Y6D5 1785 aa-0.51□□□□□ -2.49
VPS13A-213ENST00000539950 FASNP49327 2511 aaKnown RBP-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 MED14O60244 1454 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 ITPR3Q14573 2671 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 PRLHP81277 87 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 DEFB121Q5J5C9 76 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 ATP5EP2Q5VTU8 51 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 Q9H521 79 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 NBPF19A0A087WUL8 3843 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 LYSTQ99698 3801 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 SCN11AQ9UI33 1791 aa-0.52□□□□□ -2.49
VPS13A-213ENST00000539950 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-213ENST00000539950 APOBP04114 4563 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-213ENST00000539950 CD163L1Q9NR16 1453 aa-0.53□□□□□ -2.49
VPS13A-213ENST00000539950 IFI6P09912 130 aa-0.53□□□□□ -2.49
VPS13A-213ENST00000539950 EPPK1P58107 5090 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-213ENST00000539950 RNF17Q9BXT8 1623 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-213ENST00000539950 MYO18BQ8IUG5 2567 aa-0.53□□□□□ -2.5
VPS13A-213ENST00000539950 ANKRD50Q9ULJ7 1429 aa-0.54□□□□□ -2.5
VPS13A-213ENST00000539950 KANTRA0A1W2PQU2 76 aa-0.54□□□□□ -2.5
VPS13A-213ENST00000539950 UMAD1C9J7I0 102 aa-0.54□□□□□ -2.5
VPS13A-213ENST00000539950 IFI27P40305 119 aaPredicted RBP-0.54□□□□□ -2.5
VPS13A-213ENST00000539950 RB1CC1Q8TDY2 1594 aa-0.54□□□□□ -2.5
VPS13A-213ENST00000539950 ZC3H13Q5T200 1668 aaKnown RBP-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 DEFB131BA0A096LNP1 70 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 NDUFA4O00483 81 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 DEFB130BP0DP73 79 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 DEFB130AP0DP74 79 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 TRIOO75962 3097 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 AKAP9Q99996 3911 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 PKHD1L1Q86WI1 4243 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 KALRNO60229 2985 aa-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 GCN1Q92616 2671 aaKnown RBP-0.55□□□□□ -2.5
VPS13A-213ENST00000539950 CFAP43Q8NDM7 1665 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 DNAH3Q8TD57 4116 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 CFAP74Q9C0B2 1584 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 MT1HP80294 61 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 NREPQ16612 68 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 KRTAP19-5Q3LI72 72 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 KCNQ1DNQ9H478 68 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 ABCC1P33527 1531 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 KDM5DQ9BY66 1539 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 MTORP42345 2549 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 DNAH11Q96DT5 4516 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 RANBP2P49792 3224 aaKnown RBP-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 DDX60LQ5H9U9 1706 aaKnown RBP-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 PLCH1Q4KWH8 1693 aa-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 USP9YO00507 2555 aaPredicted RBP-0.56□□□□□ -2.5
VPS13A-213ENST00000539950 INO80Q9ULG1 1556 aaPredicted RBP-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 DCAF1Q9Y4B6 1507 aa-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 ITSN1Q15811 1721 aa-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 IAPPP10997 89 aa-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 ST20Q9HBF5 79 aa-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 NBEAQ8NFP9 2946 aa-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 LAMA3Q16787 3333 aa-0.57□□□□□ -2.5
VPS13A-213ENST00000539950 MGAM2Q2M2H8 2515 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 WDR87Q6ZQQ6 2873 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 ITSN2Q9NZM3 1697 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 ERVK-7P63135 1459 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 VPS13BQ7Z7G8 4022 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 GNG2P59768 71 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 S4R3F8 94 aa-0.58□□□□□ -2.5
VPS13A-213ENST00000539950 ARHGAP35Q9NRY4 1499 aa-0.59□□□□□ -2.5
VPS13A-213ENST00000539950 UTP20O75691 2785 aaKnown RBP-0.59□□□□□ -2.5
VPS13A-213ENST00000539950 FAM186AA6NE01 2351 aa-0.59□□□□□ -2.5
VPS13A-213ENST00000539950 RELNP78509 3460 aa-0.59□□□□□ -2.5
VPS13A-213ENST00000539950 RICTORQ6R327 1708 aa-0.59□□□□□ -2.5
VPS13A-213ENST00000539950 KIAA0586Q9BVV6 1533 aa-0.59□□□□□ -2.5
VPS13A-213ENST00000539950 RALGAPBQ86X10 1494 aa-0.6□□□□□ -2.5
VPS13A-213ENST00000539950 CEP290O15078 2479 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 PKD1L2Q7Z442 2459 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 TJP1Q07157 1748 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 HFM1A2PYH4 1435 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 MRPL33O75394 65 aaKnown RBP-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 SMIM13P0DJ93 91 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 ADIRFQ15847 76 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 NHSQ6T4R5 1651 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 NBEAL2Q6ZNJ1 2754 aa-0.6□□□□□ -2.51
VPS13A-213ENST00000539950 LRRK2Q5S007 2527 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 ACACBO00763 2458 aa-0.61□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms