RNA–Protein interactions for RNA: ENST00000467468.5

SMC4-208, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-208ENST00000467468 PLCH1Q4KWH8 1693 aa-0.3□□□□□ -2.46
SMC4-208ENST00000467468 SRRM2Q9UQ35 2752 aaKnown RBP-0.31□□□□□ -2.46
SMC4-208ENST00000467468 TEP1Q99973 2627 aaKnown RBP-0.31□□□□□ -2.46
SMC4-208ENST00000467468 SETD2Q9BYW2 2564 aaPredicted RBP-0.31□□□□□ -2.46
SMC4-208ENST00000467468 ABCA8O94911 1581 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 MAP3K1Q13233 1512 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 H0YAA0 97 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 KRTAP19-8Q3LI54 63 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 KRTAP20-1Q3LI63 56 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 DEPDC5O75140 1603 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 KNL1Q8NG31 2342 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 RYR3Q15413 4870 aa-0.32□□□□□ -2.46
SMC4-208ENST00000467468 KRTAP6-2Q3LI66 62 aa-0.33□□□□□ -2.46
SMC4-208ENST00000467468 DDX60LQ5H9U9 1706 aaKnown RBP-0.33□□□□□ -2.46
SMC4-208ENST00000467468 USH2AO75445 5202 aa-0.33□□□□□ -2.46
SMC4-208ENST00000467468 SONP18583 2426 aaKnown RBP-0.34□□□□□ -2.46
SMC4-208ENST00000467468 RICTORQ6R327 1708 aa-0.34□□□□□ -2.46
SMC4-208ENST00000467468 FLGP20930 4061 aaPredicted RBP-0.35□□□□□ -2.47
SMC4-208ENST00000467468 TRANK1O15050 2925 aa-0.35□□□□□ -2.47
SMC4-208ENST00000467468 LYNX1G3V0Z9 82 aa-0.35□□□□□ -2.47
SMC4-208ENST00000467468 HIVEP1P15822 2718 aa-0.35□□□□□ -2.47
SMC4-208ENST00000467468 STAB2Q8WWQ8 2551 aa-0.36□□□□□ -2.47
SMC4-208ENST00000467468 PKD1P98161 4303 aa-0.36□□□□□ -2.47
SMC4-208ENST00000467468 DEFB131BA0A096LNP1 70 aa-0.36□□□□□ -2.47
SMC4-208ENST00000467468 DEFA5Q01523 94 aa-0.36□□□□□ -2.47
SMC4-208ENST00000467468 KIAA1109Q2LD37 5005 aa-0.36□□□□□ -2.47
SMC4-208ENST00000467468 UBR4Q5T4S7 5183 aa-0.36□□□□□ -2.47
SMC4-208ENST00000467468 AKAP13Q12802 2813 aa-0.37□□□□□ -2.47
SMC4-208ENST00000467468 EPG5Q9HCE0 2579 aa-0.37□□□□□ -2.47
SMC4-208ENST00000467468 RNF213Q63HN8 5207 aa-0.37□□□□□ -2.47
SMC4-208ENST00000467468 SVEP1Q4LDE5 3571 aa-0.37□□□□□ -2.47
SMC4-208ENST00000467468 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.38□□□□□ -2.47
SMC4-208ENST00000467468 RYR1P21817 5038 aa-0.38□□□□□ -2.47
SMC4-208ENST00000467468 DSPP15924 2871 aaKnown RBP-0.39□□□□□ -2.47
SMC4-208ENST00000467468 RIF1Q5UIP0 2472 aaKnown RBP-0.39□□□□□ -2.47
SMC4-208ENST00000467468 KCNQ1DNQ9H478 68 aa-0.39□□□□□ -2.47
SMC4-208ENST00000467468 HERC2O95714 4834 aa-0.39□□□□□ -2.47
SMC4-208ENST00000467468 NF1P21359 2839 aa-0.4□□□□□ -2.47
SMC4-208ENST00000467468 MAP1AP78559 2803 aaPredicted RBP-0.4□□□□□ -2.47
SMC4-208ENST00000467468 RALGAPBQ86X10 1494 aa-0.4□□□□□ -2.47
SMC4-208ENST00000467468 MRPL33O75394 65 aaKnown RBP-0.4□□□□□ -2.47
SMC4-208ENST00000467468 USP9XQ93008 2570 aaPredicted RBP-0.4□□□□□ -2.47
SMC4-208ENST00000467468 HERC1Q15751 4861 aa-0.4□□□□□ -2.47
SMC4-208ENST00000467468 USP9YO00507 2555 aaPredicted RBP-0.41□□□□□ -2.47
SMC4-208ENST00000467468 EPPK1P58107 5090 aaKnown RBP-0.41□□□□□ -2.47
SMC4-208ENST00000467468 LMTK2Q8IWU2 1503 aa-0.41□□□□□ -2.48
SMC4-208ENST00000467468 LYSTQ99698 3801 aa-0.41□□□□□ -2.48
SMC4-208ENST00000467468 HFM1A2PYH4 1435 aa-0.41□□□□□ -2.48
SMC4-208ENST00000467468 COL6A5A8TX70 2615 aa-0.41□□□□□ -2.48
SMC4-208ENST00000467468 THOC2Q8NI27 1593 aaKnown RBP-0.41□□□□□ -2.48
SMC4-208ENST00000467468 H3BVH4 76 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 DEFB130BP0DP73 79 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 DEFB130AP0DP74 79 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 SPRR2EP22531 72 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 UBL5Q9BZL1 73 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 TJP1Q07157 1748 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 ITSN1Q15811 1721 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 HYDINQ4G0P3 5121 aa-0.42□□□□□ -2.48
SMC4-208ENST00000467468 PDE4DIPQ5VU43 2346 aa-0.43□□□□□ -2.48
SMC4-208ENST00000467468 NIPBLQ6KC79 2804 aaeCLIP-0.43□□□□□ -2.488e-8■■■■■ 47
SMC4-208ENST00000467468 RYR2Q92736 4967 aa-0.43□□□□□ -2.48
SMC4-208ENST00000467468 MYO18BQ8IUG5 2567 aa-0.43□□□□□ -2.48
SMC4-208ENST00000467468 RNF17Q9BXT8 1623 aaKnown RBP-0.43□□□□□ -2.48
SMC4-208ENST00000467468 FAT1Q14517 4588 aa-0.43□□□□□ -2.48
SMC4-208ENST00000467468 NBEAL1Q6ZS30 2694 aa-0.43□□□□□ -2.48
SMC4-208ENST00000467468 IAPPP10997 89 aa-0.44□□□□□ -2.48
SMC4-208ENST00000467468 ENHOQ6UWT2 76 aa-0.44□□□□□ -2.48
SMC4-208ENST00000467468 NBEAL2Q6ZNJ1 2754 aa-0.44□□□□□ -2.48
SMC4-208ENST00000467468 PDZD2O15018 2839 aa-0.45□□□□□ -2.48
SMC4-208ENST00000467468 TNRC18O15417 2968 aaPredicted RBP-0.45□□□□□ -2.48
SMC4-208ENST00000467468 ZC3H13Q5T200 1668 aaKnown RBP-0.46□□□□□ -2.48
SMC4-208ENST00000467468 MYO5CQ9NQX4 1742 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 CRIP1P50238 77 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 LAMA2P24043 3122 aaKnown RBP-0.46□□□□□ -2.48
SMC4-208ENST00000467468 HECTD1Q9ULT8 2610 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 ABCA13Q86UQ4 5058 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 CELSR3Q9NYQ7 3312 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 TGP01266 2768 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 FASNP49327 2511 aaKnown RBP-0.46□□□□□ -2.48
SMC4-208ENST00000467468 MGAM2Q2M2H8 2515 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 LAMA5O15230 3695 aa-0.46□□□□□ -2.48
SMC4-208ENST00000467468 ITPR3Q14573 2671 aa-0.47□□□□□ -2.48
SMC4-208ENST00000467468 PRLHP81277 87 aa-0.47□□□□□ -2.48
SMC4-208ENST00000467468 FAT3Q8TDW7 4589 aa-0.47□□□□□ -2.48
SMC4-208ENST00000467468 LRRIQ1Q96JM4 1722 aa-0.47□□□□□ -2.49
SMC4-208ENST00000467468 PARP4Q9UKK3 1724 aaKnown RBP-0.47□□□□□ -2.49
SMC4-208ENST00000467468 CCDC168Q8NDH2 2452 aa-0.47□□□□□ -2.49
SMC4-208ENST00000467468 UGGT2Q9NYU1 1516 aa-0.48□□□□□ -2.49
SMC4-208ENST00000467468 DIP2AQ14689 1571 aa-0.48□□□□□ -2.49
SMC4-208ENST00000467468 C9orf92A6NGG3 77 aa-0.48□□□□□ -2.49
SMC4-208ENST00000467468 SMCO4Q9NRQ5 59 aa-0.48□□□□□ -2.49
SMC4-208ENST00000467468 STARD9Q9P2P6 4700 aa-0.49□□□□□ -2.49
SMC4-208ENST00000467468 IQGAP3Q86VI3 1631 aa-0.49□□□□□ -2.49
SMC4-208ENST00000467468 CDC42BPGQ6DT37 1551 aa-0.49□□□□□ -2.49
SMC4-208ENST00000467468 DNAH9Q9NYC9 4486 aa-0.5□□□□□ -2.49
SMC4-208ENST00000467468 H3BNG1 76 aa-0.5□□□□□ -2.49
SMC4-208ENST00000467468 PRRC2CQ9Y520 2896 aaKnown RBP-0.5□□□□□ -2.49
SMC4-208ENST00000467468 NBASA2RRP1 2371 aa-0.5□□□□□ -2.49
SMC4-208ENST00000467468 ETDCA0A1B0GVM5 59 aa-0.51□□□□□ -2.49
SMC4-208ENST00000467468 PDCD5O14737 125 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms