RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 TRBV7-4A0A0J9YYF1 115 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 TRBV27A0A0K0K1C4 114 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 IGKV2D-28P01615 120 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 BAALC-AS2P0C853 105 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 LGALS3P17931 250 aaKnown RBP2.01□□□□□ -2.09
USP48-215ENST00000534705 RPL28P46779 137 aaKnown RBP2.01□□□□□ -2.09
USP48-215ENST00000534705 LINC00313P59037 77 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 KRTAP10-10P60014 251 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 SS18Q15532 418 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 Q1T7F1 81 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 DYNLRB2Q8TF09 96 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 RHPN1-AS1Q9BWJ2 59 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 LINC00474Q9P2X8 69 aa2.01□□□□□ -2.09
USP48-215ENST00000534705 IGHV3-30-3P0DP02 117 aa2□□□□□ -2.09
USP48-215ENST00000534705 CMC4P56277 68 aaPredicted RBP2□□□□□ -2.09
USP48-215ENST00000534705 S100A7L2Q5SY68 101 aa2□□□□□ -2.09
USP48-215ENST00000534705 MUC7Q8TAX7 377 aa2□□□□□ -2.09
USP48-215ENST00000534705 BRK1Q8WUW1 75 aa2□□□□□ -2.09
USP48-215ENST00000534705 PKHD1P08F94 4074 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 IGKV3-7A0A075B6H7 116 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 A0A087WVE0 104 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 IGKV2-40A0A087WW87 121 aaPredicted RBP1.99□□□□□ -2.09
USP48-215ENST00000534705 LCE6AA0A183 80 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 LRCOL1A6NCL2 159 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 A8MTW9 85 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 C3orf84H3BNL1 204 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 NDUFA1O15239 70 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 IGKV2D-40P01614 121 aaPredicted RBP1.99□□□□□ -2.09
USP48-215ENST00000534705 MIFP14174 115 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 DEFB131AP59861 70 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 DEFB1P60022 68 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 DEFB135Q30KP9 77 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 C20orf197Q8N268 126 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 CIRBP-AS1Q8TBR5 109 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 RPL39LQ96EH5 51 aaKnown RBP1.99□□□□□ -2.09
USP48-215ENST00000534705 ZNF625Q96I27 306 aaPredicted RBP1.99□□□□□ -2.09
USP48-215ENST00000534705 LINC00588Q9Y4M8 146 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 RYR1P21817 5038 aa1.99□□□□□ -2.09
USP48-215ENST00000534705 HERC2O95714 4834 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 DNAH8Q96JB1 4490 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 IGLV4-60A0A075B6I1 120 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 IGKV3D-7A0A0C4DH55 119 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 hDV103S1A0JD37 113 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 A8MUN3 132 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 H7C2G1 150 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 UBE2L6O14933 153 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 ESRGQ1W209 222 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 DEFB116Q30KQ4 102 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 FAM229BQ4G0N7 80 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 SOSTDC1Q6X4U4 206 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 PHF5AQ7RTV0 110 aaKnown RBP1.98□□□□□ -2.09
USP48-215ENST00000534705 MIR7-3HGQ8N6C7 128 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 Q8NAQ8 132 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 LINC00308Q8TCZ7 52 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 NDUFA12Q9UI09 145 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 PHLDA3Q9Y5J5 127 aa1.98□□□□□ -2.09
USP48-215ENST00000534705 APOBP04114 4563 aaKnown RBP1.97□□□□□ -2.09
USP48-215ENST00000534705 KIAA1109Q2LD37 5005 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 LRP1BQ9NZR2 4599 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 F8WEM9 126 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 H0YGX0 51 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 RNASE3P12724 160 aaKnown RBP1.97□□□□□ -2.09
USP48-215ENST00000534705 SNRPD3P62318 126 aaKnown RBP1.97□□□□□ -2.09
USP48-215ENST00000534705 RPL39P62891 51 aaKnown RBP1.97□□□□□ -2.09
USP48-215ENST00000534705 KTN1-AS1Q86SY8 53 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 ZFAND2AQ8N6M9 145 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 Q8TAT8 98 aa1.97□□□□□ -2.09
USP48-215ENST00000534705 C11orf68Q9H3H3 251 aaKnown RBP1.97□□□□□ -2.09
USP48-215ENST00000534705 LOC110117498A0A087WWA1 95 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 A6NN06 94 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 M0QY20 66 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 M0R378 163 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 DEFB4AO15263 64 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 DNAL4O96015 105 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 PRB4P10163 310 aaPredicted RBP1.96□□□□□ -2.1
USP48-215ENST00000534705 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 PRR9Q5T870 116 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 SPANXA2-OT1Q8N9U9 137 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 ZCCHC13Q8WW36 166 aaKnown RBP1.96□□□□□ -2.1
USP48-215ENST00000534705 CYP4F30PQ9H0H9 118 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 XAGE1AQ9HD64 81 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 C14orf132Q9NPU4 83 aa1.96□□□□□ -2.1
USP48-215ENST00000534705 TRAV23DV6A0A075B6W5 121 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 TRAV10A0A0B4J240 114 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 IGKV2-29A2NJV5 120 aaPredicted RBP1.95□□□□□ -2.1
USP48-215ENST00000534705 A6NED7 52 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 JMJD7-PLA2G4BH0Y9G9 81 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 PRM2P04554 102 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 S100A4P26447 101 aaKnown RBP1.95□□□□□ -2.1
USP48-215ENST00000534705 RBM3P98179 157 aaKnown RBP1.95□□□□□ -2.1
USP48-215ENST00000534705 CIRBPQ14011 172 aaKnown RBP1.95□□□□□ -2.1
USP48-215ENST00000534705 SPANXN1Q5VSR9 72 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 Q5W150 140 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 APLNQ9ULZ1 77 aa1.95□□□□□ -2.1
USP48-215ENST00000534705 HSPG2P98160 4391 aa1.94□□□□□ -2.1
USP48-215ENST00000534705 TRAV21A0A0B4J279 112 aa1.94□□□□□ -2.1
USP48-215ENST00000534705 IGLV7-43P04211 117 aa1.94□□□□□ -2.1
USP48-215ENST00000534705 SPINK13Q1W4C9 94 aa1.94□□□□□ -2.1
USP48-215ENST00000534705 ENHOQ6UWT2 76 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms