RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 FREM2Q5SZK8 3169 aa3.09□□□□□ -1.92
PCDH9-201ENST00000377861 KRTAP1-1Q07627 177 aa3.09□□□□□ -1.92
PCDH9-201ENST00000377861 RTL8CO15255 209 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 PRLHP81277 87 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 TYMSOSQ8TAI1 123 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 PRB1P04280 392 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 A0A087WTM6 91 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 A0A096LNI7 61 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 NOTCH2NLQ7Z3S9 236 aa3.08□□□□□ -1.92
PCDH9-201ENST00000377861 RETNQ9HD89 108 aa3.07□□□□□ -1.92
PCDH9-201ENST00000377861 APCP25054 2843 aa3.07□□□□□ -1.92
PCDH9-201ENST00000377861 APLNQ9ULZ1 77 aa3.07□□□□□ -1.92
PCDH9-201ENST00000377861 PRUNE2Q8WUY3 3088 aa3.07□□□□□ -1.92
PCDH9-201ENST00000377861 COL12A1Q99715 3063 aa3.07□□□□□ -1.92
PCDH9-201ENST00000377861 SPACA4Q8TDM5 124 aa3.07□□□□□ -1.92
PCDH9-201ENST00000377861 LY6G6CO95867 125 aa3.06□□□□□ -1.92
PCDH9-201ENST00000377861 SPATA8Q6RVD6 105 aa3.06□□□□□ -1.92
PCDH9-201ENST00000377861 VPS13AQ96RL7 3174 aa3.06□□□□□ -1.92
PCDH9-201ENST00000377861 FRYLO94915 3013 aa3.06□□□□□ -1.92
PCDH9-201ENST00000377861 ANAPC11Q9NYG5 84 aa3.06□□□□□ -1.92
PCDH9-201ENST00000377861 A0A1W2PNN7 141 aa3.05□□□□□ -1.92
PCDH9-201ENST00000377861 A0A1B0GU33 70 aa3.05□□□□□ -1.92
PCDH9-201ENST00000377861 PCOTHQ58A44 107 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 LRCOL1A6NCL2 159 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 STAB2Q8WWQ8 2551 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 KRTAP21-3Q3LHN1 58 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 TENM4Q6N022 2769 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 DMXL2Q8TDJ6 3036 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 LINC01554Q52M75 96 aa3.04□□□□□ -1.92
PCDH9-201ENST00000377861 ASH1LQ9NR48 2969 aaKnown RBP3.04□□□□□ -1.92
PCDH9-201ENST00000377861 WDFY4Q6ZS81 3184 aa3.03□□□□□ -1.92
PCDH9-201ENST00000377861 Q5VV11 94 aa3.03□□□□□ -1.92
PCDH9-201ENST00000377861 LINC00304Q8N9R0 145 aa3.03□□□□□ -1.92
PCDH9-201ENST00000377861 HIVEP1P15822 2718 aa3.03□□□□□ -1.92
PCDH9-201ENST00000377861 MMP24-AS1A0A0U1RRL7 71 aa3.03□□□□□ -1.92
PCDH9-201ENST00000377861 KRTAP10-11P60412 298 aa3.02□□□□□ -1.93
PCDH9-201ENST00000377861 KRTAP24-1Q3LI83 254 aa3.02□□□□□ -1.93
PCDH9-201ENST00000377861 Q96NJ1 140 aa3.02□□□□□ -1.93
PCDH9-201ENST00000377861 IGKV2D-30A0A075B6S6 120 aa3.01□□□□□ -1.93
PCDH9-201ENST00000377861 IGKV2-30P06310 120 aa3.01□□□□□ -1.93
PCDH9-201ENST00000377861 PRR4Q16378 134 aa3.01□□□□□ -1.93
PCDH9-201ENST00000377861 BOD1L1Q8NFC6 3051 aa3.01□□□□□ -1.93
PCDH9-201ENST00000377861 DCHS2Q6V1P9 2916 aa3.01□□□□□ -1.93
PCDH9-201ENST00000377861 K7EIL1 84 aa3.01□□□□□ -1.93
PCDH9-201ENST00000377861 LRBAP50851 2863 aa3□□□□□ -1.93
PCDH9-201ENST00000377861 M0QZ58 72 aa2.99□□□□□ -1.93
PCDH9-201ENST00000377861 KRTAP13-1Q8IUC0 172 aa2.99□□□□□ -1.93
PCDH9-201ENST00000377861 DEFB116Q30KQ4 102 aa2.99□□□□□ -1.93
PCDH9-201ENST00000377861 LUZP6Q538Z0 58 aa2.99□□□□□ -1.93
PCDH9-201ENST00000377861 HRES1P13985 223 aa2.99□□□□□ -1.93
PCDH9-201ENST00000377861 LAMA1P25391 3075 aa2.98□□□□□ -1.93
PCDH9-201ENST00000377861 CSAG1Q6PB30 78 aa2.98□□□□□ -1.93
PCDH9-201ENST00000377861 TENM3Q9P273 2699 aa2.98□□□□□ -1.93
PCDH9-201ENST00000377861 ZANQ9Y493 2812 aa2.98□□□□□ -1.93
PCDH9-201ENST00000377861 KRTAP10-3P60369 221 aa2.98□□□□□ -1.93
PCDH9-201ENST00000377861 FAM168BA1KXE4 195 aa2.97□□□□□ -1.93
PCDH9-201ENST00000377861 CELSR2Q9HCU4 2923 aa2.97□□□□□ -1.93
PCDH9-201ENST00000377861 SMR3AQ99954 134 aa2.96□□□□□ -1.93
PCDH9-201ENST00000377861 COL27A1Q8IZC6 1860 aaPredicted RBP2.96□□□□□ -1.93
PCDH9-201ENST00000377861 RPL37P61927 97 aaKnown RBP2.96□□□□□ -1.94
PCDH9-201ENST00000377861 CHTF8P0CG12 524 aa2.95□□□□□ -1.94
PCDH9-201ENST00000377861 BAHCC1Q9P281 2608 aa2.95□□□□□ -1.94
PCDH9-201ENST00000377861 Q8NDZ9 215 aa2.94□□□□□ -1.94
PCDH9-201ENST00000377861 KMT2BQ9UMN6 2715 aaPredicted RBP2.94□□□□□ -1.94
PCDH9-201ENST00000377861 UTRNP46939 3433 aa2.94□□□□□ -1.94
PCDH9-201ENST00000377861 REV3LO60673 3130 aa2.93□□□□□ -1.94
PCDH9-201ENST00000377861 A6NN06 94 aa2.93□□□□□ -1.94
PCDH9-201ENST00000377861 PP632Q6XCG6 107 aa2.92□□□□□ -1.94
PCDH9-201ENST00000377861 Q5W150 140 aa2.92□□□□□ -1.94
PCDH9-201ENST00000377861 ROMO1P60602 79 aa2.91□□□□□ -1.94
PCDH9-201ENST00000377861 OXTP01178 125 aa2.91□□□□□ -1.94
PCDH9-201ENST00000377861 C5orf42Q9H799 3197 aa2.91□□□□□ -1.94
PCDH9-201ENST00000377861 CYSTM1Q9H1C7 97 aa2.91□□□□□ -1.94
PCDH9-201ENST00000377861 CRYBG3Q68DQ2 2970 aa2.9□□□□□ -1.94
PCDH9-201ENST00000377861 SPINK7P58062 85 aa2.9□□□□□ -1.95
PCDH9-201ENST00000377861 LAMA3Q16787 3333 aa2.89□□□□□ -1.95
PCDH9-201ENST00000377861 Q6ZSA8 131 aa2.88□□□□□ -1.95
PCDH9-201ENST00000377861 Q6ZRN7 208 aaPredicted RBP2.88□□□□□ -1.95
PCDH9-201ENST00000377861 SEC61BP60468 96 aaKnown RBP2.88□□□□□ -1.95
PCDH9-201ENST00000377861 PDZD2O15018 2839 aa2.87□□□□□ -1.95
PCDH9-201ENST00000377861 C20orf166-AS1Q96NR2 134 aa2.87□□□□□ -1.95
PCDH9-201ENST00000377861 A0A0A0MQY5 61 aa2.87□□□□□ -1.95
PCDH9-201ENST00000377861 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.87□□□□□ -1.95
PCDH9-201ENST00000377861 VWFP04275 2813 aa2.86□□□□□ -1.95
PCDH9-201ENST00000377861 PANO1I0J062 215 aa2.86□□□□□ -1.95
PCDH9-201ENST00000377861 H1FX-AS1Q4G0G2 97 aa2.86□□□□□ -1.95
PCDH9-201ENST00000377861 CASC10Q5T4H9 136 aa2.86□□□□□ -1.95
PCDH9-201ENST00000377861 UNC80Q8N2C7 3258 aa2.85□□□□□ -1.95
PCDH9-201ENST00000377861 FBN1P35555 2871 aaKnown RBP2.85□□□□□ -1.95
PCDH9-201ENST00000377861 FBN2P35556 2912 aa2.85□□□□□ -1.95
PCDH9-201ENST00000377861 A8MUU9 505 aa2.85□□□□□ -1.95
PCDH9-201ENST00000377861 SPINT4Q6UDR6 99 aa2.84□□□□□ -1.95
PCDH9-201ENST00000377861 MKI67P46013 3256 aaKnown RBP2.84□□□□□ -1.95
PCDH9-201ENST00000377861 PRB2P02812 416 aaPredicted RBP2.83□□□□□ -1.96
PCDH9-201ENST00000377861 TGP01266 2768 aa2.83□□□□□ -1.96
PCDH9-201ENST00000377861 KRTAP7-1Q8IUC3 87 aa2.83□□□□□ -1.96
PCDH9-201ENST00000377861 VCANP13611 3396 aa2.83□□□□□ -1.96
PCDH9-201ENST00000377861 CR1P17927 2039 aa2.83□□□□□ -1.96
PCDH9-201ENST00000377861 CAMK2N1Q7Z7J9 78 aa2.83□□□□□ -1.96
PCDH9-201ENST00000377861 XIRP2A4UGR9 3374 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms