RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CXCL6P80162 114 aa5.64□□□□□ -1.51
HDAC3-215ENST00000519474 A8MUN3 132 aa5.63□□□□□ -1.51
HDAC3-215ENST00000519474 H0Y9J4 135 aa5.63□□□□□ -1.51
HDAC3-215ENST00000519474 KRTAP1-4P0C5Y4 121 aa5.63□□□□□ -1.51
HDAC3-215ENST00000519474 ATXN8Q156A1 80 aa5.63□□□□□ -1.51
HDAC3-215ENST00000519474 Q75L30 129 aa5.63□□□□□ -1.51
HDAC3-215ENST00000519474 NOTCH2NLQ7Z3S9 236 aa5.63□□□□□ -1.51
HDAC3-215ENST00000519474 TMEM256-PLSCR3K7ERE1 68 aa5.62□□□□□ -1.51
HDAC3-215ENST00000519474 ZNF861PO60384 105 aa5.62□□□□□ -1.51
HDAC3-215ENST00000519474 LINC00167Q96N53 147 aa5.62□□□□□ -1.51
HDAC3-215ENST00000519474 LOC107984156A0A0G2JMH3 177 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 C11orf86A6NJI1 115 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 MP68P56378 58 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 KLKP1Q107X0 134 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 ARL17AQ8IVW1 177 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 HIST1H4GQ99525 98 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 CYSTM1Q9H1C7 97 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 TNXBP22105 4242 aa5.61□□□□□ -1.51
HDAC3-215ENST00000519474 IGLV5-37A0A075B6J1 123 aa5.6□□□□□ -1.51
HDAC3-215ENST00000519474 RPL37AP8A6NKH3 93 aa5.6□□□□□ -1.51
HDAC3-215ENST00000519474 Q1T7F1 81 aa5.6□□□□□ -1.51
HDAC3-215ENST00000519474 DAND5Q8N907 189 aa5.6□□□□□ -1.51
HDAC3-215ENST00000519474 HMCN2Q8NDA2 5059 aa5.6□□□□□ -1.51
HDAC3-215ENST00000519474 TRAV13-2A0A0B4J235 113 aa5.59□□□□□ -1.51
HDAC3-215ENST00000519474 H7BZZ5 65 aa5.59□□□□□ -1.51
HDAC3-215ENST00000519474 ZNF625Q96I27 306 aaPredicted RBP5.59□□□□□ -1.51
HDAC3-215ENST00000519474 IGLV1-50A0A075B6I6 118 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 TRAV12-1A0A0B4J245 112 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 COX17Q14061 63 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 Q6JHZ5 121 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 ATP11AUNQ6ZP68 121 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 C7orf65Q6ZTY9 151 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 NKAPP1Q8N9T2 125 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 SND1-IT1Q9HBX3 110 aa5.58□□□□□ -1.52
HDAC3-215ENST00000519474 TMEM223A0PJW6 202 aa5.57□□□□□ -1.52
HDAC3-215ENST00000519474 Q8NDZ9 215 aa5.57□□□□□ -1.52
HDAC3-215ENST00000519474 TEX49A0A1B0GTD5 131 aa5.56□□□□□ -1.52
HDAC3-215ENST00000519474 TRIAP1O43715 76 aa5.56□□□□□ -1.52
HDAC3-215ENST00000519474 LINC00337Q8N6G1 96 aa5.56□□□□□ -1.52
HDAC3-215ENST00000519474 A0A087X002 238 aa5.55□□□□□ -1.52
HDAC3-215ENST00000519474 PSPHP1O15172 72 aa5.55□□□□□ -1.52
HDAC3-215ENST00000519474 RPL28P46779 137 aaKnown RBP5.55□□□□□ -1.52
HDAC3-215ENST00000519474 UBE2AP49459 152 aa5.55□□□□□ -1.52
HDAC3-215ENST00000519474 RBM3P98179 157 aaKnown RBP5.55□□□□□ -1.52
HDAC3-215ENST00000519474 KRTAP13-1Q8IUC0 172 aa5.55□□□□□ -1.52
HDAC3-215ENST00000519474 LINC00158P58513 81 aa5.54□□□□□ -1.52
HDAC3-215ENST00000519474 PRO1854Q9UHT4 67 aa5.54□□□□□ -1.52
HDAC3-215ENST00000519474 IGKV2-28A0A075B6P5 120 aa5.53□□□□□ -1.52
HDAC3-215ENST00000519474 IGKV2D-28P01615 120 aa5.53□□□□□ -1.52
HDAC3-215ENST00000519474 LINC00313P59037 77 aa5.53□□□□□ -1.52
HDAC3-215ENST00000519474 ATP5EP2Q5VTU8 51 aa5.53□□□□□ -1.52
HDAC3-215ENST00000519474 SFTA2Q6UW10 78 aa5.53□□□□□ -1.52
HDAC3-215ENST00000519474 ANAPC11Q9NYG5 84 aa5.53□□□□□ -1.52
HDAC3-215ENST00000519474 TRAV7A0A075B6U4 112 aa5.52□□□□□ -1.53
HDAC3-215ENST00000519474 TRBV10-3A0A0K0K1G6 114 aa5.52□□□□□ -1.53
HDAC3-215ENST00000519474 UBR4Q5T4S7 5183 aa5.52□□□□□ -1.53
HDAC3-215ENST00000519474 ASB16-AS1Q495Z4 193 aa5.51□□□□□ -1.53
HDAC3-215ENST00000519474 LINC01554Q52M75 96 aa5.5□□□□□ -1.53
HDAC3-215ENST00000519474 S100A7L2Q5SY68 101 aa5.5□□□□□ -1.53
HDAC3-215ENST00000519474 NDUFA12Q9UI09 145 aa5.5□□□□□ -1.53
HDAC3-215ENST00000519474 A6NN06 94 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 LEPROTO15243 131 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 CFC1BP0CG36 223 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 CFC1P0CG37 223 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 PRLHP81277 87 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 KRTAP13-2Q52LG2 175 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 MIR7-3HGQ8N6C7 128 aa5.49□□□□□ -1.53
HDAC3-215ENST00000519474 IGKV2D-26A0A0A0MRZ7 120 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 IGHV6-1A0A0B4J1U7 121 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 ERC2-IT1O76042 136 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 COX6CP09669 75 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 PLNP26678 52 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 TSPEAR-AS2P59090 65 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 C6orf99Q4VX62 202 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 TYMSOSQ8TAI1 123 aa5.48□□□□□ -1.53
HDAC3-215ENST00000519474 C20orf197Q8N268 126 aa5.47□□□□□ -1.53
HDAC3-215ENST00000519474 SMCR5Q8TEV8 140 aa5.47□□□□□ -1.53
HDAC3-215ENST00000519474 LRP2P98164 4655 aa5.47□□□□□ -1.53
HDAC3-215ENST00000519474 A0A1B0GW54 56 aa5.46□□□□□ -1.54
HDAC3-215ENST00000519474 FAM229BQ4G0N7 80 aa5.46□□□□□ -1.54
HDAC3-215ENST00000519474 KRTAP4-16G5E9R7 235 aaPredicted RBP5.45□□□□□ -1.54
HDAC3-215ENST00000519474 SPRR1AP35321 89 aa5.45□□□□□ -1.54
HDAC3-215ENST00000519474 KCNQ1DNQ9H478 68 aa5.45□□□□□ -1.54
HDAC3-215ENST00000519474 SEC61BP60468 96 aaKnown RBP5.44□□□□□ -1.54
HDAC3-215ENST00000519474 PRR4Q16378 134 aa5.44□□□□□ -1.54
HDAC3-215ENST00000519474 CYP4F30PQ9H0H9 118 aa5.44□□□□□ -1.54
HDAC3-215ENST00000519474 NCR3O14931 201 aa5.43□□□□□ -1.54
HDAC3-215ENST00000519474 ADAMTSL4-AS1Q5T5F5 129 aa5.43□□□□□ -1.54
HDAC3-215ENST00000519474 HIGD2AQ9BW72 106 aa5.43□□□□□ -1.54
HDAC3-215ENST00000519474 LPAP08519 4548 aa5.43□□□□□ -1.54
HDAC3-215ENST00000519474 MPLKIPQ8TAP9 179 aa5.42□□□□□ -1.54
HDAC3-215ENST00000519474 SPRR4Q96PI1 79 aa5.42□□□□□ -1.54
HDAC3-215ENST00000519474 A0A0J9YXY3 114 aa5.41□□□□□ -1.54
HDAC3-215ENST00000519474 F8WEM9 126 aa5.41□□□□□ -1.54
HDAC3-215ENST00000519474 SOSTDC1Q6X4U4 206 aa5.41□□□□□ -1.54
HDAC3-215ENST00000519474 LINC00304Q8N9R0 145 aa5.4□□□□□ -1.54
HDAC3-215ENST00000519474 ETDCA0A1B0GVM5 59 aa5.38□□□□□ -1.55
HDAC3-215ENST00000519474 IGLV6-57P01721 117 aa5.38□□□□□ -1.55
HDAC3-215ENST00000519474 CLEC2BQ92478 149 aa5.38□□□□□ -1.55
HDAC3-215ENST00000519474 LITAFQ99732 161 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms