RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 SSBP3-AS1Q7Z2R9 100 aa14.29□□□□□ -0.12
HOXC9-201ENST00000303450 LINC00304Q8N9R0 145 aa14.29□□□□□ -0.12
HOXC9-201ENST00000303450 DNAL4O96015 105 aa14.28□□□□□ -0.12
HOXC9-201ENST00000303450 Q8NBF4 154 aa14.28□□□□□ -0.12
HOXC9-201ENST00000303450 SNHG12Q9BXW3 62 aa14.28□□□□□ -0.12
HOXC9-201ENST00000303450 PPDPFLQ8WWR9 84 aa14.27□□□□□ -0.12
HOXC9-201ENST00000303450 HERC1Q15751 4861 aa14.26□□□□□ -0.13
HOXC9-201ENST00000303450 GHRHP01286 108 aa14.25□□□□□ -0.13
HOXC9-201ENST00000303450 LST1O00453 97 aa14.23□□□□□ -0.13
HOXC9-201ENST00000303450 C4orf48Q5BLP8 95 aa14.23□□□□□ -0.13
HOXC9-201ENST00000303450 F8WEM9 126 aa14.22□□□□□ -0.13
HOXC9-201ENST00000303450 H3BUT2 72 aa14.22□□□□□ -0.13
HOXC9-201ENST00000303450 TAX1BP3O14907 124 aa14.21□□□□□ -0.13
HOXC9-201ENST00000303450 C9orf118A6NHY6 69 aa14.2□□□□□ -0.14
HOXC9-201ENST00000303450 TRACP01848 142 aa14.2□□□□□ -0.14
HOXC9-201ENST00000303450 LYRM7Q5U5X0 104 aa14.2□□□□□ -0.14
HOXC9-201ENST00000303450 SPAG11AQ6PDA7 123 aa14.2□□□□□ -0.14
HOXC9-201ENST00000303450 ORMDL1Q9P0S3 153 aa14.2□□□□□ -0.14
HOXC9-201ENST00000303450 FABP2P12104 132 aa14.18□□□□□ -0.14
HOXC9-201ENST00000303450 COL5A1-AS1Q5SY13 56 aa14.17□□□□□ -0.14
HOXC9-201ENST00000303450 TCL1BO95988 128 aa14.16□□□□□ -0.14
HOXC9-201ENST00000303450 ATXN8Q156A1 80 aa14.16□□□□□ -0.14
HOXC9-201ENST00000303450 H3BQ85 93 aa14.15□□□□□ -0.14
HOXC9-201ENST00000303450 SPINK1P00995 79 aa14.13□□□□□ -0.15
HOXC9-201ENST00000303450 NDUFV3P56181 108 aaKnown RBP14.12□□□□□ -0.15
HOXC9-201ENST00000303450 TRBV20-1A0A075B6N2 111 aa14.11□□□□□ -0.15
HOXC9-201ENST00000303450 A0A1W2PPM0 123 aa14.11□□□□□ -0.15
HOXC9-201ENST00000303450 TMEM256-PLSCR3K7ERE1 68 aa14.11□□□□□ -0.15
HOXC9-201ENST00000303450 IGLV8-61A0A075B6I0 122 aa14.1□□□□□ -0.15
HOXC9-201ENST00000303450 Q6JHZ5 121 aa14.08□□□□□ -0.16
HOXC9-201ENST00000303450 HRCT1Q6UXD1 115 aa14.08□□□□□ -0.16
HOXC9-201ENST00000303450 A0A0G2JQZ4 141 aa14.07□□□□□ -0.16
HOXC9-201ENST00000303450 H3BMG7 143 aa14.05□□□□□ -0.16
HOXC9-201ENST00000303450 BAALC-AS2P0C853 105 aa14.05□□□□□ -0.16
HOXC9-201ENST00000303450 RPS29P62273 56 aaKnown RBP14.04□□□□□ -0.16
HOXC9-201ENST00000303450 CD164Q04900 197 aa14.04□□□□□ -0.16
HOXC9-201ENST00000303450 UBE2V1Q13404 147 aa14.03□□□□□ -0.16
HOXC9-201ENST00000303450 IGFL1Q6UW32 110 aa14.03□□□□□ -0.16
HOXC9-201ENST00000303450 A0A1B0GV72 72 aa13.98□□□□□ -0.17
HOXC9-201ENST00000303450 ANKRD29Q8N6D5 301 aa13.98□□□□□ -0.17
HOXC9-201ENST00000303450 RETNLBQ9BQ08 111 aa13.98□□□□□ -0.17
HOXC9-201ENST00000303450 SPCS1Q9Y6A9 102 aa13.98□□□□□ -0.17
HOXC9-201ENST00000303450 C9JAW5 83 aa13.97□□□□□ -0.17
HOXC9-201ENST00000303450 LIMD2Q9BT23 127 aa13.97□□□□□ -0.17
HOXC9-201ENST00000303450 PRR4Q16378 134 aa13.95□□□□□ -0.18
HOXC9-201ENST00000303450 HMCN2Q8NDA2 5059 aa13.92□□□□□ -0.18
HOXC9-201ENST00000303450 RBM3P98179 157 aaKnown RBP13.9□□□□□ -0.19
HOXC9-201ENST00000303450 TRBV7-7A0A0K0K1E9 115 aa13.89□□□□□ -0.19
HOXC9-201ENST00000303450 TEN1Q86WV5 123 aa13.88□□□□□ -0.19
HOXC9-201ENST00000303450 Q5XG85 94 aa13.87□□□□□ -0.19
HOXC9-201ENST00000303450 Q6Q795 121 aa13.86□□□□□ -0.19
HOXC9-201ENST00000303450 MTURNQ8N3F0 131 aa13.86□□□□□ -0.19
HOXC9-201ENST00000303450 H3BT86 120 aa13.85□□□□□ -0.19
HOXC9-201ENST00000303450 K7EP34 96 aa13.85□□□□□ -0.19
HOXC9-201ENST00000303450 DSCR8Q96T75 97 aa13.85□□□□□ -0.19
HOXC9-201ENST00000303450 JMJD7-PLA2G4BH0Y9G9 81 aa13.84□□□□□ -0.19
HOXC9-201ENST00000303450 FP248Q71RG6 208 aaPredicted RBP13.83□□□□□ -0.2
HOXC9-201ENST00000303450 TRBV7-4A0A0J9YYF1 115 aa13.82□□□□□ -0.2
HOXC9-201ENST00000303450 IGLV7-46A0A075B6I9 117 aa13.81□□□□□ -0.2
HOXC9-201ENST00000303450 A0A1W2PNM2 257 aa13.81□□□□□ -0.2
HOXC9-201ENST00000303450 GTF2H5Q6ZYL4 71 aa13.8□□□□□ -0.2
HOXC9-201ENST00000303450 CCKP06307 115 aa13.8□□□□□ -0.2
HOXC9-201ENST00000303450 A0A087WSZ3 146 aa13.76□□□□□ -0.21
HOXC9-201ENST00000303450 VPS25Q9BRG1 176 aa13.75□□□□□ -0.21
HOXC9-201ENST00000303450 SS18L2Q9UHA2 77 aa13.75□□□□□ -0.21
HOXC9-201ENST00000303450 C1orf195Q5TG92 126 aa13.74□□□□□ -0.21
HOXC9-201ENST00000303450 ASB16-AS1Q495Z4 193 aa13.74□□□□□ -0.21
HOXC9-201ENST00000303450 OBSCN-AS1Q96MR7 158 aa13.74□□□□□ -0.21
HOXC9-201ENST00000303450 C14orf132Q9NPU4 83 aa13.72□□□□□ -0.21
HOXC9-201ENST00000303450 LOC110117498A0A087WWA1 95 aa13.7□□□□□ -0.22
HOXC9-201ENST00000303450 PDE6GP18545 87 aa13.7□□□□□ -0.22
HOXC9-201ENST00000303450 SMCPP49901 116 aaPredicted RBP13.7□□□□□ -0.22
HOXC9-201ENST00000303450 PRO0461Q9UI25 63 aa13.7□□□□□ -0.22
HOXC9-201ENST00000303450 Q6ZQT0 140 aa13.69□□□□□ -0.22
HOXC9-201ENST00000303450 TPRXLQ17RH7 258 aa13.67□□□□□ -0.22
HOXC9-201ENST00000303450 LPAP08519 4548 aa13.67□□□□□ -0.22
HOXC9-201ENST00000303450 LRP2P98164 4655 aa13.65□□□□□ -0.22
HOXC9-201ENST00000303450 F8W1H4 67 aa13.62□□□□□ -0.23
HOXC9-201ENST00000303450 C21orf62-AS1Q17RA5 79 aa13.61□□□□□ -0.23
HOXC9-201ENST00000303450 KRTAP13-3Q3SY46 172 aa13.61□□□□□ -0.23
HOXC9-201ENST00000303450 CDIP1Q9H305 208 aa13.6□□□□□ -0.23
HOXC9-201ENST00000303450 A0A1B0GW54 56 aa13.58□□□□□ -0.24
HOXC9-201ENST00000303450 Q96NJ1 140 aa13.55□□□□□ -0.24
HOXC9-201ENST00000303450 A0A1B0GV90 55 aa13.53□□□□□ -0.24
HOXC9-201ENST00000303450 C9orf92A6NGG3 77 aa13.5□□□□□ -0.25
HOXC9-201ENST00000303450 LINC00472Q9H8W2 130 aa13.5□□□□□ -0.25
HOXC9-201ENST00000303450 ETDBQ3ZM63 59 aa13.49□□□□□ -0.25
HOXC9-201ENST00000303450 IGKV4-1P06312 121 aa13.48□□□□□ -0.25
HOXC9-201ENST00000303450 DEFB116Q30KQ4 102 aa13.48□□□□□ -0.25
HOXC9-201ENST00000303450 SIGMAR1Q99720 223 aa13.48□□□□□ -0.25
HOXC9-201ENST00000303450 UBR4Q5T4S7 5183 aa13.45□□□□□ -0.26
HOXC9-201ENST00000303450 NREPQ16612 68 aa13.41□□□□□ -0.26
HOXC9-201ENST00000303450 XP32Q5T750 250 aa13.41□□□□□ -0.26
HOXC9-201ENST00000303450 J3KT08 172 aa13.38□□□□□ -0.27
HOXC9-201ENST00000303450 IGHV6-1A0A0B4J1U7 121 aa13.29□□□□□ -0.28
HOXC9-201ENST00000303450 DSCR10P59022 87 aa13.29□□□□□ -0.28
HOXC9-201ENST00000303450 NDUFB1O75438 58 aa13.28□□□□□ -0.28
HOXC9-201ENST00000303450 A0A1B0GVX0 72 aa13.27□□□□□ -0.29
HOXC9-201ENST00000303450 LINC00313P59037 77 aa13.27□□□□□ -0.29
HOXC9-201ENST00000303450 Q6ZVQ6 151 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms