RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 RPL37P61927 97 aaKnown RBP9.6□□□□□ -0.87
COL5A1-201ENST00000371817 COL6A5A8TX70 2615 aa9.59□□□□□ -0.87
COL5A1-201ENST00000371817 A0A087WTM6 91 aa9.59□□□□□ -0.87
COL5A1-201ENST00000371817 A0A096LNT2 108 aa9.58□□□□□ -0.88
COL5A1-201ENST00000371817 MMP24-AS1A0A0U1RRL7 71 aa9.58□□□□□ -0.88
COL5A1-201ENST00000371817 S4R3F8 94 aa9.58□□□□□ -0.88
COL5A1-201ENST00000371817 TNP2Q05952 138 aa9.57□□□□□ -0.88
COL5A1-201ENST00000371817 UNC79Q9P2D8 2635 aa9.57□□□□□ -0.88
COL5A1-201ENST00000371817 LINC00612Q8N6U2 182 aa9.57□□□□□ -0.88
COL5A1-201ENST00000371817 Q6ZSA8 131 aa9.52□□□□□ -0.88
COL5A1-201ENST00000371817 TEX15Q9BXT5 2789 aa9.52□□□□□ -0.89
COL5A1-201ENST00000371817 Q5W150 140 aa9.51□□□□□ -0.89
COL5A1-201ENST00000371817 ZCCHC13Q8WW36 166 aaKnown RBP9.51□□□□□ -0.89
COL5A1-201ENST00000371817 R4GN34 69 aa9.5□□□□□ -0.89
COL5A1-201ENST00000371817 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.49□□□□□ -0.89
COL5A1-201ENST00000371817 FLNBO75369 2602 aaKnown RBP9.48□□□□□ -0.89
COL5A1-201ENST00000371817 H1FX-AS1Q4G0G2 97 aa9.46□□□□□ -0.9
COL5A1-201ENST00000371817 SMR3BP02814 79 aaPredicted RBP9.45□□□□□ -0.9
COL5A1-201ENST00000371817 CASC10Q5T4H9 136 aa9.43□□□□□ -0.9
COL5A1-201ENST00000371817 FREM2Q5SZK8 3169 aa9.43□□□□□ -0.9
COL5A1-201ENST00000371817 LINC00472Q9H8W2 130 aa9.43□□□□□ -0.9
COL5A1-201ENST00000371817 MAP1AP78559 2803 aaPredicted RBP9.42□□□□□ -0.9
COL5A1-201ENST00000371817 APCP25054 2843 aa9.41□□□□□ -0.9
COL5A1-201ENST00000371817 NSD1Q96L73 2696 aaPredicted RBP9.4□□□□□ -0.9
COL5A1-201ENST00000371817 KRTAP25-1Q3LHN0 102 aa9.4□□□□□ -0.9
COL5A1-201ENST00000371817 A6NN06 94 aa9.4□□□□□ -0.91
COL5A1-201ENST00000371817 KRTAP10-11P60412 298 aa9.39□□□□□ -0.91
COL5A1-201ENST00000371817 DSPP15924 2871 aaKnown RBP9.39□□□□□ -0.91
COL5A1-201ENST00000371817 KRTAP24-1Q3LI83 254 aa9.39□□□□□ -0.91
COL5A1-201ENST00000371817 NDUFAF8A1L188 74 aa9.38□□□□□ -0.91
COL5A1-201ENST00000371817 BAHCC1Q9P281 2608 aa9.36□□□□□ -0.91
COL5A1-201ENST00000371817 SPATA8Q6RVD6 105 aa9.36□□□□□ -0.91
COL5A1-201ENST00000371817 UTP20O75691 2785 aaKnown RBP9.34□□□□□ -0.91
COL5A1-201ENST00000371817 K7EIL1 84 aa9.33□□□□□ -0.92
COL5A1-201ENST00000371817 ITPR1Q14643 2758 aa9.33□□□□□ -0.92
COL5A1-201ENST00000371817 Q6ZR54 194 aa9.32□□□□□ -0.92
COL5A1-201ENST00000371817 M0R2T5 61 aa9.32□□□□□ -0.92
COL5A1-201ENST00000371817 SPRR1AP35321 89 aa9.3□□□□□ -0.92
COL5A1-201ENST00000371817 PLAC4Q8WY50 150 aa9.3□□□□□ -0.92
COL5A1-201ENST00000371817 REV3LO60673 3130 aa9.3□□□□□ -0.92
COL5A1-201ENST00000371817 NBEAL2Q6ZNJ1 2754 aa9.27□□□□□ -0.93
COL5A1-201ENST00000371817 SEC61BP60468 96 aaKnown RBP9.26□□□□□ -0.93
COL5A1-201ENST00000371817 M0QZ58 72 aa9.25□□□□□ -0.93
COL5A1-201ENST00000371817 Q8NDZ9 215 aa9.24□□□□□ -0.93
COL5A1-201ENST00000371817 KMT2BQ9UMN6 2715 aaPredicted RBP9.23□□□□□ -0.93
COL5A1-201ENST00000371817 TEP1Q99973 2627 aaKnown RBP9.21□□□□□ -0.94
COL5A1-201ENST00000371817 KRTAP26-1Q6PEX3 210 aa9.21□□□□□ -0.94
COL5A1-201ENST00000371817 SPRR1BP22528 89 aa9.2□□□□□ -0.94
COL5A1-201ENST00000371817 C20orf166-AS1Q96NR2 134 aa9.18□□□□□ -0.94
COL5A1-201ENST00000371817 RANBP2P49792 3224 aaKnown RBP9.18□□□□□ -0.94
COL5A1-201ENST00000371817 LRBAP50851 2863 aa9.17□□□□□ -0.94
COL5A1-201ENST00000371817 UBR5O95071 2799 aaPredicted RBP9.17□□□□□ -0.94
COL5A1-201ENST00000371817 VPS13AQ96RL7 3174 aa9.16□□□□□ -0.94
COL5A1-201ENST00000371817 FRYQ5TBA9 3013 aa9.16□□□□□ -0.94
COL5A1-201ENST00000371817 TRANK1O15050 2925 aa9.15□□□□□ -0.94
COL5A1-201ENST00000371817 TRIOO75962 3097 aa9.15□□□□□ -0.94
COL5A1-201ENST00000371817 ADM2Q7Z4H4 148 aa9.15□□□□□ -0.95
COL5A1-201ENST00000371817 XIRP2A4UGR9 3374 aa9.13□□□□□ -0.95
COL5A1-201ENST00000371817 PLAC8Q9NZF1 115 aa9.12□□□□□ -0.95
COL5A1-201ENST00000371817 IGSF10Q6WRI0 2623 aa9.12□□□□□ -0.95
COL5A1-201ENST00000371817 KRTAP10-3P60369 221 aa9.11□□□□□ -0.95
COL5A1-201ENST00000371817 ITPR2Q14571 2701 aa9.1□□□□□ -0.95
COL5A1-201ENST00000371817 PANO1I0J062 215 aa9.1□□□□□ -0.95
COL5A1-201ENST00000371817 KALRNO60229 2985 aa9.08□□□□□ -0.96
COL5A1-201ENST00000371817 KRTAP29-1A8MX34 341 aaPredicted RBP9.08□□□□□ -0.96
COL5A1-201ENST00000371817 A0A087X002 238 aa9.07□□□□□ -0.96
COL5A1-201ENST00000371817 ZNF292O60281 2723 aa9.04□□□□□ -0.96
COL5A1-201ENST00000371817 MGAQ8IWI9 3026 aa9.04□□□□□ -0.96
COL5A1-201ENST00000371817 MKI67P46013 3256 aaKnown RBP9.02□□□□□ -0.97
COL5A1-201ENST00000371817 ASH1LQ9NR48 2969 aaKnown RBP9.01□□□□□ -0.97
COL5A1-201ENST00000371817 FRYLO94915 3013 aa9.01□□□□□ -0.97
COL5A1-201ENST00000371817 CELSR3Q9NYQ7 3312 aa9.01□□□□□ -0.97
COL5A1-201ENST00000371817 PRUNE2Q8WUY3 3088 aa9□□□□□ -0.97
COL5A1-201ENST00000371817 UNC80Q8N2C7 3258 aa9□□□□□ -0.97
COL5A1-201ENST00000371817 A8MU10 97 aa8.98□□□□□ -0.97
COL5A1-201ENST00000371817 A8MUU9 505 aa8.97□□□□□ -0.97
COL5A1-201ENST00000371817 SETXQ7Z333 2677 aaKnown RBP8.96□□□□□ -0.97
COL5A1-201ENST00000371817 LCE6AA0A183 80 aa8.95□□□□□ -0.98
COL5A1-201ENST00000371817 C10orf95Q9H7T3 257 aa8.89□□□□□ -0.99
COL5A1-201ENST00000371817 COL12A1Q99715 3063 aa8.89□□□□□ -0.99
COL5A1-201ENST00000371817 KRTAP4-16G5E9R7 235 aaPredicted RBP8.88□□□□□ -0.99
COL5A1-201ENST00000371817 KRTAP11-1Q8IUC1 163 aa8.88□□□□□ -0.99
COL5A1-201ENST00000371817 CHD7Q9P2D1 2997 aa8.86□□□□□ -0.99
COL5A1-201ENST00000371817 CHD9Q3L8U1 2897 aa8.85□□□□□ -0.99
COL5A1-201ENST00000371817 WDFY4Q6ZS81 3184 aa8.83□□□□□ -1
COL5A1-201ENST00000371817 DMXL2Q8TDJ6 3036 aa8.8□□□□□ -1
COL5A1-201ENST00000371817 NBEAQ8NFP9 2946 aa8.78□□□□□ -1
COL5A1-201ENST00000371817 NOTCH2NLQ7Z3S9 236 aa8.77□□□□□ -1.01
COL5A1-201ENST00000371817 LAMA3Q16787 3333 aa8.76□□□□□ -1.01
COL5A1-201ENST00000371817 DNAH14Q0VDD8 3507 aa8.74□□□□□ -1.01
COL5A1-201ENST00000371817 BRCA2P51587 3418 aa8.74□□□□□ -1.01
COL5A1-201ENST00000371817 TNP1P09430 55 aa8.73□□□□□ -1.01
COL5A1-201ENST00000371817 TACC2O95359 2948 aa8.72□□□□□ -1.01
COL5A1-201ENST00000371817 KRTAP1-3Q8IUG1 177 aa8.7□□□□□ -1.02
COL5A1-201ENST00000371817 PP632Q6XCG6 107 aa8.7□□□□□ -1.02
COL5A1-201ENST00000371817 KRTAP1-5Q9BYS1 174 aa8.67□□□□□ -1.02
COL5A1-201ENST00000371817 LAMA1P25391 3075 aa8.66□□□□□ -1.02
COL5A1-201ENST00000371817 KRTAP1-1Q07627 177 aa8.63□□□□□ -1.03
COL5A1-201ENST00000371817 CRYBG3Q68DQ2 2970 aa8.62□□□□□ -1.03
COL5A1-201ENST00000371817 Q5VSD8 79 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms