RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 A0A0G2JQZ4 141 aa5.22□□□□□ -1.57
PTPN3-204ENST00000446349 RPS29P62273 56 aaKnown RBP5.22□□□□□ -1.57
PTPN3-204ENST00000446349 GOLGB1Q14789 3259 aaKnown RBP5.22□□□□□ -1.57
PTPN3-204ENST00000446349 NBEAL1Q6ZS30 2694 aa5.2□□□□□ -1.58
PTPN3-204ENST00000446349 TEP1Q99973 2627 aaKnown RBP5.2□□□□□ -1.58
PTPN3-204ENST00000446349 Q1T7F1 81 aa5.2□□□□□ -1.58
PTPN3-204ENST00000446349 UNC79Q9P2D8 2635 aa5.2□□□□□ -1.58
PTPN3-204ENST00000446349 MMP24-AS1A0A0U1RRL7 71 aa5.19□□□□□ -1.58
PTPN3-204ENST00000446349 ITPR2Q14571 2701 aa5.19□□□□□ -1.58
PTPN3-204ENST00000446349 A0A0D9SG42 100 aa5.19□□□□□ -1.58
PTPN3-204ENST00000446349 Q6ZR54 194 aa5.18□□□□□ -1.58
PTPN3-204ENST00000446349 LINC00472Q9H8W2 130 aa5.18□□□□□ -1.58
PTPN3-204ENST00000446349 COL6A5A8TX70 2615 aa5.18□□□□□ -1.58
PTPN3-204ENST00000446349 A0A0A0MQY5 61 aa5.18□□□□□ -1.58
PTPN3-204ENST00000446349 SPINK7P58062 85 aa5.17□□□□□ -1.58
PTPN3-204ENST00000446349 TRANK1O15050 2925 aa5.16□□□□□ -1.58
PTPN3-204ENST00000446349 CHD6Q8TD26 2715 aa5.16□□□□□ -1.58
PTPN3-204ENST00000446349 KRTAP10-1P60331 282 aa5.16□□□□□ -1.58
PTPN3-204ENST00000446349 R4GN34 69 aa5.16□□□□□ -1.58
PTPN3-204ENST00000446349 SETXQ7Z333 2677 aaKnown RBP5.16□□□□□ -1.58
PTPN3-204ENST00000446349 KRTAP26-1Q6PEX3 210 aa5.16□□□□□ -1.58
PTPN3-204ENST00000446349 ASB16-AS1Q495Z4 193 aa5.14□□□□□ -1.59
PTPN3-204ENST00000446349 Q75L30 129 aa5.14□□□□□ -1.59
PTPN3-204ENST00000446349 Q5W150 140 aa5.13□□□□□ -1.59
PTPN3-204ENST00000446349 CHD7Q9P2D1 2997 aa5.13□□□□□ -1.59
PTPN3-204ENST00000446349 KRTAP1-5Q9BYS1 174 aa5.12□□□□□ -1.59
PTPN3-204ENST00000446349 CEP350Q5VT06 3117 aa5.11□□□□□ -1.59
PTPN3-204ENST00000446349 LINC01558Q9Y6Z2 57 aa5.11□□□□□ -1.59
PTPN3-204ENST00000446349 KRTAP10-2P60368 255 aa5.1□□□□□ -1.59
PTPN3-204ENST00000446349 C5orf42Q9H799 3197 aa5.1□□□□□ -1.59
PTPN3-204ENST00000446349 NSD1Q96L73 2696 aaPredicted RBP5.09□□□□□ -1.59
PTPN3-204ENST00000446349 PLAC4Q8WY50 150 aa5.08□□□□□ -1.6
PTPN3-204ENST00000446349 IGSF10Q6WRI0 2623 aa5.07□□□□□ -1.6
PTPN3-204ENST00000446349 Q5XG85 94 aa5.06□□□□□ -1.6
PTPN3-204ENST00000446349 KRTAP4-16G5E9R7 235 aaPredicted RBP5.04□□□□□ -1.6
PTPN3-204ENST00000446349 CHD9Q3L8U1 2897 aa5.04□□□□□ -1.6
PTPN3-204ENST00000446349 DMBT1Q9UGM3 2413 aaPredicted RBP5.04□□□□□ -1.6
PTPN3-204ENST00000446349 Q8N9P0 234 aaPredicted RBP5.04□□□□□ -1.6
PTPN3-204ENST00000446349 GCN1Q92616 2671 aaKnown RBP5.03□□□□□ -1.6
PTPN3-204ENST00000446349 RPL37P61927 97 aaKnown RBP5.02□□□□□ -1.61
PTPN3-204ENST00000446349 Q8NDZ9 215 aa5.02□□□□□ -1.61
PTPN3-204ENST00000446349 MGAQ8IWI9 3026 aa5.01□□□□□ -1.61
PTPN3-204ENST00000446349 NOTCH1P46531 2555 aa5.01□□□□□ -1.61
PTPN3-204ENST00000446349 STAB2Q8WWQ8 2551 aa5□□□□□ -1.61
PTPN3-204ENST00000446349 H1FX-AS1Q4G0G2 97 aa5□□□□□ -1.61
PTPN3-204ENST00000446349 MAP1AP78559 2803 aaPredicted RBP5□□□□□ -1.61
PTPN3-204ENST00000446349 Q6ZRN7 208 aaPredicted RBP4.99□□□□□ -1.61
PTPN3-204ENST00000446349 M0QZ58 72 aa4.99□□□□□ -1.61
PTPN3-204ENST00000446349 PCNTO95613 3336 aa4.97□□□□□ -1.61
PTPN3-204ENST00000446349 PANO1I0J062 215 aa4.96□□□□□ -1.62
PTPN3-204ENST00000446349 ROMO1P60602 79 aa4.95□□□□□ -1.62
PTPN3-204ENST00000446349 A0A087X002 238 aa4.94□□□□□ -1.62
PTPN3-204ENST00000446349 UTRNP46939 3433 aa4.92□□□□□ -1.62
PTPN3-204ENST00000446349 ADM2Q7Z4H4 148 aa4.92□□□□□ -1.62
PTPN3-204ENST00000446349 DSPP15924 2871 aaKnown RBP4.92□□□□□ -1.62
PTPN3-204ENST00000446349 KRTAP16-1A8MUX0 517 aa4.92□□□□□ -1.62
PTPN3-204ENST00000446349 KRTAP29-1A8MX34 341 aaPredicted RBP4.91□□□□□ -1.62
PTPN3-204ENST00000446349 UBR5O95071 2799 aaPredicted RBP4.89□□□□□ -1.63
PTPN3-204ENST00000446349 Q5VV11 94 aa4.89□□□□□ -1.63
PTPN3-204ENST00000446349 HTTP42858 3142 aa4.88□□□□□ -1.63
PTPN3-204ENST00000446349 PRAC1Q96KF2 57 aa4.87□□□□□ -1.63
PTPN3-204ENST00000446349 KRTAP13-1Q8IUC0 172 aa4.86□□□□□ -1.63
PTPN3-204ENST00000446349 CFAP54Q96N23 3096 aa4.85□□□□□ -1.63
PTPN3-204ENST00000446349 A8MUU9 505 aa4.84□□□□□ -1.64
PTPN3-204ENST00000446349 A0A0C4DFX4 3053 aa4.83□□□□□ -1.64
PTPN3-204ENST00000446349 C20orf166-AS1Q96NR2 134 aa4.82□□□□□ -1.64
PTPN3-204ENST00000446349 ITPR1Q14643 2758 aa4.82□□□□□ -1.64
PTPN3-204ENST00000446349 NBEAL2Q6ZNJ1 2754 aa4.81□□□□□ -1.64
PTPN3-204ENST00000446349 RANBP2P49792 3224 aaKnown RBP4.81□□□□□ -1.64
PTPN3-204ENST00000446349 NOTCH2NLQ7Z3S9 236 aa4.8□□□□□ -1.64
PTPN3-204ENST00000446349 UTP20O75691 2785 aaKnown RBP4.8□□□□□ -1.64
PTPN3-204ENST00000446349 APCP25054 2843 aa4.8□□□□□ -1.64
PTPN3-204ENST00000446349 KRTAP13-2Q52LG2 175 aa4.8□□□□□ -1.64
PTPN3-204ENST00000446349 PRUNE2Q8WUY3 3088 aa4.79□□□□□ -1.64
PTPN3-204ENST00000446349 HIVEP1P15822 2718 aa4.78□□□□□ -1.64
PTPN3-204ENST00000446349 SPATA8Q6RVD6 105 aa4.77□□□□□ -1.65
PTPN3-204ENST00000446349 WDFY4Q6ZS81 3184 aa4.76□□□□□ -1.65
PTPN3-204ENST00000446349 FRYQ5TBA9 3013 aa4.75□□□□□ -1.65
PTPN3-204ENST00000446349 FLNCQ14315 2725 aa4.75□□□□□ -1.65
PTPN3-204ENST00000446349 TPRXLQ17RH7 258 aa4.75□□□□□ -1.65
PTPN3-204ENST00000446349 TNP1P09430 55 aa4.74□□□□□ -1.65
PTPN3-204ENST00000446349 KRTAP11-1Q8IUC1 163 aa4.74□□□□□ -1.65
PTPN3-204ENST00000446349 LAMA2P24043 3122 aaKnown RBP4.73□□□□□ -1.65
PTPN3-204ENST00000446349 KRTAP7-1Q8IUC3 87 aa4.72□□□□□ -1.65
PTPN3-204ENST00000446349 MKI67P46013 3256 aaKnown RBP4.72□□□□□ -1.65
PTPN3-204ENST00000446349 VPS13AQ96RL7 3174 aa4.71□□□□□ -1.65
PTPN3-204ENST00000446349 CYSTM1Q9H1C7 97 aa4.71□□□□□ -1.66
PTPN3-204ENST00000446349 NIPBLQ6KC79 2804 aaeCLIP4.7□□□□□ -1.66
PTPN3-204ENST00000446349 LAMA3Q16787 3333 aa4.69□□□□□ -1.66
PTPN3-204ENST00000446349 FRYLO94915 3013 aa4.69□□□□□ -1.66
PTPN3-204ENST00000446349 LRBAP50851 2863 aa4.68□□□□□ -1.66
PTPN3-204ENST00000446349 PP632Q6XCG6 107 aa4.68□□□□□ -1.66
PTPN3-204ENST00000446349 TENM4Q6N022 2769 aa4.67□□□□□ -1.66
PTPN3-204ENST00000446349 KRTAP25-1Q3LHN0 102 aa4.66□□□□□ -1.66
PTPN3-204ENST00000446349 TRIOO75962 3097 aa4.66□□□□□ -1.66
PTPN3-204ENST00000446349 A6NN06 94 aa4.66□□□□□ -1.66
PTPN3-204ENST00000446349 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
PTPN3-204ENST00000446349 XP32Q5T750 250 aa4.63□□□□□ -1.67
PTPN3-204ENST00000446349 KRTAP1-4P0C5Y4 121 aa4.61□□□□□ -1.67
PTPN3-204ENST00000446349 CRYBG3Q68DQ2 2970 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms