RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 A0A087X002 238 aa12.91□□□□□ -0.34
C9orf3-222ENST00000496567 OCIAD2Q56VL3 154 aa12.91□□□□□ -0.34
C9orf3-222ENST00000496567 LRP1Q07954 4544 aaKnown RBP12.91□□□□□ -0.34
C9orf3-222ENST00000496567 DNAL4O96015 105 aa12.9□□□□□ -0.34
C9orf3-222ENST00000496567 TRACP01848 142 aa12.9□□□□□ -0.34
C9orf3-222ENST00000496567 LINC01547P58512 204 aaPredicted RBP12.9□□□□□ -0.34
C9orf3-222ENST00000496567 MTURNQ8N3F0 131 aa12.9□□□□□ -0.34
C9orf3-222ENST00000496567 PCLOQ9Y6V0 5065 aa12.89□□□□□ -0.35
C9orf3-222ENST00000496567 GHRHP01286 108 aa12.89□□□□□ -0.35
C9orf3-222ENST00000496567 C9JAW5 83 aa12.88□□□□□ -0.35
C9orf3-222ENST00000496567 PPDPFLQ8WWR9 84 aa12.88□□□□□ -0.35
C9orf3-222ENST00000496567 Q8N377 158 aa12.87□□□□□ -0.35
C9orf3-222ENST00000496567 LAMTOR3Q9UHA4 124 aa12.87□□□□□ -0.35
C9orf3-222ENST00000496567 KRTAP10-8P60410 259 aa12.86□□□□□ -0.35
C9orf3-222ENST00000496567 KRTAP13-2Q52LG2 175 aa12.86□□□□□ -0.35
C9orf3-222ENST00000496567 PRO0461Q9UI25 63 aa12.86□□□□□ -0.35
C9orf3-222ENST00000496567 TYMSOSQ8TAI1 123 aa12.85□□□□□ -0.35
C9orf3-222ENST00000496567 J3QL48 77 aa12.84□□□□□ -0.35
C9orf3-222ENST00000496567 IGLV9-49A0A0B4J1Y8 123 aa12.83□□□□□ -0.36
C9orf3-222ENST00000496567 MT1HL1P0DM35 61 aa12.83□□□□□ -0.36
C9orf3-222ENST00000496567 C3orf22Q8N5N4 141 aa12.83□□□□□ -0.36
C9orf3-222ENST00000496567 ORMDL1Q9P0S3 153 aa12.83□□□□□ -0.36
C9orf3-222ENST00000496567 H3BQ85 93 aa12.82□□□□□ -0.36
C9orf3-222ENST00000496567 SMCPP49901 116 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-222ENST00000496567 SMIM29Q86T20 159 aa12.81□□□□□ -0.36
C9orf3-222ENST00000496567 F8W1H4 67 aa12.8□□□□□ -0.36
C9orf3-222ENST00000496567 C9orf153Q5TBE3 101 aa12.79□□□□□ -0.36
C9orf3-222ENST00000496567 MOBPQ13875 183 aa12.78□□□□□ -0.36
C9orf3-222ENST00000496567 F8WEM9 126 aa12.77□□□□□ -0.36
C9orf3-222ENST00000496567 BAALC-AS2P0C853 105 aa12.77□□□□□ -0.36
C9orf3-222ENST00000496567 SSBP3-AS1Q7Z2R9 100 aa12.77□□□□□ -0.36
C9orf3-222ENST00000496567 TMEM256-PLSCR3K7ERE1 68 aa12.77□□□□□ -0.37
C9orf3-222ENST00000496567 Q8NBF4 154 aa12.77□□□□□ -0.37
C9orf3-222ENST00000496567 H3BT86 120 aa12.76□□□□□ -0.37
C9orf3-222ENST00000496567 ANKRD29Q8N6D5 301 aa12.76□□□□□ -0.37
C9orf3-222ENST00000496567 TNXBP22105 4242 aa12.75□□□□□ -0.37
C9orf3-222ENST00000496567 NDUFV3P56181 108 aaKnown RBP12.72□□□□□ -0.37
C9orf3-222ENST00000496567 LINC00304Q8N9R0 145 aa12.69□□□□□ -0.38
C9orf3-222ENST00000496567 IGLV8-61A0A075B6I0 122 aa12.68□□□□□ -0.38
C9orf3-222ENST00000496567 ETDBQ3ZM63 59 aa12.68□□□□□ -0.38
C9orf3-222ENST00000496567 C4orf48Q5BLP8 95 aa12.67□□□□□ -0.38
C9orf3-222ENST00000496567 DMBT1Q9UGM3 2413 aaPredicted RBP12.66□□□□□ -0.38
C9orf3-222ENST00000496567 Q6JHZ5 121 aa12.66□□□□□ -0.38
C9orf3-222ENST00000496567 SPAG11AQ6PDA7 123 aa12.66□□□□□ -0.38
C9orf3-222ENST00000496567 TEN1Q86WV5 123 aa12.63□□□□□ -0.39
C9orf3-222ENST00000496567 SPINK1P00995 79 aa12.6□□□□□ -0.39
C9orf3-222ENST00000496567 A0A1B0GV72 72 aa12.59□□□□□ -0.39
C9orf3-222ENST00000496567 IGFL1Q6UW32 110 aa12.59□□□□□ -0.39
C9orf3-222ENST00000496567 CD164Q04900 197 aa12.58□□□□□ -0.4
C9orf3-222ENST00000496567 A0A0G2JQZ4 141 aa12.56□□□□□ -0.4
C9orf3-222ENST00000496567 RBM3P98179 157 aaKnown RBP12.56□□□□□ -0.4
C9orf3-222ENST00000496567 HRCT1Q6UXD1 115 aa12.55□□□□□ -0.4
C9orf3-222ENST00000496567 OBSCN-AS1Q96MR7 158 aa12.55□□□□□ -0.4
C9orf3-222ENST00000496567 JMJD7-PLA2G4BH0Y9G9 81 aa12.54□□□□□ -0.4
C9orf3-222ENST00000496567 RPS29P62273 56 aaKnown RBP12.54□□□□□ -0.4
C9orf3-222ENST00000496567 DSCR8Q96T75 97 aa12.52□□□□□ -0.41
C9orf3-222ENST00000496567 C14orf132Q9NPU4 83 aa12.5□□□□□ -0.41
C9orf3-222ENST00000496567 TRBV7-4A0A0J9YYF1 115 aa12.48□□□□□ -0.41
C9orf3-222ENST00000496567 LIMD2Q9BT23 127 aa12.48□□□□□ -0.41
C9orf3-222ENST00000496567 Q6Q795 121 aa12.47□□□□□ -0.41
C9orf3-222ENST00000496567 TRBV7-7A0A0K0K1E9 115 aa12.45□□□□□ -0.42
C9orf3-222ENST00000496567 A0A1W2PNM2 257 aa12.43□□□□□ -0.42
C9orf3-222ENST00000496567 CCKP06307 115 aa12.43□□□□□ -0.42
C9orf3-222ENST00000496567 PDE6GP18545 87 aa12.43□□□□□ -0.42
C9orf3-222ENST00000496567 Q5XG85 94 aa12.43□□□□□ -0.42
C9orf3-222ENST00000496567 LOC110117498A0A087WWA1 95 aa12.41□□□□□ -0.42
C9orf3-222ENST00000496567 HERC1Q15751 4861 aa12.4□□□□□ -0.42
C9orf3-222ENST00000496567 Q6ZQT0 140 aa12.39□□□□□ -0.43
C9orf3-222ENST00000496567 C21orf62-AS1Q17RA5 79 aa12.39□□□□□ -0.43
C9orf3-222ENST00000496567 VPS25Q9BRG1 176 aa12.39□□□□□ -0.43
C9orf3-222ENST00000496567 J3QR89 54 aa12.36□□□□□ -0.43
C9orf3-222ENST00000496567 SS18L2Q9UHA2 77 aa12.36□□□□□ -0.43
C9orf3-222ENST00000496567 K7ERU9 68 aa12.35□□□□□ -0.43
C9orf3-222ENST00000496567 RETNLBQ9BQ08 111 aa12.35□□□□□ -0.43
C9orf3-222ENST00000496567 A0A087WSZ3 146 aa12.35□□□□□ -0.43
C9orf3-222ENST00000496567 ASB16-AS1Q495Z4 193 aa12.32□□□□□ -0.44
C9orf3-222ENST00000496567 PRR4Q16378 134 aa12.31□□□□□ -0.44
C9orf3-222ENST00000496567 A0A1B0GW54 56 aa12.3□□□□□ -0.44
C9orf3-222ENST00000496567 FP248Q71RG6 208 aaPredicted RBP12.3□□□□□ -0.44
C9orf3-222ENST00000496567 C1orf195Q5TG92 126 aa12.27□□□□□ -0.44
C9orf3-222ENST00000496567 FAM240AA0A1B0GVK7 77 aa12.26□□□□□ -0.45
C9orf3-222ENST00000496567 IGLV7-46A0A075B6I9 117 aa12.22□□□□□ -0.45
C9orf3-222ENST00000496567 ACYP1P07311 99 aa12.22□□□□□ -0.45
C9orf3-222ENST00000496567 LINC00846Q9NV44 126 aa12.21□□□□□ -0.46
C9orf3-222ENST00000496567 HMCN2Q8NDA2 5059 aa12.16□□□□□ -0.46
C9orf3-222ENST00000496567 Q96NJ1 140 aa12.16□□□□□ -0.46
C9orf3-222ENST00000496567 CDIP1Q9H305 208 aa12.16□□□□□ -0.46
C9orf3-222ENST00000496567 LINC00472Q9H8W2 130 aa12.13□□□□□ -0.47
C9orf3-222ENST00000496567 NREPQ16612 68 aa12.12□□□□□ -0.47
C9orf3-222ENST00000496567 TPRXLQ17RH7 258 aa12.12□□□□□ -0.47
C9orf3-222ENST00000496567 UBL5Q9BZL1 73 aa12.09□□□□□ -0.47
C9orf3-222ENST00000496567 IGKV4-1P06312 121 aa12.09□□□□□ -0.47
C9orf3-222ENST00000496567 Q6ZVQ6 151 aa12.09□□□□□ -0.47
C9orf3-222ENST00000496567 DEFB116Q30KQ4 102 aa12.08□□□□□ -0.48
C9orf3-222ENST00000496567 J3KT08 172 aa12.07□□□□□ -0.48
C9orf3-222ENST00000496567 SIGMAR1Q99720 223 aa12.07□□□□□ -0.48
C9orf3-222ENST00000496567 KRTAP13-3Q3SY46 172 aa12.06□□□□□ -0.48
C9orf3-222ENST00000496567 LINC00643Q86TS7 51 aa12.02□□□□□ -0.49
C9orf3-222ENST00000496567 LPAP08519 4548 aa11.99□□□□□ -0.49
C9orf3-222ENST00000496567 C9orf92A6NGG3 77 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 1416.7 ms