RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 PIEZO1Q92508 2521 aa7.22□□□□□ -1.25
UBR4-205ENST00000417040 KRTAP1-5Q9BYS1 174 aa7.22□□□□□ -1.25
UBR4-205ENST00000417040 ROMO1P60602 79 aa7.2□□□□□ -1.26
UBR4-205ENST00000417040 H1FX-AS1Q4G0G2 97 aa7.18□□□□□ -1.26
UBR4-205ENST00000417040 M0R2T5 61 aa7.17□□□□□ -1.26
UBR4-205ENST00000417040 SPRR1BP22528 89 aa7.17□□□□□ -1.26
UBR4-205ENST00000417040 BRCA2P51587 3418 aa7.17□□□□□ -1.26
UBR4-205ENST00000417040 XIRP2A4UGR9 3374 aa7.16□□□□□ -1.26
UBR4-205ENST00000417040 DNAH14Q0VDD8 3507 aa7.16□□□□□ -1.26
UBR4-205ENST00000417040 A0A0A0MQY5 61 aa7.15□□□□□ -1.26
UBR4-205ENST00000417040 RPL37P61927 97 aaKnown RBP7.14□□□□□ -1.27
UBR4-205ENST00000417040 R4GN34 69 aa7.13□□□□□ -1.27
UBR4-205ENST00000417040 A0A087X002 238 aa7.13□□□□□ -1.27
UBR4-205ENST00000417040 NOTCH2NLQ7Z3S9 236 aa7.13□□□□□ -1.27
UBR4-205ENST00000417040 LAMA2P24043 3122 aaKnown RBP7.12□□□□□ -1.27
UBR4-205ENST00000417040 PANO1I0J062 215 aa7.12□□□□□ -1.27
UBR4-205ENST00000417040 A8MU10 97 aa7.12□□□□□ -1.27
UBR4-205ENST00000417040 FASNP49327 2511 aaKnown RBP7.11□□□□□ -1.27
UBR4-205ENST00000417040 TRIOO75962 3097 aa7.11□□□□□ -1.27
UBR4-205ENST00000417040 ADM2Q7Z4H4 148 aa7.11□□□□□ -1.27
UBR4-205ENST00000417040 Q6ZR54 194 aa7.11□□□□□ -1.27
UBR4-205ENST00000417040 CELSR3Q9NYQ7 3312 aa7.11□□□□□ -1.27
UBR4-205ENST00000417040 KRTAP29-1A8MX34 341 aaPredicted RBP7.1□□□□□ -1.27
UBR4-205ENST00000417040 KRTAP4-16G5E9R7 235 aaPredicted RBP7.08□□□□□ -1.28
UBR4-205ENST00000417040 KRTAP10-2P60368 255 aa7.07□□□□□ -1.28
UBR4-205ENST00000417040 M0QZ58 72 aa7.07□□□□□ -1.28
UBR4-205ENST00000417040 A6NN06 94 aa7.07□□□□□ -1.28
UBR4-205ENST00000417040 HTTP42858 3142 aa7.06□□□□□ -1.28
UBR4-205ENST00000417040 FREM2Q5SZK8 3169 aa7.05□□□□□ -1.28
UBR4-205ENST00000417040 LAMA3Q16787 3333 aa7.05□□□□□ -1.28
UBR4-205ENST00000417040 KRTAP10-1P60331 282 aa7.05□□□□□ -1.28
UBR4-205ENST00000417040 UNC80Q8N2C7 3258 aa7.04□□□□□ -1.28
UBR4-205ENST00000417040 KRTAP11-1Q8IUC1 163 aa7.02□□□□□ -1.28
UBR4-205ENST00000417040 CDH23Q9H251 3354 aa7.01□□□□□ -1.29
UBR4-205ENST00000417040 RANBP2P49792 3224 aaKnown RBP6.99□□□□□ -1.29
UBR4-205ENST00000417040 KRTAP25-1Q3LHN0 102 aa6.99□□□□□ -1.29
UBR4-205ENST00000417040 SZT2Q5T011 3432 aa6.98□□□□□ -1.29
UBR4-205ENST00000417040 USP24Q9UPU5 2620 aa6.96□□□□□ -1.29
UBR4-205ENST00000417040 Q5VSD8 79 aa6.95□□□□□ -1.3
UBR4-205ENST00000417040 CHD9Q3L8U1 2897 aa6.95□□□□□ -1.3
UBR4-205ENST00000417040 KRTAP16-1A8MUX0 517 aa6.94□□□□□ -1.3
UBR4-205ENST00000417040 ASB16-AS1Q495Z4 193 aa6.93□□□□□ -1.3
UBR4-205ENST00000417040 KRTAP7-1Q8IUC3 87 aa6.92□□□□□ -1.3
UBR4-205ENST00000417040 EPG5Q9HCE0 2579 aa6.92□□□□□ -1.3
UBR4-205ENST00000417040 VPS13AQ96RL7 3174 aa6.91□□□□□ -1.3
UBR4-205ENST00000417040 FLNAP21333 2647 aaKnown RBP6.9□□□□□ -1.31
UBR4-205ENST00000417040 MGAQ8IWI9 3026 aa6.89□□□□□ -1.31
UBR4-205ENST00000417040 NDUFAF8A1L188 74 aa6.89□□□□□ -1.31
UBR4-205ENST00000417040 PRUNE2Q8WUY3 3088 aa6.88□□□□□ -1.31
UBR4-205ENST00000417040 LCE6AA0A183 80 aa6.87□□□□□ -1.31
UBR4-205ENST00000417040 ITPR3Q14573 2671 aa6.86□□□□□ -1.31
UBR4-205ENST00000417040 HECTD1Q9ULT8 2610 aa6.85□□□□□ -1.31
UBR4-205ENST00000417040 WDFY4Q6ZS81 3184 aa6.85□□□□□ -1.31
UBR4-205ENST00000417040 VCANP13611 3396 aa6.85□□□□□ -1.31
UBR4-205ENST00000417040 SEC61BP60468 96 aaKnown RBP6.84□□□□□ -1.31
UBR4-205ENST00000417040 MGAM2Q2M2H8 2515 aa6.84□□□□□ -1.31
UBR4-205ENST00000417040 COL6A3P12111 3177 aa6.83□□□□□ -1.32
UBR4-205ENST00000417040 PLAC4Q8WY50 150 aa6.81□□□□□ -1.32
UBR4-205ENST00000417040 FRYQ5TBA9 3013 aa6.81□□□□□ -1.32
UBR4-205ENST00000417040 C20orf166-AS1Q96NR2 134 aa6.81□□□□□ -1.32
UBR4-205ENST00000417040 REV3LO60673 3130 aa6.81□□□□□ -1.32
UBR4-205ENST00000417040 ATRQ13535 2644 aa6.77□□□□□ -1.33
UBR4-205ENST00000417040 CHD6Q8TD26 2715 aa6.76□□□□□ -1.33
UBR4-205ENST00000417040 A8MUU9 505 aa6.76□□□□□ -1.33
UBR4-205ENST00000417040 KRTAP13-2Q52LG2 175 aa6.75□□□□□ -1.33
UBR4-205ENST00000417040 KALRNO60229 2985 aa6.72□□□□□ -1.33
UBR4-205ENST00000417040 LAMA1P25391 3075 aa6.72□□□□□ -1.33
UBR4-205ENST00000417040 TRANK1O15050 2925 aa6.71□□□□□ -1.34
UBR4-205ENST00000417040 AKAP13Q12802 2813 aa6.7□□□□□ -1.34
UBR4-205ENST00000417040 Q6ZRN7 208 aaPredicted RBP6.69□□□□□ -1.34
UBR4-205ENST00000417040 C10orf95Q9H7T3 257 aa6.68□□□□□ -1.34
UBR4-205ENST00000417040 KRTAP13-1Q8IUC0 172 aa6.68□□□□□ -1.34
UBR4-205ENST00000417040 NBEAL2Q6ZNJ1 2754 aa6.67□□□□□ -1.34
UBR4-205ENST00000417040 GCN1Q92616 2671 aaKnown RBP6.67□□□□□ -1.34
UBR4-205ENST00000417040 SPEGQ15772 3267 aa6.65□□□□□ -1.35
UBR4-205ENST00000417040 SPTBN5Q9NRC6 3674 aaKnown RBP6.62□□□□□ -1.35
UBR4-205ENST00000417040 CFAP47Q6ZTR5 3102 aa6.62□□□□□ -1.35
UBR4-205ENST00000417040 CFAP46Q8IYW2 2715 aa6.61□□□□□ -1.35
UBR4-205ENST00000417040 DSPP15924 2871 aaKnown RBP6.6□□□□□ -1.35
UBR4-205ENST00000417040 USP34Q70CQ2 3546 aa6.6□□□□□ -1.35
UBR4-205ENST00000417040 MAST4O15021 2626 aa6.59□□□□□ -1.35
UBR4-205ENST00000417040 LRBAP50851 2863 aa6.59□□□□□ -1.35
UBR4-205ENST00000417040 NBEAL1Q6ZS30 2694 aa6.59□□□□□ -1.35
UBR4-205ENST00000417040 UNC79Q9P2D8 2635 aa6.58□□□□□ -1.36
UBR4-205ENST00000417040 FRYLO94915 3013 aa6.56□□□□□ -1.36
UBR4-205ENST00000417040 RPS29P62273 56 aaKnown RBP6.56□□□□□ -1.36
UBR4-205ENST00000417040 DMBT1Q9UGM3 2413 aaPredicted RBP6.55□□□□□ -1.36
UBR4-205ENST00000417040 NBEAQ8NFP9 2946 aa6.55□□□□□ -1.36
UBR4-205ENST00000417040 MYO15AQ9UKN7 3530 aa6.55□□□□□ -1.36
UBR4-205ENST00000417040 CENPEQ02224 2701 aa6.55□□□□□ -1.36
UBR4-205ENST00000417040 TEX15Q9BXT5 2789 aa6.54□□□□□ -1.36
UBR4-205ENST00000417040 FLNBO75369 2602 aaKnown RBP6.53□□□□□ -1.36
UBR4-205ENST00000417040 H0YAA0 97 aa6.53□□□□□ -1.36
UBR4-205ENST00000417040 BOD1L1Q8NFC6 3051 aa6.51□□□□□ -1.37
UBR4-205ENST00000417040 HELZ2Q9BYK8 2649 aaKnown RBP6.5□□□□□ -1.37
UBR4-205ENST00000417040 TNP1P09430 55 aa6.49□□□□□ -1.37
UBR4-205ENST00000417040 FLG2Q5D862 2391 aaPredicted RBP6.48□□□□□ -1.37
UBR4-205ENST00000417040 MAP1AP78559 2803 aaPredicted RBP6.47□□□□□ -1.37
UBR4-205ENST00000417040 ZZEF1O43149 2961 aa6.46□□□□□ -1.37
UBR4-205ENST00000417040 ADGRG4Q8IZF6 3080 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 224.3 ms