RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PSMB2P49721 201 aa13.1□□□□□ -0.31
CCDC28B-203ENST00000461819 F8WEM9 126 aa13.08□□□□□ -0.32
CCDC28B-203ENST00000461819 FAM218AQ96MZ4 157 aa13.08□□□□□ -0.32
CCDC28B-203ENST00000461819 M0R143 59 aa13.07□□□□□ -0.32
CCDC28B-203ENST00000461819 RPS29P62273 56 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-203ENST00000461819 LRP2P98164 4655 aa13.06□□□□□ -0.32
CCDC28B-203ENST00000461819 HRCT1Q6UXD1 115 aa13.05□□□□□ -0.32
CCDC28B-203ENST00000461819 COX6CP09669 75 aa13.04□□□□□ -0.32
CCDC28B-203ENST00000461819 PPDPFLQ8WWR9 84 aa13.04□□□□□ -0.32
CCDC28B-203ENST00000461819 A0A1B0GX51 115 aa13.03□□□□□ -0.32
CCDC28B-203ENST00000461819 OCIAD2Q56VL3 154 aa13.02□□□□□ -0.33
CCDC28B-203ENST00000461819 CLEC2BQ92478 149 aa13.02□□□□□ -0.33
CCDC28B-203ENST00000461819 LPAP08519 4548 aa13.02□□□□□ -0.33
CCDC28B-203ENST00000461819 SNHG12Q9BXW3 62 aa13.01□□□□□ -0.33
CCDC28B-203ENST00000461819 UBR4Q5T4S7 5183 aa13□□□□□ -0.33
CCDC28B-203ENST00000461819 LIMD2Q9BT23 127 aa12.98□□□□□ -0.33
CCDC28B-203ENST00000461819 IGLV7-46A0A075B6I9 117 aa12.97□□□□□ -0.33
CCDC28B-203ENST00000461819 A0A0G2JQZ4 141 aa12.97□□□□□ -0.33
CCDC28B-203ENST00000461819 DNAL4O96015 105 aa12.97□□□□□ -0.33
CCDC28B-203ENST00000461819 CD164Q04900 197 aa12.97□□□□□ -0.33
CCDC28B-203ENST00000461819 GHRHP01286 108 aa12.96□□□□□ -0.33
CCDC28B-203ENST00000461819 FP248Q71RG6 208 aaPredicted RBP12.96□□□□□ -0.33
CCDC28B-203ENST00000461819 SCGB1C2P0DMR2 95 aa12.94□□□□□ -0.34
CCDC28B-203ENST00000461819 Q6JHZ5 121 aa12.93□□□□□ -0.34
CCDC28B-203ENST00000461819 IGLV8-61A0A075B6I0 122 aa12.92□□□□□ -0.34
CCDC28B-203ENST00000461819 FABP2P12104 132 aa12.91□□□□□ -0.34
CCDC28B-203ENST00000461819 BATFQ16520 125 aa12.91□□□□□ -0.34
CCDC28B-203ENST00000461819 NDUFV3P56181 108 aaKnown RBP12.89□□□□□ -0.35
CCDC28B-203ENST00000461819 IGFL1Q6UW32 110 aa12.89□□□□□ -0.35
CCDC28B-203ENST00000461819 ORMDL1Q9P0S3 153 aa12.89□□□□□ -0.35
CCDC28B-203ENST00000461819 H3BUT2 72 aa12.88□□□□□ -0.35
CCDC28B-203ENST00000461819 TPRXLQ17RH7 258 aa12.87□□□□□ -0.35
CCDC28B-203ENST00000461819 NAA38Q9BRA0 125 aaKnown RBP12.85□□□□□ -0.35
CCDC28B-203ENST00000461819 H3BQ85 93 aa12.84□□□□□ -0.35
CCDC28B-203ENST00000461819 LST1O00453 97 aa12.84□□□□□ -0.35
CCDC28B-203ENST00000461819 TRACP01848 142 aa12.84□□□□□ -0.35
CCDC28B-203ENST00000461819 CDIP1Q9H305 208 aa12.83□□□□□ -0.36
CCDC28B-203ENST00000461819 H3BMG7 143 aa12.81□□□□□ -0.36
CCDC28B-203ENST00000461819 Q5XG85 94 aa12.81□□□□□ -0.36
CCDC28B-203ENST00000461819 TMEM256-PLSCR3K7ERE1 68 aa12.8□□□□□ -0.36
CCDC28B-203ENST00000461819 TCL1BO95988 128 aa12.8□□□□□ -0.36
CCDC28B-203ENST00000461819 TRBV7-7A0A0K0K1E9 115 aa12.78□□□□□ -0.36
CCDC28B-203ENST00000461819 KRTAP13-3Q3SY46 172 aa12.76□□□□□ -0.37
CCDC28B-203ENST00000461819 LYRM7Q5U5X0 104 aa12.76□□□□□ -0.37
CCDC28B-203ENST00000461819 A0A1B0GV72 72 aa12.75□□□□□ -0.37
CCDC28B-203ENST00000461819 ATXN8Q156A1 80 aa12.75□□□□□ -0.37
CCDC28B-203ENST00000461819 UBE2V1Q13404 147 aa12.72□□□□□ -0.37
CCDC28B-203ENST00000461819 C1orf195Q5TG92 126 aa12.72□□□□□ -0.37
CCDC28B-203ENST00000461819 RNF213Q63HN8 5207 aa12.71□□□□□ -0.37
CCDC28B-203ENST00000461819 TEN1Q86WV5 123 aa12.71□□□□□ -0.37
CCDC28B-203ENST00000461819 Q6Q795 121 aa12.7□□□□□ -0.38
CCDC28B-203ENST00000461819 BAALC-AS2P0C853 105 aa12.68□□□□□ -0.38
CCDC28B-203ENST00000461819 ANKRD29Q8N6D5 301 aa12.68□□□□□ -0.38
CCDC28B-203ENST00000461819 C9orf118A6NHY6 69 aa12.67□□□□□ -0.38
CCDC28B-203ENST00000461819 ASB16-AS1Q495Z4 193 aa12.67□□□□□ -0.38
CCDC28B-203ENST00000461819 TAX1BP3O14907 124 aa12.66□□□□□ -0.38
CCDC28B-203ENST00000461819 SS18L2Q9UHA2 77 aa12.66□□□□□ -0.38
CCDC28B-203ENST00000461819 TRBV20-1A0A075B6N2 111 aa12.65□□□□□ -0.38
CCDC28B-203ENST00000461819 A0A087WSZ3 146 aa12.62□□□□□ -0.39
CCDC28B-203ENST00000461819 A0A1W2PNM2 257 aa12.62□□□□□ -0.39
CCDC28B-203ENST00000461819 C9orf92A6NGG3 77 aa12.61□□□□□ -0.39
CCDC28B-203ENST00000461819 A0A1W2PPM0 123 aa12.6□□□□□ -0.39
CCDC28B-203ENST00000461819 RBM3P98179 157 aaKnown RBP12.6□□□□□ -0.39
CCDC28B-203ENST00000461819 DSCR8Q96T75 97 aa12.59□□□□□ -0.39
CCDC28B-203ENST00000461819 CCKP06307 115 aa12.58□□□□□ -0.4
CCDC28B-203ENST00000461819 MUC17Q685J3 4493 aa12.57□□□□□ -0.4
CCDC28B-203ENST00000461819 TRBV7-4A0A0J9YYF1 115 aa12.57□□□□□ -0.4
CCDC28B-203ENST00000461819 C9JAW5 83 aa12.57□□□□□ -0.4
CCDC28B-203ENST00000461819 COL5A1-AS1Q5SY13 56 aa12.56□□□□□ -0.4
CCDC28B-203ENST00000461819 XP32Q5T750 250 aa12.56□□□□□ -0.4
CCDC28B-203ENST00000461819 PCP4L1A6NKN8 68 aa12.55□□□□□ -0.4
CCDC28B-203ENST00000461819 VPS25Q9BRG1 176 aa12.55□□□□□ -0.4
CCDC28B-203ENST00000461819 JMJD7-PLA2G4BH0Y9G9 81 aa12.51□□□□□ -0.41
CCDC28B-203ENST00000461819 SEC61BP60468 96 aaKnown RBP12.48□□□□□ -0.41
CCDC28B-203ENST00000461819 SPCS1Q9Y6A9 102 aa12.47□□□□□ -0.41
CCDC28B-203ENST00000461819 MTURNQ8N3F0 131 aa12.46□□□□□ -0.41
CCDC28B-203ENST00000461819 H3BT86 120 aa12.45□□□□□ -0.42
CCDC28B-203ENST00000461819 Q96NJ1 140 aa12.45□□□□□ -0.42
CCDC28B-203ENST00000461819 MUC2Q02817 5179 aa12.44□□□□□ -0.42
CCDC28B-203ENST00000461819 SIGMAR1Q99720 223 aa12.43□□□□□ -0.42
CCDC28B-203ENST00000461819 C14orf132Q9NPU4 83 aa12.42□□□□□ -0.42
CCDC28B-203ENST00000461819 LOC110117498A0A087WWA1 95 aa12.41□□□□□ -0.42
CCDC28B-203ENST00000461819 Q6ZQT0 140 aa12.41□□□□□ -0.42
CCDC28B-203ENST00000461819 PDE6GP18545 87 aa12.4□□□□□ -0.42
CCDC28B-203ENST00000461819 C21orf62-AS1Q17RA5 79 aa12.39□□□□□ -0.43
CCDC28B-203ENST00000461819 OBSCN-AS1Q96MR7 158 aa12.39□□□□□ -0.43
CCDC28B-203ENST00000461819 IGKV4-1P06312 121 aa12.38□□□□□ -0.43
CCDC28B-203ENST00000461819 DEFB116Q30KQ4 102 aa12.34□□□□□ -0.43
CCDC28B-203ENST00000461819 LINC00472Q9H8W2 130 aa12.34□□□□□ -0.43
CCDC28B-203ENST00000461819 K7EP34 96 aa12.33□□□□□ -0.44
CCDC28B-203ENST00000461819 RPL37P61927 97 aaKnown RBP12.32□□□□□ -0.44
CCDC28B-203ENST00000461819 A0A0U1RQV1 116 aa12.31□□□□□ -0.44
CCDC28B-203ENST00000461819 A0A1B0GW54 56 aa12.31□□□□□ -0.44
CCDC28B-203ENST00000461819 PCOTHQ58A44 107 aa12.31□□□□□ -0.44
CCDC28B-203ENST00000461819 DSCR10P59022 87 aa12.26□□□□□ -0.45
CCDC28B-203ENST00000461819 SMCPP49901 116 aaPredicted RBP12.25□□□□□ -0.45
CCDC28B-203ENST00000461819 GTF2H5Q6ZYL4 71 aa12.25□□□□□ -0.45
CCDC28B-203ENST00000461819 J3KT08 172 aa12.24□□□□□ -0.45
CCDC28B-203ENST00000461819 KRTAP4-1Q9BYQ7 146 aa12.24□□□□□ -0.45
CCDC28B-203ENST00000461819 LINC00313P59037 77 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms