RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 R4GN34 69 aa3.76□□□□□ -1.81
CDC42BPA-201ENST00000334218 Q6ZPA2 131 aa3.76□□□□□ -1.81
CDC42BPA-201ENST00000334218 CYSTM1Q9H1C7 97 aa3.76□□□□□ -1.81
CDC42BPA-201ENST00000334218 HELZ2Q9BYK8 2649 aaKnown RBP3.75□□□□□ -1.81
CDC42BPA-201ENST00000334218 LINC00304Q8N9R0 145 aa3.75□□□□□ -1.81
CDC42BPA-201ENST00000334218 MGAM2Q2M2H8 2515 aa3.75□□□□□ -1.81
CDC42BPA-201ENST00000334218 PANO1I0J062 215 aa3.75□□□□□ -1.81
CDC42BPA-201ENST00000334218 FLNBO75369 2602 aaKnown RBP3.74□□□□□ -1.81
CDC42BPA-201ENST00000334218 Q5W150 140 aa3.74□□□□□ -1.81
CDC42BPA-201ENST00000334218 KRTAP21-3Q3LHN1 58 aa3.74□□□□□ -1.81
CDC42BPA-201ENST00000334218 Q8NDZ9 215 aa3.74□□□□□ -1.81
CDC42BPA-201ENST00000334218 INE1O15225 51 aa3.73□□□□□ -1.81
CDC42BPA-201ENST00000334218 Q8N1X5 172 aa3.73□□□□□ -1.81
CDC42BPA-201ENST00000334218 LCE6AA0A183 80 aa3.73□□□□□ -1.81
CDC42BPA-201ENST00000334218 AKAP13Q12802 2813 aa3.73□□□□□ -1.81
CDC42BPA-201ENST00000334218 Q6ZSN1 163 aa3.72□□□□□ -1.81
CDC42BPA-201ENST00000334218 C10orf99Q6UWK7 81 aa3.72□□□□□ -1.81
CDC42BPA-201ENST00000334218 KRTAP11-1Q8IUC1 163 aa3.72□□□□□ -1.81
CDC42BPA-201ENST00000334218 TEP1Q99973 2627 aaKnown RBP3.71□□□□□ -1.82
CDC42BPA-201ENST00000334218 STAB2Q8WWQ8 2551 aa3.71□□□□□ -1.82
CDC42BPA-201ENST00000334218 ATRQ13535 2644 aa3.71□□□□□ -1.82
CDC42BPA-201ENST00000334218 CFAP46Q8IYW2 2715 aa3.7□□□□□ -1.82
CDC42BPA-201ENST00000334218 MMP24-AS1A0A0U1RRL7 71 aa3.7□□□□□ -1.82
CDC42BPA-201ENST00000334218 CEP350Q5VT06 3117 aa3.7□□□□□ -1.82
CDC42BPA-201ENST00000334218 KMT2BQ9UMN6 2715 aaPredicted RBP3.7□□□□□ -1.82
CDC42BPA-201ENST00000334218 MAST4O15021 2626 aa3.69□□□□□ -1.82
CDC42BPA-201ENST00000334218 A0A096LNT2 108 aa3.68□□□□□ -1.82
CDC42BPA-201ENST00000334218 COL6A5A8TX70 2615 aa3.68□□□□□ -1.82
CDC42BPA-201ENST00000334218 MAP1AP78559 2803 aaPredicted RBP3.67□□□□□ -1.82
CDC42BPA-201ENST00000334218 NSD1Q96L73 2696 aaPredicted RBP3.67□□□□□ -1.82
CDC42BPA-201ENST00000334218 M0R2N4 97 aa3.67□□□□□ -1.82
CDC42BPA-201ENST00000334218 PCNTO95613 3336 aa3.67□□□□□ -1.82
CDC42BPA-201ENST00000334218 KLK9Q2XQG4 91 aa3.66□□□□□ -1.82
CDC42BPA-201ENST00000334218 KRTAP1-3Q8IUG1 177 aa3.66□□□□□ -1.82
CDC42BPA-201ENST00000334218 LINC00472Q9H8W2 130 aa3.65□□□□□ -1.82
CDC42BPA-201ENST00000334218 TNP1P09430 55 aa3.64□□□□□ -1.83
CDC42BPA-201ENST00000334218 P0C880 135 aa3.64□□□□□ -1.83
CDC42BPA-201ENST00000334218 FLNAP21333 2647 aaKnown RBP3.64□□□□□ -1.83
CDC42BPA-201ENST00000334218 NBDYA0A0U1RRE5 68 aa3.62□□□□□ -1.83
CDC42BPA-201ENST00000334218 KRTAP1-1Q07627 177 aa3.61□□□□□ -1.83
CDC42BPA-201ENST00000334218 CENPFP49454 3210 aa3.61□□□□□ -1.83
CDC42BPA-201ENST00000334218 SETXQ7Z333 2677 aaKnown RBP3.61□□□□□ -1.83
CDC42BPA-201ENST00000334218 K7EIL1 84 aa3.61□□□□□ -1.83
CDC42BPA-201ENST00000334218 KRTAP26-1Q6PEX3 210 aa3.61□□□□□ -1.83
CDC42BPA-201ENST00000334218 C10orf95Q9H7T3 257 aa3.61□□□□□ -1.83
CDC42BPA-201ENST00000334218 SPRR1BP22528 89 aa3.6□□□□□ -1.83
CDC42BPA-201ENST00000334218 DNAH12Q6ZR08 3092 aa3.6□□□□□ -1.83
CDC42BPA-201ENST00000334218 KRTAP4-16G5E9R7 235 aaPredicted RBP3.59□□□□□ -1.83
CDC42BPA-201ENST00000334218 TEX15Q9BXT5 2789 aa3.59□□□□□ -1.83
CDC42BPA-201ENST00000334218 Q6ZSA8 131 aa3.58□□□□□ -1.84
CDC42BPA-201ENST00000334218 IGSF10Q6WRI0 2623 aa3.58□□□□□ -1.84
CDC42BPA-201ENST00000334218 TRANK1O15050 2925 aa3.57□□□□□ -1.84
CDC42BPA-201ENST00000334218 UBR5O95071 2799 aaPredicted RBP3.56□□□□□ -1.84
CDC42BPA-201ENST00000334218 DSPP15924 2871 aaKnown RBP3.56□□□□□ -1.84
CDC42BPA-201ENST00000334218 UTP20O75691 2785 aaKnown RBP3.56□□□□□ -1.84
CDC42BPA-201ENST00000334218 KRTAP29-1A8MX34 341 aaPredicted RBP3.55□□□□□ -1.84
CDC42BPA-201ENST00000334218 SPRR1AP35321 89 aa3.55□□□□□ -1.84
CDC42BPA-201ENST00000334218 HTTP42858 3142 aa3.54□□□□□ -1.84
CDC42BPA-201ENST00000334218 C9orf92A6NGG3 77 aa3.54□□□□□ -1.84
CDC42BPA-201ENST00000334218 PRO2289Q9P1D8 64 aa3.54□□□□□ -1.84
CDC42BPA-201ENST00000334218 GIG44P09565 113 aaPredicted RBP3.52□□□□□ -1.85
CDC42BPA-201ENST00000334218 NIPBLQ6KC79 2804 aaeCLIP3.52□□□□□ -1.852e-6■■■■□ 19.4
CDC42BPA-201ENST00000334218 KRTAP10-3P60369 221 aa3.51□□□□□ -1.85
CDC42BPA-201ENST00000334218 MKI67P46013 3256 aaKnown RBP3.51□□□□□ -1.85
CDC42BPA-201ENST00000334218 KRTAP10-11P60412 298 aa3.51□□□□□ -1.85
CDC42BPA-201ENST00000334218 C5orf42Q9H799 3197 aa3.51□□□□□ -1.85
CDC42BPA-201ENST00000334218 CHD7Q9P2D1 2997 aa3.51□□□□□ -1.85
CDC42BPA-201ENST00000334218 LINC00612Q8N6U2 182 aa3.5□□□□□ -1.85
CDC42BPA-201ENST00000334218 ITPR1Q14643 2758 aa3.47□□□□□ -1.85
CDC42BPA-201ENST00000334218 RPS29P62273 56 aaKnown RBP3.47□□□□□ -1.85
CDC42BPA-201ENST00000334218 PLAC8Q9NZF1 115 aa3.46□□□□□ -1.86
CDC42BPA-201ENST00000334218 ITPR2Q14571 2701 aa3.45□□□□□ -1.86
CDC42BPA-201ENST00000334218 A0A087WTM6 91 aa3.45□□□□□ -1.86
CDC42BPA-201ENST00000334218 RANBP2P49792 3224 aaKnown RBP3.44□□□□□ -1.86
CDC42BPA-201ENST00000334218 BRCA2P51587 3418 aa3.44□□□□□ -1.86
CDC42BPA-201ENST00000334218 XIRP2A4UGR9 3374 aa3.44□□□□□ -1.86
CDC42BPA-201ENST00000334218 LAMA3Q16787 3333 aa3.43□□□□□ -1.86
CDC42BPA-201ENST00000334218 CHD9Q3L8U1 2897 aa3.42□□□□□ -1.86
CDC42BPA-201ENST00000334218 APCP25054 2843 aa3.42□□□□□ -1.86
CDC42BPA-201ENST00000334218 SRRM2Q9UQ35 2752 aaKnown RBP3.41□□□□□ -1.86
CDC42BPA-201ENST00000334218 Q5VSD8 79 aa3.41□□□□□ -1.86
CDC42BPA-201ENST00000334218 KRTAP19-4Q3LI73 84 aa3.41□□□□□ -1.86
CDC42BPA-201ENST00000334218 TENM3Q9P273 2699 aa3.41□□□□□ -1.86
CDC42BPA-201ENST00000334218 HIVEP1P15822 2718 aa3.37□□□□□ -1.87
CDC42BPA-201ENST00000334218 SPTBN5Q9NRC6 3674 aaKnown RBP3.37□□□□□ -1.87
CDC42BPA-201ENST00000334218 DNAH14Q0VDD8 3507 aa3.37□□□□□ -1.87
CDC42BPA-201ENST00000334218 A8MU10 97 aa3.36□□□□□ -1.87
CDC42BPA-201ENST00000334218 M0R2T5 61 aa3.36□□□□□ -1.87
CDC42BPA-201ENST00000334218 ZANQ9Y493 2812 aa3.35□□□□□ -1.87
CDC42BPA-201ENST00000334218 LAMA2P24043 3122 aaKnown RBP3.35□□□□□ -1.87
CDC42BPA-201ENST00000334218 PRUNE2Q8WUY3 3088 aa3.35□□□□□ -1.87
CDC42BPA-201ENST00000334218 NF1P21359 2839 aa3.35□□□□□ -1.87
CDC42BPA-201ENST00000334218 H0YAA0 97 aa3.33□□□□□ -1.88
CDC42BPA-201ENST00000334218 A0A0C4DFX4 3053 aa3.33□□□□□ -1.88
CDC42BPA-201ENST00000334218 MYO15AQ9UKN7 3530 aa3.32□□□□□ -1.88
CDC42BPA-201ENST00000334218 CDH23Q9H251 3354 aa3.31□□□□□ -1.88
CDC42BPA-201ENST00000334218 MT3P25713 68 aa3.3□□□□□ -1.88
CDC42BPA-201ENST00000334218 WDFY3Q8IZQ1 3526 aa3.3□□□□□ -1.88
CDC42BPA-201ENST00000334218 TNRC18O15417 2968 aaPredicted RBP3.29□□□□□ -1.88
CDC42BPA-201ENST00000334218 SMR3BP02814 79 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms