RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 HECTD1Q9ULT8 2610 aa9.78□□□□□ -0.84
COL17A1-202ENST00000369733 TNP2Q05952 138 aa9.77□□□□□ -0.84
COL17A1-202ENST00000369733 ATRQ13535 2644 aa9.74□□□□□ -0.85
COL17A1-202ENST00000369733 A0A1B0GU33 70 aa9.74□□□□□ -0.85
COL17A1-202ENST00000369733 MGAM2Q2M2H8 2515 aa9.73□□□□□ -0.85
COL17A1-202ENST00000369733 SMR3BP02814 79 aaPredicted RBP9.72□□□□□ -0.85
COL17A1-202ENST00000369733 CENPEQ02224 2701 aa9.7□□□□□ -0.86
COL17A1-202ENST00000369733 Q5W150 140 aa9.7□□□□□ -0.86
COL17A1-202ENST00000369733 WDFY4Q6ZS81 3184 aa9.7□□□□□ -0.86
COL17A1-202ENST00000369733 ZCCHC13Q8WW36 166 aaKnown RBP9.68□□□□□ -0.86
COL17A1-202ENST00000369733 KRTAP4-16G5E9R7 235 aaPredicted RBP9.66□□□□□ -0.86
COL17A1-202ENST00000369733 CHD6Q8TD26 2715 aa9.66□□□□□ -0.86
COL17A1-202ENST00000369733 CSAG1Q6PB30 78 aa9.66□□□□□ -0.86
COL17A1-202ENST00000369733 XIRP2A4UGR9 3374 aa9.66□□□□□ -0.86
COL17A1-202ENST00000369733 VPS13AQ96RL7 3174 aa9.65□□□□□ -0.86
COL17A1-202ENST00000369733 FRYQ5TBA9 3013 aa9.65□□□□□ -0.86
COL17A1-202ENST00000369733 PRUNE2Q8WUY3 3088 aa9.64□□□□□ -0.87
COL17A1-202ENST00000369733 KRTAP29-1A8MX34 341 aaPredicted RBP9.64□□□□□ -0.87
COL17A1-202ENST00000369733 PLAC8Q9NZF1 115 aa9.64□□□□□ -0.87
COL17A1-202ENST00000369733 AKAP13Q12802 2813 aa9.63□□□□□ -0.87
COL17A1-202ENST00000369733 CDH23Q9H251 3354 aa9.62□□□□□ -0.87
COL17A1-202ENST00000369733 GCN1Q92616 2671 aaKnown RBP9.61□□□□□ -0.87
COL17A1-202ENST00000369733 DNAH14Q0VDD8 3507 aa9.6□□□□□ -0.87
COL17A1-202ENST00000369733 KRTAP1-5Q9BYS1 174 aa9.6□□□□□ -0.87
COL17A1-202ENST00000369733 Q6ZR54 194 aa9.58□□□□□ -0.88
COL17A1-202ENST00000369733 DSPP15924 2871 aaKnown RBP9.58□□□□□ -0.88
COL17A1-202ENST00000369733 FLNBO75369 2602 aaKnown RBP9.58□□□□□ -0.88
COL17A1-202ENST00000369733 CELSR3Q9NYQ7 3312 aa9.57□□□□□ -0.88
COL17A1-202ENST00000369733 DMAC1Q96GE9 116 aa9.55□□□□□ -0.88
COL17A1-202ENST00000369733 ZNF292O60281 2723 aa9.55□□□□□ -0.88
COL17A1-202ENST00000369733 FREM2Q5SZK8 3169 aa9.54□□□□□ -0.88
COL17A1-202ENST00000369733 CFAP46Q8IYW2 2715 aa9.54□□□□□ -0.88
COL17A1-202ENST00000369733 NBEAQ8NFP9 2946 aa9.53□□□□□ -0.88
COL17A1-202ENST00000369733 MAST4O15021 2626 aa9.51□□□□□ -0.89
COL17A1-202ENST00000369733 UNC79Q9P2D8 2635 aa9.51□□□□□ -0.89
COL17A1-202ENST00000369733 LCE6AA0A183 80 aa9.51□□□□□ -0.89
COL17A1-202ENST00000369733 LINC00483Q53H64 154 aa9.5□□□□□ -0.89
COL17A1-202ENST00000369733 VCANP13611 3396 aa9.49□□□□□ -0.89
COL17A1-202ENST00000369733 LAMA1P25391 3075 aa9.48□□□□□ -0.89
COL17A1-202ENST00000369733 COX6B2Q6YFQ2 88 aa9.48□□□□□ -0.89
COL17A1-202ENST00000369733 NBEAL2Q6ZNJ1 2754 aa9.47□□□□□ -0.89
COL17A1-202ENST00000369733 MAP1AP78559 2803 aaPredicted RBP9.46□□□□□ -0.89
COL17A1-202ENST00000369733 KALRNO60229 2985 aa9.45□□□□□ -0.9
COL17A1-202ENST00000369733 HELZ2Q9BYK8 2649 aaKnown RBP9.43□□□□□ -0.9
COL17A1-202ENST00000369733 A6NN06 94 aa9.43□□□□□ -0.9
COL17A1-202ENST00000369733 ASB16-AS1Q495Z4 193 aa9.43□□□□□ -0.9
COL17A1-202ENST00000369733 LUZP6Q538Z0 58 aa9.42□□□□□ -0.9
COL17A1-202ENST00000369733 PANO1I0J062 215 aa9.4□□□□□ -0.9
COL17A1-202ENST00000369733 A0A0A0MQY5 61 aa9.4□□□□□ -0.9
COL17A1-202ENST00000369733 J3QL48 77 aa9.38□□□□□ -0.91
COL17A1-202ENST00000369733 A0A087X002 238 aa9.38□□□□□ -0.91
COL17A1-202ENST00000369733 NOTCH2NLQ7Z3S9 236 aa9.38□□□□□ -0.91
COL17A1-202ENST00000369733 KRTAP16-1A8MUX0 517 aa9.37□□□□□ -0.91
COL17A1-202ENST00000369733 SZT2Q5T011 3432 aa9.36□□□□□ -0.91
COL17A1-202ENST00000369733 SPATA8Q6RVD6 105 aa9.36□□□□□ -0.91
COL17A1-202ENST00000369733 S4R3F8 94 aa9.36□□□□□ -0.91
COL17A1-202ENST00000369733 KRTAP7-1Q8IUC3 87 aa9.35□□□□□ -0.91
COL17A1-202ENST00000369733 H1FX-AS1Q4G0G2 97 aa9.35□□□□□ -0.91
COL17A1-202ENST00000369733 A8MU10 97 aa9.34□□□□□ -0.91
COL17A1-202ENST00000369733 NBEAL1Q6ZS30 2694 aa9.34□□□□□ -0.91
COL17A1-202ENST00000369733 Q6ZSA8 131 aa9.33□□□□□ -0.92
COL17A1-202ENST00000369733 ROMO1P60602 79 aa9.32□□□□□ -0.92
COL17A1-202ENST00000369733 KRTAP11-1Q8IUC1 163 aa9.32□□□□□ -0.92
COL17A1-202ENST00000369733 TEX15Q9BXT5 2789 aa9.32□□□□□ -0.92
COL17A1-202ENST00000369733 RPL37P61927 97 aaKnown RBP9.31□□□□□ -0.92
COL17A1-202ENST00000369733 SETXQ7Z333 2677 aaKnown RBP9.26□□□□□ -0.93
COL17A1-202ENST00000369733 CAMK2N1Q7Z7J9 78 aa9.26□□□□□ -0.93
COL17A1-202ENST00000369733 FRYLO94915 3013 aa9.25□□□□□ -0.93
COL17A1-202ENST00000369733 ADGRG4Q8IZF6 3080 aa9.25□□□□□ -0.93
COL17A1-202ENST00000369733 LRBAP50851 2863 aa9.24□□□□□ -0.93
COL17A1-202ENST00000369733 NOTCH1P46531 2555 aa9.22□□□□□ -0.93
COL17A1-202ENST00000369733 KRTAP10-1P60331 282 aa9.21□□□□□ -0.93
COL17A1-202ENST00000369733 KRTAP10-2P60368 255 aa9.21□□□□□ -0.93
COL17A1-202ENST00000369733 COL6A3P12111 3177 aa9.21□□□□□ -0.94
COL17A1-202ENST00000369733 ADM2Q7Z4H4 148 aa9.2□□□□□ -0.94
COL17A1-202ENST00000369733 BOD1L1Q8NFC6 3051 aa9.2□□□□□ -0.94
COL17A1-202ENST00000369733 IGSF10Q6WRI0 2623 aa9.16□□□□□ -0.94
COL17A1-202ENST00000369733 TEP1Q99973 2627 aaKnown RBP9.15□□□□□ -0.94
COL17A1-202ENST00000369733 ATMQ13315 3056 aa9.15□□□□□ -0.94
COL17A1-202ENST00000369733 ITPR1Q14643 2758 aa9.13□□□□□ -0.95
COL17A1-202ENST00000369733 KRTAP25-1Q3LHN0 102 aa9.13□□□□□ -0.95
COL17A1-202ENST00000369733 KRTAP13-1Q8IUC0 172 aa9.13□□□□□ -0.95
COL17A1-202ENST00000369733 UBR5O95071 2799 aaPredicted RBP9.12□□□□□ -0.95
COL17A1-202ENST00000369733 R4GN34 69 aa9.11□□□□□ -0.95
COL17A1-202ENST00000369733 COL6A5A8TX70 2615 aa9.11□□□□□ -0.95
COL17A1-202ENST00000369733 TACC2O95359 2948 aa9.1□□□□□ -0.95
COL17A1-202ENST00000369733 BAHCC1Q9P281 2608 aa9.09□□□□□ -0.95
COL17A1-202ENST00000369733 SPEGQ15772 3267 aa9.07□□□□□ -0.96
COL17A1-202ENST00000369733 STAB1Q9NY15 2570 aa9.07□□□□□ -0.96
COL17A1-202ENST00000369733 Q6ZRN7 208 aaPredicted RBP9.07□□□□□ -0.96
COL17A1-202ENST00000369733 ZZEF1O43149 2961 aa9.07□□□□□ -0.96
COL17A1-202ENST00000369733 ASH1LQ9NR48 2969 aaKnown RBP9.05□□□□□ -0.96
COL17A1-202ENST00000369733 DMXL2Q8TDJ6 3036 aa9.04□□□□□ -0.96
COL17A1-202ENST00000369733 DMBT1Q9UGM3 2413 aaPredicted RBP9.01□□□□□ -0.97
COL17A1-202ENST00000369733 SPTBN5Q9NRC6 3674 aaKnown RBP9□□□□□ -0.97
COL17A1-202ENST00000369733 REV3LO60673 3130 aa9□□□□□ -0.97
COL17A1-202ENST00000369733 M0QZ58 72 aa9□□□□□ -0.97
COL17A1-202ENST00000369733 COL12A1Q99715 3063 aa9□□□□□ -0.97
COL17A1-202ENST00000369733 APCP25054 2843 aa8.97□□□□□ -0.97
COL17A1-202ENST00000369733 KRTAP13-2Q52LG2 175 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms