RNA–Protein interactions for RNA: ENST00000397408.5

TSPAN4-206, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TSPAN4, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-206ENST00000397408 SNCGO76070 127 aa12.08□□□□□ -0.48
TSPAN4-206ENST00000397408 UBR4Q5T4S7 5183 aa12.08□□□□□ -0.48
TSPAN4-206ENST00000397408 PSMB2P49721 201 aa12.07□□□□□ -0.48
TSPAN4-206ENST00000397408 LPAP08519 4548 aa12.06□□□□□ -0.48
TSPAN4-206ENST00000397408 F8WEM9 126 aa12.06□□□□□ -0.48
TSPAN4-206ENST00000397408 HRCT1Q6UXD1 115 aa12.06□□□□□ -0.48
TSPAN4-206ENST00000397408 TSTD3H0UI37 97 aa12.05□□□□□ -0.48
TSPAN4-206ENST00000397408 M0R143 59 aa12.04□□□□□ -0.48
TSPAN4-206ENST00000397408 PPDPFLQ8WWR9 84 aa12.04□□□□□ -0.48
TSPAN4-206ENST00000397408 A0A1B0GX51 115 aa12.03□□□□□ -0.48
TSPAN4-206ENST00000397408 CLEC2BQ92478 149 aa12.03□□□□□ -0.48
TSPAN4-206ENST00000397408 IGLV7-46A0A075B6I9 117 aa12.02□□□□□ -0.49
TSPAN4-206ENST00000397408 A0A0G2JQZ4 141 aa12.02□□□□□ -0.49
TSPAN4-206ENST00000397408 OCIAD2Q56VL3 154 aa12.02□□□□□ -0.49
TSPAN4-206ENST00000397408 COX6CP09669 75 aa12.01□□□□□ -0.49
TSPAN4-206ENST00000397408 SNHG12Q9BXW3 62 aa12□□□□□ -0.49
TSPAN4-206ENST00000397408 CD164Q04900 197 aa11.99□□□□□ -0.49
TSPAN4-206ENST00000397408 FP248Q71RG6 208 aaPredicted RBP11.99□□□□□ -0.49
TSPAN4-206ENST00000397408 LIMD2Q9BT23 127 aa11.98□□□□□ -0.49
TSPAN4-206ENST00000397408 IGLV8-61A0A075B6I0 122 aa11.96□□□□□ -0.49
TSPAN4-206ENST00000397408 DNAL4O96015 105 aa11.95□□□□□ -0.5
TSPAN4-206ENST00000397408 Q6JHZ5 121 aa11.94□□□□□ -0.5
TSPAN4-206ENST00000397408 H3BUT2 72 aa11.93□□□□□ -0.5
TSPAN4-206ENST00000397408 GHRHP01286 108 aa11.93□□□□□ -0.5
TSPAN4-206ENST00000397408 TPRXLQ17RH7 258 aa11.93□□□□□ -0.5
TSPAN4-206ENST00000397408 SCGB1C2P0DMR2 95 aa11.92□□□□□ -0.5
TSPAN4-206ENST00000397408 IGFL1Q6UW32 110 aa11.92□□□□□ -0.5
TSPAN4-206ENST00000397408 FABP2P12104 132 aa11.91□□□□□ -0.5
TSPAN4-206ENST00000397408 NDUFV3P56181 108 aaKnown RBP11.9□□□□□ -0.5
TSPAN4-206ENST00000397408 BATFQ16520 125 aa11.89□□□□□ -0.51
TSPAN4-206ENST00000397408 ORMDL1Q9P0S3 153 aa11.89□□□□□ -0.51
TSPAN4-206ENST00000397408 NAA38Q9BRA0 125 aaKnown RBP11.87□□□□□ -0.51
TSPAN4-206ENST00000397408 LST1O00453 97 aa11.86□□□□□ -0.51
TSPAN4-206ENST00000397408 Q5XG85 94 aa11.86□□□□□ -0.51
TSPAN4-206ENST00000397408 CDIP1Q9H305 208 aa11.86□□□□□ -0.51
TSPAN4-206ENST00000397408 TRACP01848 142 aa11.86□□□□□ -0.51
TSPAN4-206ENST00000397408 H3BMG7 143 aa11.84□□□□□ -0.51
TSPAN4-206ENST00000397408 H3BQ85 93 aa11.84□□□□□ -0.51
TSPAN4-206ENST00000397408 KRTAP13-3Q3SY46 172 aa11.84□□□□□ -0.51
TSPAN4-206ENST00000397408 TRBV7-7A0A0K0K1E9 115 aa11.82□□□□□ -0.52
TSPAN4-206ENST00000397408 TMEM256-PLSCR3K7ERE1 68 aa11.81□□□□□ -0.52
TSPAN4-206ENST00000397408 TCL1BO95988 128 aa11.81□□□□□ -0.52
TSPAN4-206ENST00000397408 A0A1B0GV72 72 aa11.78□□□□□ -0.52
TSPAN4-206ENST00000397408 C1orf195Q5TG92 126 aa11.78□□□□□ -0.52
TSPAN4-206ENST00000397408 RNF213Q63HN8 5207 aa11.77□□□□□ -0.53
TSPAN4-206ENST00000397408 ATXN8Q156A1 80 aa11.76□□□□□ -0.53
TSPAN4-206ENST00000397408 UBE2V1Q13404 147 aa11.75□□□□□ -0.53
TSPAN4-206ENST00000397408 Q6Q795 121 aa11.75□□□□□ -0.53
TSPAN4-206ENST00000397408 LYRM7Q5U5X0 104 aa11.74□□□□□ -0.53
TSPAN4-206ENST00000397408 TEN1Q86WV5 123 aa11.73□□□□□ -0.53
TSPAN4-206ENST00000397408 ASB16-AS1Q495Z4 193 aa11.72□□□□□ -0.53
TSPAN4-206ENST00000397408 BAALC-AS2P0C853 105 aa11.7□□□□□ -0.54
TSPAN4-206ENST00000397408 ANKRD29Q8N6D5 301 aa11.7□□□□□ -0.54
TSPAN4-206ENST00000397408 TAX1BP3O14907 124 aa11.69□□□□□ -0.54
TSPAN4-206ENST00000397408 A0A1W2PNM2 257 aa11.69□□□□□ -0.54
TSPAN4-206ENST00000397408 C9orf118A6NHY6 69 aa11.69□□□□□ -0.54
TSPAN4-206ENST00000397408 A0A087WSZ3 146 aa11.68□□□□□ -0.54
TSPAN4-206ENST00000397408 SS18L2Q9UHA2 77 aa11.68□□□□□ -0.54
TSPAN4-206ENST00000397408 TRBV20-1A0A075B6N2 111 aa11.66□□□□□ -0.54
TSPAN4-206ENST00000397408 C9orf92A6NGG3 77 aa11.66□□□□□ -0.54
TSPAN4-206ENST00000397408 XP32Q5T750 250 aa11.64□□□□□ -0.55
TSPAN4-206ENST00000397408 A0A1W2PPM0 123 aa11.63□□□□□ -0.55
TSPAN4-206ENST00000397408 RBM3P98179 157 aaKnown RBP11.63□□□□□ -0.55
TSPAN4-206ENST00000397408 TRBV7-4A0A0J9YYF1 115 aa11.61□□□□□ -0.55
TSPAN4-206ENST00000397408 CCKP06307 115 aa11.61□□□□□ -0.55
TSPAN4-206ENST00000397408 MUC17Q685J3 4493 aa11.61□□□□□ -0.55
TSPAN4-206ENST00000397408 C9JAW5 83 aa11.6□□□□□ -0.55
TSPAN4-206ENST00000397408 DSCR8Q96T75 97 aa11.6□□□□□ -0.55
TSPAN4-206ENST00000397408 VPS25Q9BRG1 176 aa11.57□□□□□ -0.56
TSPAN4-206ENST00000397408 COL5A1-AS1Q5SY13 56 aa11.56□□□□□ -0.56
TSPAN4-206ENST00000397408 PCP4L1A6NKN8 68 aa11.55□□□□□ -0.56
TSPAN4-206ENST00000397408 SEC61BP60468 96 aaKnown RBP11.55□□□□□ -0.56
TSPAN4-206ENST00000397408 MUC2Q02817 5179 aa11.54□□□□□ -0.56
TSPAN4-206ENST00000397408 JMJD7-PLA2G4BH0Y9G9 81 aa11.53□□□□□ -0.56
TSPAN4-206ENST00000397408 Q96NJ1 140 aa11.53□□□□□ -0.56
TSPAN4-206ENST00000397408 MTURNQ8N3F0 131 aa11.51□□□□□ -0.57
TSPAN4-206ENST00000397408 SPCS1Q9Y6A9 102 aa11.51□□□□□ -0.57
TSPAN4-206ENST00000397408 H3BT86 120 aa11.48□□□□□ -0.57
TSPAN4-206ENST00000397408 Q6ZQT0 140 aa11.47□□□□□ -0.57
TSPAN4-206ENST00000397408 SIGMAR1Q99720 223 aa11.47□□□□□ -0.57
TSPAN4-206ENST00000397408 C14orf132Q9NPU4 83 aa11.47□□□□□ -0.57
TSPAN4-206ENST00000397408 LOC110117498A0A087WWA1 95 aa11.46□□□□□ -0.57
TSPAN4-206ENST00000397408 OBSCN-AS1Q96MR7 158 aa11.45□□□□□ -0.58
TSPAN4-206ENST00000397408 IGKV4-1P06312 121 aa11.43□□□□□ -0.58
TSPAN4-206ENST00000397408 PDE6GP18545 87 aa11.43□□□□□ -0.58
TSPAN4-206ENST00000397408 LINC00472Q9H8W2 130 aa11.43□□□□□ -0.58
TSPAN4-206ENST00000397408 PCOTHQ58A44 107 aa11.42□□□□□ -0.58
TSPAN4-206ENST00000397408 RPL37P61927 97 aaKnown RBP11.41□□□□□ -0.58
TSPAN4-206ENST00000397408 C21orf62-AS1Q17RA5 79 aa11.41□□□□□ -0.58
TSPAN4-206ENST00000397408 DEFB116Q30KQ4 102 aa11.41□□□□□ -0.58
TSPAN4-206ENST00000397408 KRTAP4-1Q9BYQ7 146 aa11.39□□□□□ -0.59
TSPAN4-206ENST00000397408 A0A0U1RQV1 116 aa11.37□□□□□ -0.59
TSPAN4-206ENST00000397408 K7EP34 96 aa11.37□□□□□ -0.59
TSPAN4-206ENST00000397408 A0A1B0GW54 56 aa11.35□□□□□ -0.59
TSPAN4-206ENST00000397408 DSCR10P59022 87 aa11.35□□□□□ -0.59
TSPAN4-206ENST00000397408 SMCPP49901 116 aaPredicted RBP11.33□□□□□ -0.6
TSPAN4-206ENST00000397408 Q75L30 129 aa11.31□□□□□ -0.6
TSPAN4-206ENST00000397408 PRO0461Q9UI25 63 aa11.3□□□□□ -0.6
TSPAN4-206ENST00000397408 IGHV6-1A0A0B4J1U7 121 aa11.28□□□□□ -0.6
TSPAN4-206ENST00000397408 J3KT08 172 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms