RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.46
VPS13A-213ENST00000539950 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
VPS13A-213ENST00000539950 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
VPS13A-213ENST00000539950 PHF23Q9BUL5 403 aaPredicted RBP20.43■□□□□ 0.86
VPS13A-213ENST00000539950 FOXD1Q16676 465 aa19.14■□□□□ 0.65
VPS13A-213ENST00000539950 PLPPR3Q6T4P5 718 aa18.67■□□□□ 0.58
VPS13A-213ENST00000539950 PPP6R1Q9UPN7 881 aa18.15■□□□□ 0.5
VPS13A-213ENST00000539950 ADRA2BP18089 450 aa18.1■□□□□ 0.49
VPS13A-213ENST00000539950 PIAS4Q8N2W9 510 aaPredicted RBP17.94■□□□□ 0.46
VPS13A-213ENST00000539950 MSH5O43196 834 aa17.76■□□□□ 0.43
VPS13A-213ENST00000539950 POTEDQ86YR6 584 aa17.45■□□□□ 0.38
VPS13A-213ENST00000539950 MAPK8IP2Q13387 824 aaPredicted RBP16.56■□□□□ 0.24
VPS13A-213ENST00000539950 SCAF1Q9H7N4 1312 aaKnown RBP16.48■□□□□ 0.23
VPS13A-213ENST00000539950 PPP4R3CPQ6ZMV5 832 aa16.42■□□□□ 0.22
VPS13A-213ENST00000539950 DMRT2Q9Y5R5 561 aa16.34■□□□□ 0.21
VPS13A-213ENST00000539950 CNKSR2Q8WXI2 1034 aa16.02■□□□□ 0.16
VPS13A-213ENST00000539950 HOXD11P31277 338 aaPredicted RBP15.86■□□□□ 0.13
VPS13A-213ENST00000539950 NCBP3Q53F19 620 aaKnown RBP15.83■□□□□ 0.12
VPS13A-213ENST00000539950 RNF216Q9NWF9 866 aaPredicted RBP15.81■□□□□ 0.12
VPS13A-213ENST00000539950 NPM3O75607 178 aaKnown RBP15.67■□□□□ 0.1
VPS13A-213ENST00000539950 DCAF8L1A6NGE4 600 aa15.66■□□□□ 0.1
VPS13A-213ENST00000539950 KCNA4P22459 653 aa15.64■□□□□ 0.09
VPS13A-213ENST00000539950 DNAJC5BQ9UF47 199 aa15.22■□□□□ 0.03
VPS13A-213ENST00000539950 RNF39Q9H2S5 420 aa15.21■□□□□ 0.03
VPS13A-213ENST00000539950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.1■□□□□ 0.01
VPS13A-213ENST00000539950 CACNB1Q02641 598 aaPredicted RBP15.07■□□□□ 0
VPS13A-213ENST00000539950 C1QBPQ07021 282 aaKnown RBP14.97□□□□□ -0.01
VPS13A-213ENST00000539950 SLC4A2P04920 1241 aa14.9□□□□□ -0.02
VPS13A-213ENST00000539950 U3KPZ7 1027 aaPredicted RBP14.85□□□□□ -0.03
VPS13A-213ENST00000539950 SLC4A1APQ9BWU0 796 aaKnown RBP14.79□□□□□ -0.04
VPS13A-213ENST00000539950 SPINK5Q9NQ38 1064 aaPredicted RBP14.56□□□□□ -0.08
VPS13A-213ENST00000539950 CAPN15O75808 1086 aa14.48□□□□□ -0.09
VPS13A-213ENST00000539950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.46□□□□□ -0.09
VPS13A-213ENST00000539950 HNRNPUL2Q1KMD3 747 aaKnown RBP14.46□□□□□ -0.09
VPS13A-213ENST00000539950 FOXD4L1Q9NU39 408 aa14.46□□□□□ -0.09
VPS13A-213ENST00000539950 MYCNP04198 464 aaPredicted RBP14.45□□□□□ -0.1
VPS13A-213ENST00000539950 ZBTB22O15209 634 aa14.42□□□□□ -0.1
VPS13A-213ENST00000539950 SAMD1Q6SPF0 538 aaPredicted RBP14.41□□□□□ -0.1
VPS13A-213ENST00000539950 APLP2Q06481 763 aa14.38□□□□□ -0.11
VPS13A-213ENST00000539950 TRHP20396 242 aaPredicted RBP14.34□□□□□ -0.11
VPS13A-213ENST00000539950 DSG3P32926 999 aa14.34□□□□□ -0.11
VPS13A-213ENST00000539950 ZNF219Q9P2Y4 722 aaPredicted RBP14.28□□□□□ -0.12
VPS13A-213ENST00000539950 ABCB7O75027 752 aa14.21□□□□□ -0.13
VPS13A-213ENST00000539950 ATF5Q9Y2D1 282 aaPredicted RBP14.16□□□□□ -0.14
VPS13A-213ENST00000539950 POLA2Q14181 598 aa14.02□□□□□ -0.17
VPS13A-213ENST00000539950 CSRNP3Q8WYN3 585 aa13.99□□□□□ -0.17
VPS13A-213ENST00000539950 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
VPS13A-213ENST00000539950 ATXN8OSP0DMR3 200 aa13.97□□□□□ -0.17
VPS13A-213ENST00000539950 ZBTB12Q9Y330 459 aaPredicted RBP13.7□□□□□ -0.22
VPS13A-213ENST00000539950 RBM42Q9BTD8 480 aaKnown RBP13.63□□□□□ -0.23
VPS13A-213ENST00000539950 OSCARQ8IYS5 282 aa13.57□□□□□ -0.24
VPS13A-213ENST00000539950 FBLN2P98095 1184 aa13.51□□□□□ -0.25
VPS13A-213ENST00000539950 MKRN4PQ13434 485 aaPredicted RBP13.51□□□□□ -0.25
VPS13A-213ENST00000539950 POTEHQ6S545 545 aa13.41□□□□□ -0.26
VPS13A-213ENST00000539950 AKT1S1Q96B36 256 aa13.39□□□□□ -0.27
VPS13A-213ENST00000539950 SPDYE2BA6NHP3 402 aa13.32□□□□□ -0.28
VPS13A-213ENST00000539950 SPDYE6P0CI01 402 aa13.32□□□□□ -0.28
VPS13A-213ENST00000539950 SPDYE2Q495Y8 402 aa13.32□□□□□ -0.28
VPS13A-213ENST00000539950 REM2Q8IYK8 340 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-213ENST00000539950 CHRDL2Q6WN34 429 aa13.25□□□□□ -0.29
VPS13A-213ENST00000539950 ZNF692Q9BU19 519 aaPredicted RBP13.23□□□□□ -0.29
VPS13A-213ENST00000539950 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
VPS13A-213ENST00000539950 PITPNM1O00562 1244 aa13.16□□□□□ -0.3
VPS13A-213ENST00000539950 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
VPS13A-213ENST00000539950 SPDYE1Q8NFV5 336 aaPredicted RBP13.02□□□□□ -0.33
VPS13A-213ENST00000539950 PIP4P2Q8N4L2 257 aa13.01□□□□□ -0.33
VPS13A-213ENST00000539950 CLEC11AQ9Y240 323 aa13.01□□□□□ -0.33
VPS13A-213ENST00000539950 SPDYE4A6NLX3 237 aa12.99□□□□□ -0.33
VPS13A-213ENST00000539950 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
VPS13A-213ENST00000539950 PRR29P0C7W0 189 aa12.82□□□□□ -0.36
VPS13A-213ENST00000539950 PRKAR2AP13861 404 aaKnown RBP12.81□□□□□ -0.36
VPS13A-213ENST00000539950 CHADLQ6NUI6 762 aa12.77□□□□□ -0.37
VPS13A-213ENST00000539950 PROM2Q8N271 834 aa12.73□□□□□ -0.37
VPS13A-213ENST00000539950 STAG3Q9UJ98 1225 aa12.71□□□□□ -0.37
VPS13A-213ENST00000539950 HAX1O00165 279 aa12.68□□□□□ -0.38
VPS13A-213ENST00000539950 FKBP8Q14318 412 aa12.66□□□□□ -0.38
VPS13A-213ENST00000539950 EVX2Q03828 476 aa12.6□□□□□ -0.39
VPS13A-213ENST00000539950 CREBZFQ9NS37 354 aa12.6□□□□□ -0.39
VPS13A-213ENST00000539950 SP7Q8TDD2 431 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-213ENST00000539950 FARP1Q9Y4F1 1045 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-213ENST00000539950 C19orf67A6NJJ6 358 aa12.55□□□□□ -0.4
VPS13A-213ENST00000539950 MNX1P50219 401 aaPredicted RBP12.44□□□□□ -0.42
VPS13A-213ENST00000539950 CD44P16070 742 aaKnown RBP12.42□□□□□ -0.42
VPS13A-213ENST00000539950 MIER1Q8N108 512 aa12.35□□□□□ -0.43
VPS13A-213ENST00000539950 NPM1P06748 294 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS13A-213ENST00000539950 GABBR2O75899 941 aa12.3□□□□□ -0.44
VPS13A-213ENST00000539950 ZRANB1Q9UGI0 708 aa12.29□□□□□ -0.44
VPS13A-213ENST00000539950 PLCD3Q8N3E9 789 aa12.28□□□□□ -0.44
VPS13A-213ENST00000539950 PLEKHG5O94827 1062 aa12.26□□□□□ -0.45
VPS13A-213ENST00000539950 FBXO3Q9UK99 471 aa12.26□□□□□ -0.45
VPS13A-213ENST00000539950 ZNF579Q8NAF0 562 aaKnown RBP12.23□□□□□ -0.45
VPS13A-213ENST00000539950 PAK3O75914 559 aaPredicted RBP12.21□□□□□ -0.45
VPS13A-213ENST00000539950 PHF12Q96QT6 1004 aa12.18□□□□□ -0.46
VPS13A-213ENST00000539950 TSPYL2Q9H2G4 693 aaPredicted RBP12.16□□□□□ -0.46
VPS13A-213ENST00000539950 RASEFQ8IZ41 740 aa12.15□□□□□ -0.46
VPS13A-213ENST00000539950 VASPP50552 380 aaPredicted RBP12.14□□□□□ -0.47
VPS13A-213ENST00000539950 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
VPS13A-213ENST00000539950 CLCN6P51797 869 aa12.13□□□□□ -0.47
VPS13A-213ENST00000539950 NUBP1P53384 320 aa12.1□□□□□ -0.47
VPS13A-213ENST00000539950 GALR2O43603 387 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms