RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 M0QZ58 72 aa12.46□□□□□ -0.41
RNF40-201ENST00000324685 KRTAP10-1P60331 282 aa12.43□□□□□ -0.42
RNF40-201ENST00000324685 GOLGB1Q14789 3259 aaKnown RBP12.42□□□□□ -0.42
RNF40-201ENST00000324685 KRTAP29-1A8MX34 341 aaPredicted RBP12.39□□□□□ -0.43
RNF40-201ENST00000324685 KRTAP4-16G5E9R7 235 aaPredicted RBP12.39□□□□□ -0.43
RNF40-201ENST00000324685 KRTAP10-2P60368 255 aa12.35□□□□□ -0.43
RNF40-201ENST00000324685 ADM2Q7Z4H4 148 aa12.33□□□□□ -0.44
RNF40-201ENST00000324685 MGAM2Q2M2H8 2515 aa12.33□□□□□ -0.44
RNF40-201ENST00000324685 LCE6AA0A183 80 aa12.33□□□□□ -0.44
RNF40-201ENST00000324685 USP24Q9UPU5 2620 aa12.3□□□□□ -0.44
RNF40-201ENST00000324685 SPATA8Q6RVD6 105 aa12.29□□□□□ -0.44
RNF40-201ENST00000324685 PLAC4Q8WY50 150 aa12.28□□□□□ -0.44
RNF40-201ENST00000324685 EPG5Q9HCE0 2579 aa12.28□□□□□ -0.44
RNF40-201ENST00000324685 HECTD1Q9ULT8 2610 aa12.26□□□□□ -0.45
RNF40-201ENST00000324685 PANO1I0J062 215 aa12.23□□□□□ -0.45
RNF40-201ENST00000324685 FLNAP21333 2647 aaKnown RBP12.16□□□□□ -0.46
RNF40-201ENST00000324685 A0A087X002 238 aa12.15□□□□□ -0.46
RNF40-201ENST00000324685 RPS29P62273 56 aaKnown RBP12.13□□□□□ -0.47
RNF40-201ENST00000324685 NOTCH2NLQ7Z3S9 236 aa12.09□□□□□ -0.47
RNF40-201ENST00000324685 BPTFQ12830 3046 aa12.07□□□□□ -0.48
RNF40-201ENST00000324685 KRTAP25-1Q3LHN0 102 aa12.05□□□□□ -0.48
RNF40-201ENST00000324685 ITPR3Q14573 2671 aa12.04□□□□□ -0.48
RNF40-201ENST00000324685 A6NN06 94 aa12.03□□□□□ -0.48
RNF40-201ENST00000324685 FLNBO75369 2602 aaKnown RBP12.03□□□□□ -0.48
RNF40-201ENST00000324685 ATRQ13535 2644 aa11.99□□□□□ -0.49
RNF40-201ENST00000324685 KRTAP16-1A8MUX0 517 aa11.98□□□□□ -0.49
RNF40-201ENST00000324685 KRTAP11-1Q8IUC1 163 aa11.93□□□□□ -0.5
RNF40-201ENST00000324685 A8MUU9 505 aa11.92□□□□□ -0.5
RNF40-201ENST00000324685 A8MU10 97 aa11.92□□□□□ -0.5
RNF40-201ENST00000324685 DNAH12Q6ZR08 3092 aa11.92□□□□□ -0.5
RNF40-201ENST00000324685 Q6ZRN7 208 aaPredicted RBP11.88□□□□□ -0.51
RNF40-201ENST00000324685 MAST4O15021 2626 aa11.86□□□□□ -0.51
RNF40-201ENST00000324685 PRRC2CQ9Y520 2896 aaKnown RBP11.86□□□□□ -0.51
RNF40-201ENST00000324685 KRTAP7-1Q8IUC3 87 aa11.84□□□□□ -0.51
RNF40-201ENST00000324685 C20orf166-AS1Q96NR2 134 aa11.83□□□□□ -0.51
RNF40-201ENST00000324685 HELZ2Q9BYK8 2649 aaKnown RBP11.8□□□□□ -0.52
RNF40-201ENST00000324685 KRTAP13-1Q8IUC0 172 aa11.8□□□□□ -0.52
RNF40-201ENST00000324685 KRTAP13-2Q52LG2 175 aa11.79□□□□□ -0.52
RNF40-201ENST00000324685 UTRNP46939 3433 aa11.76□□□□□ -0.53
RNF40-201ENST00000324685 FLG2Q5D862 2391 aaPredicted RBP11.7□□□□□ -0.54
RNF40-201ENST00000324685 STAB1Q9NY15 2570 aa11.66□□□□□ -0.54
RNF40-201ENST00000324685 NDUFAF8A1L188 74 aa11.64□□□□□ -0.55
RNF40-201ENST00000324685 TNP1P09430 55 aa11.63□□□□□ -0.55
RNF40-201ENST00000324685 DMBT1Q9UGM3 2413 aaPredicted RBP11.63□□□□□ -0.55
RNF40-201ENST00000324685 CEP350Q5VT06 3117 aa11.62□□□□□ -0.55
RNF40-201ENST00000324685 NBEAL1Q6ZS30 2694 aa11.62□□□□□ -0.55
RNF40-201ENST00000324685 CFAP46Q8IYW2 2715 aa11.6□□□□□ -0.55
RNF40-201ENST00000324685 C5orf42Q9H799 3197 aa11.49□□□□□ -0.57
RNF40-201ENST00000324685 C10orf95Q9H7T3 257 aa11.46□□□□□ -0.57
RNF40-201ENST00000324685 CHD6Q8TD26 2715 aa11.46□□□□□ -0.57
RNF40-201ENST00000324685 CHD7Q9P2D1 2997 aa11.43□□□□□ -0.58
RNF40-201ENST00000324685 AKAP13Q12802 2813 aa11.4□□□□□ -0.58
RNF40-201ENST00000324685 PP632Q6XCG6 107 aa11.4□□□□□ -0.58
RNF40-201ENST00000324685 UNC79Q9P2D8 2635 aa11.39□□□□□ -0.59
RNF40-201ENST00000324685 GCN1Q92616 2671 aaKnown RBP11.37□□□□□ -0.59
RNF40-201ENST00000324685 TEX15Q9BXT5 2789 aa11.37□□□□□ -0.59
RNF40-201ENST00000324685 CENPEQ02224 2701 aa11.34□□□□□ -0.59
RNF40-201ENST00000324685 PCNTO95613 3336 aa11.31□□□□□ -0.6
RNF40-201ENST00000324685 TEP1Q99973 2627 aaKnown RBP11.26□□□□□ -0.61
RNF40-201ENST00000324685 CHD9Q3L8U1 2897 aa11.2□□□□□ -0.62
RNF40-201ENST00000324685 XP32Q5T750 250 aa11.19□□□□□ -0.62
RNF40-201ENST00000324685 COL6A5A8TX70 2615 aa11.17□□□□□ -0.62
RNF40-201ENST00000324685 KRTAP21-3Q3LHN1 58 aa11.16□□□□□ -0.62
RNF40-201ENST00000324685 NOTCH1P46531 2555 aa11.15□□□□□ -0.62
RNF40-201ENST00000324685 KRTAP1-4P0C5Y4 121 aa11.15□□□□□ -0.62
RNF40-201ENST00000324685 KRTAP10-8P60410 259 aa11.14□□□□□ -0.63
RNF40-201ENST00000324685 STAB2Q8WWQ8 2551 aa11.14□□□□□ -0.63
RNF40-201ENST00000324685 HTTP42858 3142 aa11.13□□□□□ -0.63
RNF40-201ENST00000324685 H0YAA0 97 aa11.12□□□□□ -0.63
RNF40-201ENST00000324685 RANBP2P49792 3224 aaKnown RBP11.08□□□□□ -0.64
RNF40-201ENST00000324685 NBEAL2Q6ZNJ1 2754 aa11.08□□□□□ -0.64
RNF40-201ENST00000324685 P0C880 135 aa11.07□□□□□ -0.64
RNF40-201ENST00000324685 SETXQ7Z333 2677 aaKnown RBP11.06□□□□□ -0.64
RNF40-201ENST00000324685 MGAQ8IWI9 3026 aa11.03□□□□□ -0.64
RNF40-201ENST00000324685 CFAP54Q96N23 3096 aa11.01□□□□□ -0.65
RNF40-201ENST00000324685 ZNF292O60281 2723 aa10.99□□□□□ -0.65
RNF40-201ENST00000324685 A0A1B0GVY2 172 aa10.99□□□□□ -0.65
RNF40-201ENST00000324685 TPRXLQ17RH7 258 aa10.98□□□□□ -0.65
RNF40-201ENST00000324685 NSD1Q96L73 2696 aaPredicted RBP10.97□□□□□ -0.65
RNF40-201ENST00000324685 MKI67P46013 3256 aaKnown RBP10.97□□□□□ -0.65
RNF40-201ENST00000324685 LAMA3Q16787 3333 aa10.96□□□□□ -0.65
RNF40-201ENST00000324685 TRANK1O15050 2925 aa10.91□□□□□ -0.66
RNF40-201ENST00000324685 A0A0C4DFX4 3053 aa10.89□□□□□ -0.67
RNF40-201ENST00000324685 KMT2BQ9UMN6 2715 aaPredicted RBP10.88□□□□□ -0.67
RNF40-201ENST00000324685 PRO2289Q9P1D8 64 aa10.85□□□□□ -0.67
RNF40-201ENST00000324685 ITPR2Q14571 2701 aa10.85□□□□□ -0.67
RNF40-201ENST00000324685 BRCA2P51587 3418 aa10.84□□□□□ -0.67
RNF40-201ENST00000324685 IGSF10Q6WRI0 2623 aa10.84□□□□□ -0.67
RNF40-201ENST00000324685 MAP1AP78559 2803 aaPredicted RBP10.83□□□□□ -0.68
RNF40-201ENST00000324685 KRTAP10-10P60014 251 aa10.81□□□□□ -0.68
RNF40-201ENST00000324685 UBR5O95071 2799 aaPredicted RBP10.81□□□□□ -0.68
RNF40-201ENST00000324685 WDFY4Q6ZS81 3184 aa10.78□□□□□ -0.68
RNF40-201ENST00000324685 LAMA2P24043 3122 aaKnown RBP10.77□□□□□ -0.69
RNF40-201ENST00000324685 KRTAP13-3Q3SY46 172 aa10.76□□□□□ -0.69
RNF40-201ENST00000324685 BAHCC1Q9P281 2608 aa10.74□□□□□ -0.69
RNF40-201ENST00000324685 PRUNE2Q8WUY3 3088 aa10.7□□□□□ -0.7
RNF40-201ENST00000324685 TRIOO75962 3097 aa10.66□□□□□ -0.7
RNF40-201ENST00000324685 DSPP15924 2871 aaKnown RBP10.64□□□□□ -0.71
RNF40-201ENST00000324685 UNC80Q8N2C7 3258 aa10.63□□□□□ -0.71
RNF40-201ENST00000324685 XIRP2A4UGR9 3374 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms