RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 CEP350Q5VT06 3117 aa13.32□□□□□ -0.28
TM9SF3-201ENST00000371142 Q5VV11 94 aa13.31□□□□□ -0.28
TM9SF3-201ENST00000371142 R4GN34 69 aa13.31□□□□□ -0.28
TM9SF3-201ENST00000371142 Q5VSD8 79 aa13.3□□□□□ -0.28
TM9SF3-201ENST00000371142 ATRQ13535 2644 aa13.3□□□□□ -0.28
TM9SF3-201ENST00000371142 KRTAP10-1P60331 282 aa13.26□□□□□ -0.29
TM9SF3-201ENST00000371142 KRTAP26-1Q6PEX3 210 aa13.26□□□□□ -0.29
TM9SF3-201ENST00000371142 KRTAP10-2P60368 255 aa13.24□□□□□ -0.29
TM9SF3-201ENST00000371142 SEC61BP60468 96 aaKnown RBP13.21□□□□□ -0.29
TM9SF3-201ENST00000371142 MAST4O15021 2626 aa13.2□□□□□ -0.3
TM9SF3-201ENST00000371142 HELZ2Q9BYK8 2649 aaKnown RBP13.16□□□□□ -0.3
TM9SF3-201ENST00000371142 CHD7Q9P2D1 2997 aa13.11□□□□□ -0.31
TM9SF3-201ENST00000371142 LCE6AA0A183 80 aa13.1□□□□□ -0.31
TM9SF3-201ENST00000371142 PANO1I0J062 215 aa13.09□□□□□ -0.31
TM9SF3-201ENST00000371142 M0QZ58 72 aa13.09□□□□□ -0.31
TM9SF3-201ENST00000371142 RPL37P61927 97 aaKnown RBP13.09□□□□□ -0.31
TM9SF3-201ENST00000371142 CFAP46Q8IYW2 2715 aa13.07□□□□□ -0.32
TM9SF3-201ENST00000371142 H1FX-AS1Q4G0G2 97 aa13.05□□□□□ -0.32
TM9SF3-201ENST00000371142 ROMO1P60602 79 aa13.04□□□□□ -0.32
TM9SF3-201ENST00000371142 OXTP01178 125 aa13.01□□□□□ -0.33
TM9SF3-201ENST00000371142 Q6ZR54 194 aa13.01□□□□□ -0.33
TM9SF3-201ENST00000371142 SPATA8Q6RVD6 105 aa12.97□□□□□ -0.33
TM9SF3-201ENST00000371142 ADM2Q7Z4H4 148 aa12.97□□□□□ -0.33
TM9SF3-201ENST00000371142 KRTAP4-16G5E9R7 235 aaPredicted RBP12.97□□□□□ -0.33
TM9SF3-201ENST00000371142 A0A0A0MQY5 61 aa12.96□□□□□ -0.33
TM9SF3-201ENST00000371142 H3BS24 57 aa12.96□□□□□ -0.33
TM9SF3-201ENST00000371142 PCNTO95613 3336 aa12.96□□□□□ -0.33
TM9SF3-201ENST00000371142 A0A087X002 238 aa12.94□□□□□ -0.34
TM9SF3-201ENST00000371142 CFAP54Q96N23 3096 aa12.9□□□□□ -0.35
TM9SF3-201ENST00000371142 AKAP13Q12802 2813 aa12.89□□□□□ -0.35
TM9SF3-201ENST00000371142 CHD6Q8TD26 2715 aa12.88□□□□□ -0.35
TM9SF3-201ENST00000371142 KRTAP29-1A8MX34 341 aaPredicted RBP12.87□□□□□ -0.35
TM9SF3-201ENST00000371142 STAB1Q9NY15 2570 aa12.86□□□□□ -0.35
TM9SF3-201ENST00000371142 CENPEQ02224 2701 aa12.84□□□□□ -0.35
TM9SF3-201ENST00000371142 NOTCH2NLQ7Z3S9 236 aa12.84□□□□□ -0.35
TM9SF3-201ENST00000371142 PLAC4Q8WY50 150 aa12.84□□□□□ -0.35
TM9SF3-201ENST00000371142 TEX15Q9BXT5 2789 aa12.8□□□□□ -0.36
TM9SF3-201ENST00000371142 NBEAL1Q6ZS30 2694 aa12.79□□□□□ -0.36
TM9SF3-201ENST00000371142 FLG2Q5D862 2391 aaPredicted RBP12.78□□□□□ -0.36
TM9SF3-201ENST00000371142 CHD9Q3L8U1 2897 aa12.77□□□□□ -0.37
TM9SF3-201ENST00000371142 MGAQ8IWI9 3026 aa12.76□□□□□ -0.37
TM9SF3-201ENST00000371142 KRTAP11-1Q8IUC1 163 aa12.76□□□□□ -0.37
TM9SF3-201ENST00000371142 MKI67P46013 3256 aaKnown RBP12.66□□□□□ -0.38
TM9SF3-201ENST00000371142 A0A0C4DFX4 3053 aa12.66□□□□□ -0.38
TM9SF3-201ENST00000371142 TEP1Q99973 2627 aaKnown RBP12.65□□□□□ -0.38
TM9SF3-201ENST00000371142 GCN1Q92616 2671 aaKnown RBP12.63□□□□□ -0.39
TM9SF3-201ENST00000371142 HTTP42858 3142 aa12.63□□□□□ -0.39
TM9SF3-201ENST00000371142 RANBP2P49792 3224 aaKnown RBP12.6□□□□□ -0.39
TM9SF3-201ENST00000371142 A8MU10 97 aa12.58□□□□□ -0.4
TM9SF3-201ENST00000371142 Q6ZRN7 208 aaPredicted RBP12.57□□□□□ -0.4
TM9SF3-201ENST00000371142 KRTAP7-1Q8IUC3 87 aa12.56□□□□□ -0.4
TM9SF3-201ENST00000371142 UNC79Q9P2D8 2635 aa12.56□□□□□ -0.4
TM9SF3-201ENST00000371142 DMBT1Q9UGM3 2413 aaPredicted RBP12.56□□□□□ -0.4
TM9SF3-201ENST00000371142 ASB16-AS1Q495Z4 193 aa12.56□□□□□ -0.4
TM9SF3-201ENST00000371142 LAMA3Q16787 3333 aa12.53□□□□□ -0.4
TM9SF3-201ENST00000371142 A8MUU9 505 aa12.52□□□□□ -0.41
TM9SF3-201ENST00000371142 RPS29P62273 56 aaKnown RBP12.5□□□□□ -0.41
TM9SF3-201ENST00000371142 KRTAP13-2Q52LG2 175 aa12.49□□□□□ -0.41
TM9SF3-201ENST00000371142 COL6A5A8TX70 2615 aa12.48□□□□□ -0.41
TM9SF3-201ENST00000371142 WDFY4Q6ZS81 3184 aa12.47□□□□□ -0.41
TM9SF3-201ENST00000371142 NBEAL2Q6ZNJ1 2754 aa12.45□□□□□ -0.42
TM9SF3-201ENST00000371142 LAMA2P24043 3122 aaKnown RBP12.45□□□□□ -0.42
TM9SF3-201ENST00000371142 TRIOO75962 3097 aa12.44□□□□□ -0.42
TM9SF3-201ENST00000371142 SETXQ7Z333 2677 aaKnown RBP12.44□□□□□ -0.42
TM9SF3-201ENST00000371142 NOTCH1P46531 2555 aa12.42□□□□□ -0.42
TM9SF3-201ENST00000371142 KRTAP25-1Q3LHN0 102 aa12.4□□□□□ -0.42
TM9SF3-201ENST00000371142 TRANK1O15050 2925 aa12.4□□□□□ -0.42
TM9SF3-201ENST00000371142 BRCA2P51587 3418 aa12.38□□□□□ -0.43
TM9SF3-201ENST00000371142 ZNF292O60281 2723 aa12.37□□□□□ -0.43
TM9SF3-201ENST00000371142 KRTAP13-1Q8IUC0 172 aa12.36□□□□□ -0.43
TM9SF3-201ENST00000371142 A6NN06 94 aa12.35□□□□□ -0.43
TM9SF3-201ENST00000371142 C20orf166-AS1Q96NR2 134 aa12.35□□□□□ -0.43
TM9SF3-201ENST00000371142 PRUNE2Q8WUY3 3088 aa12.28□□□□□ -0.44
TM9SF3-201ENST00000371142 XIRP2A4UGR9 3374 aa12.28□□□□□ -0.44
TM9SF3-201ENST00000371142 STAB2Q8WWQ8 2551 aa12.26□□□□□ -0.45
TM9SF3-201ENST00000371142 DSPP15924 2871 aaKnown RBP12.24□□□□□ -0.45
TM9SF3-201ENST00000371142 FRYQ5TBA9 3013 aa12.23□□□□□ -0.45
TM9SF3-201ENST00000371142 KRTAP16-1A8MUX0 517 aa12.21□□□□□ -0.46
TM9SF3-201ENST00000371142 IGSF10Q6WRI0 2623 aa12.18□□□□□ -0.46
TM9SF3-201ENST00000371142 MAP1AP78559 2803 aaPredicted RBP12.18□□□□□ -0.46
TM9SF3-201ENST00000371142 UNC80Q8N2C7 3258 aa12.17□□□□□ -0.46
TM9SF3-201ENST00000371142 UBR5O95071 2799 aaPredicted RBP12.17□□□□□ -0.46
TM9SF3-201ENST00000371142 FREM2Q5SZK8 3169 aa12.16□□□□□ -0.46
TM9SF3-201ENST00000371142 BAHCC1Q9P281 2608 aa12.14□□□□□ -0.47
TM9SF3-201ENST00000371142 CELSR3Q9NYQ7 3312 aa12.13□□□□□ -0.47
TM9SF3-201ENST00000371142 ITPR2Q14571 2701 aa12.1□□□□□ -0.47
TM9SF3-201ENST00000371142 VPS13AQ96RL7 3174 aa12.1□□□□□ -0.47
TM9SF3-201ENST00000371142 NDUFAF8A1L188 74 aa12.08□□□□□ -0.48
TM9SF3-201ENST00000371142 TNP1P09430 55 aa12.08□□□□□ -0.48
TM9SF3-201ENST00000371142 CDH23Q9H251 3354 aa12.01□□□□□ -0.49
TM9SF3-201ENST00000371142 NSD1Q96L73 2696 aaPredicted RBP12.01□□□□□ -0.49
TM9SF3-201ENST00000371142 C10orf95Q9H7T3 257 aa12□□□□□ -0.49
TM9SF3-201ENST00000371142 KALRNO60229 2985 aa11.99□□□□□ -0.49
TM9SF3-201ENST00000371142 ITPR1Q14643 2758 aa11.92□□□□□ -0.5
TM9SF3-201ENST00000371142 A0A1B0GVY2 172 aa11.87□□□□□ -0.51
TM9SF3-201ENST00000371142 APCP25054 2843 aa11.84□□□□□ -0.51
TM9SF3-201ENST00000371142 TACC2O95359 2948 aa11.83□□□□□ -0.52
TM9SF3-201ENST00000371142 XP32Q5T750 250 aa11.83□□□□□ -0.52
TM9SF3-201ENST00000371142 KRTAP10-8P60410 259 aa11.81□□□□□ -0.52
TM9SF3-201ENST00000371142 UTP20O75691 2785 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms